HEADER APOPTOSIS REGULATOR/INHIBITOR 01-JUL-11 3SPF TITLE CRYSTAL STRUCTURE OF BCL-XL BOUND TO BM501 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEE REMARK 999; COMPND 5 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X,BCL2-L-1,APOPTOSIS COMPND 6 REGULATOR BCL-X; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-TEV KEYWDS BCL-2-LIKE PROTEIN, APOPTOSIS-APOPTOSIS INHIBITOR COMPLEX, APOPTOSIS KEYWDS 2 REGULATOR-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.MEAGHER,J.A.STUCKEY REVDAT 4 28-FEB-24 3SPF 1 REMARK REVDAT 3 08-NOV-17 3SPF 1 REMARK REVDAT 2 28-JUN-17 3SPF 1 DBREF SEQADV SEQRES REVDAT 1 27-JUN-12 3SPF 0 JRNL AUTH H.ZHOU,J.CHEN,J.L.MEAGHER,C.Y.YANG,A.AGUILAR,L.LIU,L.BAI, JRNL AUTH 2 X.CONG,Q.CAI,X.FANG,J.A.STUCKEY,S.WANG JRNL TITL DESIGN OF BCL-2 AND BCL-XL INHIBITORS WITH SUBNANOMOLAR JRNL TITL 2 BINDING AFFINITIES BASED UPON A NEW SCAFFOLD. JRNL REF J.MED.CHEM. V. 55 4664 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22448988 JRNL DOI 10.1021/JM300178U REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2834 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1892 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2698 REMARK 3 BIN R VALUE (WORKING SET) : 0.1884 REMARK 3 BIN FREE R VALUE : 0.2056 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54440 REMARK 3 B22 (A**2) : -1.54440 REMARK 3 B33 (A**2) : 3.08880 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.217 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.096 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.090 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.091 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.087 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1303 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1764 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 563 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 33 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 190 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1303 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 146 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1609 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.88 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.62 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - 25} REMARK 3 ORIGIN FOR THE GROUP (A): 36.5490 19.0955 -5.2778 REMARK 3 T TENSOR REMARK 3 T11: -0.0033 T22: 0.0112 REMARK 3 T33: -0.0296 T12: 0.0477 REMARK 3 T13: -0.0347 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.1924 L22: 0.8624 REMARK 3 L33: 0.7904 L12: -0.3433 REMARK 3 L13: 0.7402 L23: 0.0851 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: -0.3075 S13: -0.0833 REMARK 3 S21: 0.2197 S22: 0.1735 S23: -0.2880 REMARK 3 S31: -0.1288 S32: -0.0341 S33: -0.0988 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|82 - 110} REMARK 3 ORIGIN FOR THE GROUP (A): 31.9204 21.8600 -17.1633 REMARK 3 T TENSOR REMARK 3 T11: -0.0142 T22: -0.0291 REMARK 3 T33: -0.0640 T12: 0.0350 REMARK 3 T13: 0.0161 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 5.5686 L22: 3.4890 REMARK 3 L33: 3.7203 L12: 0.3292 REMARK 3 L13: 2.0165 L23: 1.2688 REMARK 3 S TENSOR REMARK 3 S11: 0.1417 S12: -0.3162 S13: -0.1137 REMARK 3 S21: -0.1261 S22: -0.0006 S23: -0.2181 REMARK 3 S31: -0.0937 S32: -0.0993 S33: -0.1411 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|111 - 133} REMARK 3 ORIGIN FOR THE GROUP (A): 29.9115 3.8382 -14.9412 REMARK 3 T TENSOR REMARK 3 T11: -0.0197 T22: -0.0390 REMARK 3 T33: 0.0631 T12: -0.0098 REMARK 3 T13: -0.0113 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.7700 L22: 3.5719 REMARK 3 L33: 3.7333 L12: 1.4258 REMARK 3 L13: -1.1167 L23: -1.9509 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: -0.0467 S13: -0.4137 REMARK 3 S21: -0.2205 S22: 0.3295 S23: 0.2577 REMARK 3 S31: 0.3828 S32: -0.1841 S33: -0.2395 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|134 - 181} REMARK 3 ORIGIN FOR THE GROUP (A): 35.0750 11.3897 -11.5421 REMARK 3 T TENSOR REMARK 3 T11: -0.0487 T22: -0.0686 REMARK 3 T33: -0.0440 T12: 0.0268 REMARK 3 T13: -0.0032 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.4519 L22: 2.2544 REMARK 3 L33: 1.5861 L12: -0.9194 REMARK 3 L13: -0.9466 L23: -0.0334 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: -0.1154 S13: -0.2796 REMARK 3 S21: 0.1500 S22: 0.1590 S23: 0.0013 REMARK 3 S31: 0.0918 S32: -0.0691 S33: 0.0148 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|182 - 197} REMARK 3 ORIGIN FOR THE GROUP (A): 47.0888 21.1740 -20.6902 REMARK 3 T TENSOR REMARK 3 T11: -0.0331 T22: -0.0191 REMARK 3 T33: 0.0720 T12: -0.0028 REMARK 3 T13: 0.0997 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.3194 L22: 2.4791 REMARK 3 L33: 1.7236 L12: 2.3207 REMARK 3 L13: -0.3306 L23: -0.8284 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.0439 S13: 0.3373 REMARK 3 S21: 0.0115 S22: 0.0642 S23: 0.1820 REMARK 3 S31: -0.2737 S32: 0.0310 S33: -0.1234 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM CITRATE, 25 MM CHES, PH REMARK 280 9.