HEADER DNA BINDING PROTEIN/DNA 05-JUL-11 3SQI TITLE DNA BINDING DOMAIN OF NDC10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KLLA0E03807P; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN (RESIDUES 1-534); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*TP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*AP*AP*TP*T)- COMPND 8 3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: CENTROMERE DNA ELEMENT III; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*AP*AP*AP*TP*TP*TP*TP*AP*TP*AP*AP*AP*TP*TP*A)- COMPND 14 3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 284590; SOURCE 5 STRAIN: NRRL Y-1140; SOURCE 6 GENE: KLLA0E03807G; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHETIC CONSTRUCT; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: SYNTHETIC CONSTRUCT KEYWDS DNA RECOMBINASE, DNA BINDING, DNA, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR U.S.CHO,S.C.HARRISON REVDAT 4 28-FEB-24 3SQI 1 REMARK REVDAT 3 18-JAN-12 3SQI 1 JRNL REVDAT 2 28-DEC-11 3SQI 1 JRNL REVDAT 1 07-DEC-11 3SQI 0 JRNL AUTH U.S.CHO,S.C.HARRISON JRNL TITL NDC10 IS A PLATFORM FOR INNER KINETOCHORE ASSEMBLY IN JRNL TITL 2 BUDDING YEAST. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 48 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 22139014 JRNL DOI 10.1038/NSMB.2178 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 18554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3921 - 5.3996 0.99 2855 144 0.1822 0.2213 REMARK 3 2 5.3996 - 4.2872 1.00 2772 128 0.1596 0.2110 REMARK 3 3 4.2872 - 3.7457 1.00 2722 149 0.1647 0.2308 REMARK 3 4 3.7457 - 3.4034 0.98 2674 166 0.2153 0.2968 REMARK 3 5 3.4034 - 3.1596 0.89 2404 148 0.2565 0.3100 REMARK 3 6 3.1596 - 2.9733 0.83 2226 124 0.2769 0.3462 REMARK 3 7 2.9733 - 2.8245 0.71 1947 95 0.2990 0.3883 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 83.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.710 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 47.59000 REMARK 3 B22 (A**2) : -15.59820 REMARK 3 B33 (A**2) : -31.99180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3975 REMARK 3 ANGLE : 1.147 5530 REMARK 3 CHIRALITY : 0.071 619 REMARK 3 PLANARITY : 0.004 592 REMARK 3 DIHEDRAL : 20.736 1507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:31) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2652 14.2658 -43.7579 REMARK 3 T TENSOR REMARK 3 T11: 1.3647 T22: 0.7376 REMARK 3 T33: 0.9019 T12: 0.1507 REMARK 3 T13: -0.2084 T23: 0.1893 REMARK 3 L TENSOR REMARK 3 L11: 7.4586 L22: 8.0271 REMARK 3 L33: 2.9909 L12: -0.1782 REMARK 3 L13: 1.4724 L23: 4.0242 REMARK 3 S TENSOR REMARK 3 S11: -1.0087 S12: 0.3680 S13: 1.5280 REMARK 3 S21: -0.8934 S22: 0.5253 S23: 0.1499 REMARK 3 S31: -3.2212 S32: 0.1031 S33: 0.5294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 32:100) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6584 4.9022 -34.6502 REMARK 3 T TENSOR REMARK 3 T11: 1.1127 T22: 0.6599 REMARK 3 T33: 0.4735 T12: -0.1548 REMARK 3 T13: -0.1490 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 6.3526 L22: 8.8409 REMARK 3 L33: 5.7279 L12: -1.9835 REMARK 3 L13: 0.0061 L23: -2.5085 REMARK 3 S TENSOR REMARK 3 S11: -0.5265 S12: 0.1741 S13: 1.1808 REMARK 3 S21: -0.2331 S22: 0.2329 S23: -0.6216 REMARK 3 S31: -1.3984 S32: 0.8714 S33: 0.2135 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 101:149) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6640 -27.7680 -16.1735 REMARK 3 T TENSOR REMARK 3 T11: 1.0053 T22: 0.3667 REMARK 3 T33: 0.6500 T12: 0.4891 REMARK 3 T13: 0.1578 T23: -0.1254 REMARK 3 L TENSOR