HEADER TRANSFERASE 03-JUL-11 3SPT TITLE CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH ACETYL COENZYME A AND URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN GLMU; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE, N- COMPND 5 ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLUCOSAMINE-1- COMPND 6 PHOSPHATE N-ACETYLTRANSFERASE; COMPND 7 EC: 2.7.7.23, 2.3.1.157; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: GLMU, MT1046, RV1018C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQEII KEYWDS ACETYLTRANSFERASE, BIFUNCTIONAL, PYROPHOSPHORYLASE, ROSSMANN-LIKE KEYWDS 2 FOLD, LEFT-HANDED-BETA-HELIX, CELL SHAPE, CELL WALL KEYWDS 3 BIOGENESIS/DEGRADATION, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 4 NUCLEOTIDYLTRANSFERASE, PEPTIDOGLYCAN SYNTHESIS, TRANSFERASE, KEYWDS 5 ACYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.JAGTAP,B.PRAKASH REVDAT 2 01-NOV-23 3SPT 1 REMARK SEQADV LINK REVDAT 1 08-AUG-12 3SPT 0 JRNL AUTH P.A.JAGTAP,S.K.VERMA,B.PRAKASH JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS GLMU IN COMPLEX WITH JRNL TITL 2 ACETYL COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3471 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3619 ; 0.026 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4957 ; 2.353 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 7.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;32.400 ;23.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;17.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;22.170 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.246 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2701 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2342 ; 1.189 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3773 ; 2.173 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 3.798 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1184 ; 6.090 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3SPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARCCD 225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 19.808 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3DJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-CL, PH-8.5, 2% TACSIMATE, REMARK 280 18% PEG 3350, SITTING DROP, TEMPERATURE 291K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.81027 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 120.43167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.09700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.81027 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 120.43167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.09700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.81027 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 120.43167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.09700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.81027 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 120.43167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.09700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.81027 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.43167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.09700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.81027 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 120.43167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.62054 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 240.86333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 63.62054 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 240.86333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 63.62054 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 240.86333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 63.62054 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 