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.87400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.87400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.66000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.87400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.87400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.66000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.87400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.87400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.66000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.87400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.87400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.66000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 GLN A 66 REMARK 465 PHE A 67 REMARK 465 SER A 68 REMARK 465 ASP A 69 REMARK 465 VAL A 70 REMARK 465 GLU A 71 REMARK 465 GLU A 72 REMARK 465 ASN A 73 REMARK 465 ARG A 74 REMARK 465 THR A 75 REMARK 465 GLU A 76 REMARK 465 ALA A 77 REMARK 465 PRO A 78 REMARK 465 GLU A 79 REMARK 465 GLY A 80 REMARK 465 THR A 81 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 SER A 25 OG REMARK 470 SER A 110 OG REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 ASN A 197 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 96 CD OE1 OE2 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 B50 A 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B50 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SP7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL BOUND TO BM903 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FRAGMENT COMPRISES UNP Q07817 ISOFORM BCL-X(L) RESIDUES 1-44 AND 85- REMARK 999 209 WITH RESIDUES 45-84 DELETED. DBREF 3SPF A 1 84 UNP Q07817 B2CL1_HUMAN 1 44 DBREF 3SPF A 85 209 UNP Q07817 B2CL1_HUMAN 85 209 SEQADV 3SPF SER A -2 UNP Q07817 EXPRESSION TAG SEQADV 3SPF GLU A -1 UNP Q07817 EXPRESSION TAG SEQADV 3SPF PHE A 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 172 SER GLU PHE MET SER GLN SER ASN ARG GLU LEU VAL VAL SEQRES 2 A 172 ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER SEQRES 3 A 172 TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR GLU SEQRES 4 A 172 ALA PRO GLU GLY THR GLU SER GLU ALA VAL LYS GLN ALA SEQRES 5 A 172 LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG SEQRES 6 A 172 ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR SEQRES 7 A 172 PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN SEQRES 8 A 172 GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL SEQRES 9 A 172 ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER SEQRES 10 A 172 VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA SEQRES 11 A 172 ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO SEQRES 12 A 172 TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU SEQRES 13 A 172 LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY SEQRES 14 A 172 GLN GLU ARG HET B50 A 501 74 HET GOL A 209 6 HET GOL A 210 6 HET GOL A 211 6 HET GOL A 212 6 HETNAM B50 4-(4-CHLOROPHENYL)-1-[(3S)-3,4-DIHYDROXYBUTYL]-N-[3-(4- HETNAM 2 B50 METHYLPIPERAZIN-1-YL)PROPYL]-3-PHENYL-1H-PYRROLE-2- HETNAM 3 B50 CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 B50 C29 H37 CL N4 O3 FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *110(H2 O) HELIX 1 1 MET A 1 LYS A 20 1 20 HELIX 2 2 GLU A 82 TYR A 101 1 20 HELIX 3 3 TYR A 101 LEU A 112 1 12 HELIX 4 4 THR A 118 PHE A 131 1 14 HELIX 5 5 ASN A 136 LYS A 157 1 22 HELIX 6 6 VAL A 161 LEU A 178 1 18 HELIX 7 7 LEU A 178 ASN A 185 1 8 HELIX 8 8 GLY A 186 GLY A 196 1 11 CISPEP 1 TRP A 24 SER A 25 0 -0.08 SITE 1 AC1 11 HOH A 48 PHE A 97 TYR A 101 ALA A 104 SITE 2 AC1 11 PHE A 105 LEU A 108 GLU A 129 LEU A 130 SITE 3 AC1 11 PHE A 146 GLN A 160 GOL A 212 SITE 1 AC2 4 TRP A 24 SER A 25 VAL A 155 GLN A 160 SITE 1 AC3 3 ASN A 136 ARG A 139 GOL A 212 SITE 1 AC4 4 ALA A 93 PHE A 97 ARG A 100 TYR A 195 SITE 1 AC5 5 GLU A 129 LEU A 130 ARG A 139 GOL A 210 SITE 2 AC5 5 B50 A 501 CRYST1 103.748 103.748 35.320 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028313 0.00000