REMARK 3 L11: 6.2211 L22: 2.4727 REMARK 3 L33: 7.5630 L12: 2.7900 REMARK 3 L13: -0.4784 L23: 0.1720 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: -0.2054 S13: -0.6457 REMARK 3 S21: 0.0968 S22: 0.0588 S23: 0.0822 REMARK 3 S31: 2.4515 S32: 0.8012 S33: 0.0525 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 150:210) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3205 -13.5118 -11.2116 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.5392 REMARK 3 T33: 0.5351 T12: 0.1918 REMARK 3 T13: 0.0318 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.8253 L22: 7.7683 REMARK 3 L33: 7.2558 L12: -0.5105 REMARK 3 L13: -0.9218 L23: -2.5780 REMARK 3 S TENSOR REMARK 3 S11: -0.0379 S12: 0.2850 S13: 0.3522 REMARK 3 S21: 0.2961 S22: -0.1648 S23: -0.5574 REMARK 3 S31: 0.0984 S32: 0.8743 S33: 0.1061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 211:310) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2668 -20.1033 -15.6087 REMARK 3 T TENSOR REMARK 3 T11: 0.8057 T22: 0.8457 REMARK 3 T33: 0.3887 T12: 0.3416 REMARK 3 T13: -0.0494 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.6626 L22: 4.0166 REMARK 3 L33: 7.9645 L12: -2.8094 REMARK 3 L13: 2.2026 L23: -2.0169 REMARK 3 S TENSOR REMARK 3 S11: -0.2671 S12: 0.1697 S13: 0.1025 REMARK 3 S21: 0.4717 S22: -0.0622 S23: -0.4484 REMARK 3 S31: 1.1030 S32: 1.5057 S33: 0.3033 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 311:376) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7834 -18.0296 0.8064 REMARK 3 T TENSOR REMARK 3 T11: 0.9732 T22: 0.6157 REMARK 3 T33: 0.5373 T12: 0.2751 REMARK 3 T13: 0.0468 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 5.5059 L22: 5.9574 REMARK 3 L33: 5.0933 L12: 2.9537 REMARK 3 L13: -3.5236 L23: -1.3859 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: -1.0518 S13: 0.1150 REMARK 3 S21: 1.2435 S22: 0.0520 S23: 0.2568 REMARK 3 S31: 0.2559 S32: 0.4397 S33: -0.2094 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 377:402) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2631 -27.6013 -9.0862 REMARK 3 T TENSOR REMARK 3 T11: 2.2733 T22: 0.8651 REMARK 3 T33: 1.0283 T12: -0.0401 REMARK 3 T13: -0.1222 T23: -0.0666 REMARK 3 L TENSOR REMARK 3 L11: 5.4729 L22: 2.7643 REMARK 3 L33: 6.9380 L12: -3.1485 REMARK 3 L13: -4.2444 L23: 3.3550 REMARK 3 S TENSOR REMARK 3 S11: -1.1898 S12: 0.2972 S13: -0.9812 REMARK 3 S21: 1.2593 S22: 0.2194 S23: 1.1619 REMARK 3 S31: 2.2548 S32: -0.6423 S33: 1.0897 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 32.0447 -37.5917 -26.3093 REMARK 3 T TENSOR REMARK 3 T11: 2.2057 T22: 1.8502 REMARK 3 T33: 0.6018 T12: 0.8664 REMARK 3 T13: 0.0640 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.5079 L22: 1.3523 REMARK 3 L33: 5.8742 L12: 0.9175 REMARK 3 L13: 1.6280 L23: 1.1841 REMARK 3 S TENSOR REMARK 3 S11: 0.2283 S12: 0.3616 S13: -0.8024 REMARK 3 S21: 0.1272 S22: 0.0839 S23: 0.1369 REMARK 3 S31: 0.3734 S32: 2.2268 S33: 0.0394 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 30.5415 -39.2483 -21.8304 REMARK 3 T TENSOR REMARK 3 T11: 2.1549 T22: 1.6172 REMARK 3 T33: 0.7069 T12: 0.9510 REMARK 3 T13: 0.2156 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 4.7613 L22: 5.6971 REMARK 3 L33: 2.6829 L12: 1.8361 REMARK 3 L13: 1.1860 L23: 3.4367 REMARK 3 S TENSOR REMARK 3 S11: 0.4067 S12: 0.5196 S13: -0.2952 REMARK 3 S21: -1.0087 S22: -0.2365 S23: -0.2097 REMARK 3 S31: 2.2162 S32: 2.0098 S33: 0.2556 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : THE PHASE 2 MONOCHROMATOR USING REMARK 200 SI (220) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18620 