240.86333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 63.62054 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 240.86333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 63.62054 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 240.86333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PHE A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 MET A 480 REMARK 465 ALA A 481 REMARK 465 CYS A 482 REMARK 465 GLN A 483 REMARK 465 GLN A 484 REMARK 465 PRO A 485 REMARK 465 THR A 486 REMARK 465 GLN A 487 REMARK 465 PRO A 488 REMARK 465 PRO A 489 REMARK 465 ASP A 490 REMARK 465 ALA A 491 REMARK 465 ASP A 492 REMARK 465 GLN A 493 REMARK 465 THR A 494 REMARK 465 PRO A 495 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 62 O HOH A 623 2.14 REMARK 500 O HOH A 572 O HOH A 662 2.14 REMARK 500 O HOH A 512 O HOH A 674 2.17 REMARK 500 OE2 GLU A 160 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 534 O HOH A 534 3555 1.35 REMARK 500 OD2 ASP A 417 O HOH A 534 3555 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 246 CG GLU A 246 CD 0.115 REMARK 500 THR A 376 CB THR A 376 CG2 -0.251 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 47 CB - CG - CD1 ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 30.28 -143.22 REMARK 500 LYS A 26 -70.83 -40.18 REMARK 500 VAL A 27 -36.01 -33.23 REMARK 500 THR A 115 65.11 -119.55 REMARK 500 ASP A 220 -6.39 -58.09 REMARK 500 VAL A 304 72.60 -105.28 REMARK 500 PHE A 340 64.27 65.14 REMARK 500 ASP A 352 14.00 57.07 REMARK 500 THR A 401 -51.19 77.81 REMARK 500 PRO A 444 140.00 -38.36 REMARK 500 SER A 450 -24.11 -145.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 466 GLY A 467 -36.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 497 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD2 REMARK 620 2 ASN A 239 OD1 90.6 REMARK 620 3 UD1 A 498 O2A 100.4 98.7 REMARK 620 4 UD1 A 498 O1B 171.5 91.2 71.1 REMARK 620 5 HOH A 711 O 117.0 83.4 142.5 71.4 REMARK 620 6 HOH A 712 O 101.2 161.9 92.6 79.2 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 499 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 417 OD1 REMARK 620 2 HOH A 501 O 99.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 497 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 498 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SPM RELATED DB: PDB REMARK 900 RELATED ID: 3SPN RELATED DB: PDB REMARK 900 RELATED ID: 3SPO RELATED DB: PDB REMARK 900 RELATED ID: 3SPP RELATED DB: PDB REMARK 900 RELATED ID: 3SPQ RELATED DB: PDB DBREF 3SPT A 1 495 UNP P96382 GLMU_MYCTU 1 495 SEQADV 3SPT HIS A -5 UNP P96382 EXPRESSION TAG SEQADV 3SPT HIS A -4 UNP P96382 EXPRESSION TAG SEQADV 3SPT HIS A -3 UNP P96382 EXPRESSION TAG SEQADV 3SPT HIS A -2 UNP P96382 EXPRESSION TAG SEQADV 3SPT HIS A -1 UNP P96382 EXPRESSION TAG SEQADV 3SPT HIS A 0 UNP P96382 EXPRESSION TAG SEQRES 1 A 501 HIS HIS HIS HIS HIS HIS MET THR PHE PRO GLY ASP THR SEQRES 2 A 501 ALA VAL LEU VAL LEU ALA ALA GLY PRO GLY THR ARG MET SEQRES 3 A 501 ARG SER ASP THR PRO LYS VAL LEU HIS THR LEU ALA GLY SEQRES 4 A 501 ARG SER MET LEU SER HIS VAL LEU HIS ALA ILE ALA LYS SEQRES 5 A 501 LEU ALA PRO GLN ARG LEU ILE VAL VAL LEU GLY HIS ASP SEQRES 6 A 501 HIS GLN ARG ILE ALA PRO LEU VAL GLY GLU LEU ALA ASP SEQRES 7 A 501 THR LEU GLY ARG THR ILE ASP VAL ALA LEU GLN ASP ARG SEQRES 8 A 501 PRO LEU GLY THR GLY HIS ALA VAL LEU CYS GLY LEU SER SEQRES 9 A 501 ALA LEU PRO ASP ASP TYR ALA GLY ASN VAL VAL VAL THR SEQRES 10 A 501 SER GLY ASP THR PRO LEU LEU ASP ALA ASP THR LEU ALA SEQRES 11 A 501 ASP LEU ILE ALA THR HIS ARG ALA VAL SER ALA ALA VAL SEQRES 12 A 501 THR VAL LEU THR THR THR LEU ASP ASP PRO PHE GLY TYR SEQRES 13 A 501 GLY ARG ILE LEU ARG THR GLN ASP HIS GLU VAL MET ALA SEQRES 14 A 501 ILE VAL GLU GLN THR ASP ALA THR PRO SER GLN ARG GLU SEQRES 15 A 501 ILE ARG GLU VAL ASN ALA GLY VAL TYR ALA PHE ASP ILE SEQRES 16 A 501 ALA ALA LEU ARG SER ALA LEU SER ARG LEU SER SER ASN SEQRES 17 A 501 ASN ALA GLN GLN GLU LEU TYR LEU THR ASP VAL ILE ALA SEQRES 18 A 501 ILE LEU ARG SER ASP GLY GLN THR VAL HIS ALA SER HIS SEQRES 19 A 501 VAL ASP ASP SER ALA LEU VAL ALA GLY VAL ASN ASN ARG SEQRES 20 A 501 VAL GLN LEU ALA GLU LEU ALA SER GLU LEU ASN ARG ARG SEQRES 21 A 501 VAL VAL ALA ALA HIS GLN LEU ALA GLY VAL THR VAL VAL SEQRES 22 A 501 ASP PRO ALA THR THR TRP ILE ASP VAL ASP VAL THR ILE SEQRES 23 A 501 GLY ARG ASP THR VAL ILE HIS PRO GLY THR GLN LEU LEU SEQRES 24 A 501 GLY ARG THR GLN ILE GLY GLY ARG CYS VAL VAL GLY PRO SEQRES 25 A 501 ASP THR THR LEU THR ASP VAL ALA VAL GLY ASP GLY ALA SEQRES 26 A 501 SER VAL VAL ARG THR HIS GLY SER SER SER SER ILE GLY SEQRES 27 A 501 ASP GLY ALA ALA VAL GLY PRO PHE THR TYR LEU ARG PRO SEQRES 28 A 501 GLY THR ALA LEU GLY ALA ASP GLY LYS LEU GLY ALA PHE SEQRES 29 A 501 VAL GLU VAL LYS ASN SER THR ILE GLY THR GLY THR LYS SEQRES 30 A 501 VAL PRO HIS LEU THR TYR VAL GLY ASP ALA ASP ILE GLY SEQRES 31 A 501 GLU TYR SER ASN ILE GLY ALA SER SER VAL PHE VAL ASN SEQRES 32 A 501 TYR ASP GLY THR SER LYS ARG ARG THR THR VAL GLY SER SEQRES 33 A 501 HIS VAL ARG THR GLY SER ASP THR MET PHE VAL ALA PRO SEQRES 34 A 501 VAL THR ILE GLY ASP GLY ALA TYR THR GLY ALA GLY THR SEQRES 35 A 501 VAL VAL ARG GLU ASP VAL PRO PRO GLY ALA LEU ALA VAL SEQRES 36 A 501 SER ALA GLY PRO GLN ARG ASN ILE GLU ASN TRP VAL GLN SEQRES 37 A 501 ARG LYS ARG PRO GLY SER PRO ALA ALA GLN ALA SER LYS SEQRES 38 A 501 ARG ALA SER GLU MET ALA CYS GLN GLN PRO THR GLN PRO SEQRES 39 A 501 PRO ASP ALA ASP GLN THR PRO HET MG A 497 1 HET MG A 499 1 HET ACO A 496 51 HET MG A 500 1 HET UD1 A 498 39 HETNAM MG MAGNESIUM ION HETNAM ACO ACETYL COENZYME *A HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 2 MG 3(MG 2+) FORMUL 4 ACO C23 H38 N7 O17 P3 S FORMUL 6 UD1 C17 H27 N3 O17 P2 FORMUL 7 HOH *212(H2 O) HELIX 1 1 GLY A 17 ARG A 21 5 5 HELIX 2 2 PRO A 25 LEU A 28 5 4 HELIX 3 3 MET A 36 ALA A 48 1 13 HELIX 4 4 ASP A 59 GLY A 75 1 17 HELIX 5 5 GLY A 88 SER A 98 1 11 HELIX 6 6 ASP A 119 VAL A 133 1 15 HELIX 7 7 THR A 171 GLU A 176 1 6 HELIX 8 8 ILE A 189 SER A 197 1 9 HELIX 9 9 THR A 211 ASP A 220 1 10 HELIX 10 10 ASP A 231 ALA A 236 5 6 HELIX 11 11 ASN A 240 ALA A 262 1 23 HELIX 12 12 ASP A 268 ALA A 270 5 3 HELIX 13 13 ASN A 459 ARG A 465 1 7 HELIX 14 14 SER A 468 GLU A 479 1 12 LINK OD2 ASP A 114 MG MG A 497 1555 1555 2.18 LINK OD1 ASN A 239 MG MG A 497 1555 1555 2.18 LINK OD1 ASP A 417 MG MG A 499 1555 1555 2.46 LINK MG MG A 497 O2A UD1 A 498 1555 1555 2.12 LINK MG MG A 497 O1B UD1 A 498 1555 1555 2.45 LINK MG MG A 497 O HOH A 711 1555 1555 2.17 LINK MG MG A 497 O HOH A 712 1555 1555 2.22 LINK MG MG A 499 O HOH A 501 1555 1555 1.73 CISPEP 1 GLY A 338 PRO A 339 0 4.47 CISPEP 2 ALA A 422 PRO A 423 0 0.71 SITE 1 AC1 5 ASP A 114 ASN A 239 UD1 A 498 HOH A 711 SITE 2 AC1 5 HOH A 712 SITE 1 AC2 3 SER A 392 ASP A 417 HOH A 501 SITE 1 AC3 24 GLY A 390 ALA A 391 VAL A 394 VAL A 396 SITE 2 AC3 24 ASN A 397 TYR A 398 THR A 414 GLY A 415 SITE 3 AC3 24 SER A 416 GLY A 433 ALA A 434 ARG A 439 SITE 4 AC3 24 VAL A 449 ALA A 451 ARG A 455 ILE A 457 SITE 5 AC3 24 TRP A 460 LYS A 464 ARG A 465 HOH A 516 SITE 6 AC3 24 HOH A 592 HOH A 632 HOH A 652 HOH A 694 SITE 1 AC4 25 LEU A 12 ALA A 13 ALA A 14 GLY A 15 SITE 2 AC4 25 ARG A 19 GLN A 83 PRO A 86 LEU A 87 SITE 3 AC4 25 GLY A 88 THR A 89 ALA A 92 ASP A 114 SITE 4 AC4 25 TYR A 150 GLY A 151 GLU A 166 ASN A 181 SITE 5 AC4 25 TYR A 209 THR A 211 ASN A 239 MG A 497 SITE 6 AC4 25 HOH A 527 HOH A 596 HOH A 704 HOH A 711 SITE 7 AC4 25 HOH A 712 CRYST1 110.194 110.194 361.295 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009075 0.005239 0.000000 0.00000 SCALE2 0.000000 0.010479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002768 0.00000