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : 0.62600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG400, 0.1 M MES PH 6.0, 0.2 M REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.81950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.81950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.65150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.76800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.65150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.76800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.81950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.65150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 73.76800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.81950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.65150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 73.76800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 36 REMARK 465 THR A 37 REMARK 465 GLY A 38 REMARK 465 ALA A 39 REMARK 465 ASP A 283 REMARK 465 SER A 284 REMARK 465 SER A 285 REMARK 465 GLU A 286 REMARK 465 ASN A 287 REMARK 465 THR A 288 REMARK 465 SER A 289 REMARK 465 THR A 290 REMARK 465 LEU A 291 REMARK 465 ALA A 292 REMARK 465 GLU A 403 REMARK 465 LEU A 404 REMARK 465 VAL A 405 REMARK 465 PRO A 406 REMARK 465 ASN A 407 REMARK 465 PRO A 408 REMARK 465 VAL A 409 REMARK 465 LYS A 410 REMARK 465 ILE A 411 REMARK 465 ASP A 412 REMARK 465 GLN A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 HIS A 416 REMARK 465 THR A 417 REMARK 465 LEU A 418 REMARK 465 THR A 419 REMARK 465 PRO A 420 REMARK 465 ILE A 421 REMARK 465 GLY A 422 REMARK 465 THR A 423 REMARK 465 SER A 424 REMARK 465 LEU A 425 REMARK 465 SER A 426 REMARK 465 GLN A 427 REMARK 465 THR A 428 REMARK 465 ASP A 429 REMARK 465 ILE A 430 REMARK 465 PRO A 431 REMARK 465 MET A 432 REMARK 465 LEU A 433 REMARK 465 ASP A 434 REMARK 465 GLN A 435 REMARK 465 LEU A 436 REMARK 465 LYS A 437 REMARK 465 THR A 438 REMARK 465 GLU A 439 REMARK 465 LEU A 440 REMARK 465 GLN A 441 REMARK 465 LYS A 442 REMARK 465 LEU A 443 REMARK 465 ILE A 444 REMARK 465 GLN A 445 REMARK 465 LEU A 446 REMARK 465 GLN A 447 REMARK 465 THR A 448 REMARK 465 SER A 449 REMARK 465 THR A 450 REMARK 465 GLY A 451 REMARK 465 PHE A 452 REMARK 465 SER A 453 REMARK 465 GLN A 454 REMARK 465 LEU A 455 REMARK 465 ILE A 456 REMARK 465 THR A 457 REMARK 465 VAL A 458 REMARK 465 LEU A 459 REMARK 465 LEU A 460 REMARK 465 GLU A 461 REMARK 465 ILE A 462 REMARK 465 PHE A 463 REMARK 465 GLN A 464 REMARK 465 ARG A 465 REMARK 465 LEU A 466 REMARK 465 ASP A 467 REMARK 465 PHE A 468 REMARK 465 LYS A 469 REMARK 465 LYS A 470 REMARK 465 SER A 471 REMARK 465 ASN A 472 REMARK 465 LYS A 473 REMARK 465 GLN A 474 REMARK 465 PHE A 475 REMARK 465 VAL A 476 REMARK 465 ILE A 477 REMARK 465 ASP A 478 REMARK 465 LEU A 479 REMARK 465 LEU A 480 REMARK 465 GLN A 481 REMARK 465 SER A 482 REMARK 465 CYS A 483 REMARK 465 ARG A 484 REMARK 465 LYS A 485 REMARK 465 ASP A 486 REMARK 465 MET A 487 REMARK 465 ARG A 488 REMARK 465 ASN A 489 REMARK 465 LYS A 490 REMARK 465 LEU A 491 REMARK 465 MET A 492 REMARK 465 ASP A 493 REMARK 465 PRO A 494 REMARK 465 CYS A 495 REMARK 465 SER A 496 REMARK 465 LEU A 497 REMARK 465 SER A 498 REMARK 465 THR A 499 REMARK 465 ASN A 500 REMARK 465 PHE A 501 REMARK 465 ALA A 502 REMARK 465 ASP A 503 REMARK 465 GLU A 504 REMARK 465 LEU A 505 REMARK 465 SER A 506 REMARK 465 ASP A 507 REMARK 465 ASP A 508 REMARK 465 GLU A 509 REMARK 465 ASN A 510 REMARK 465 GLU A 511 REMARK 465 LYS A 512 REMARK 465 GLY A 513 REMARK 465 ASN A 514 REMARK 465 LYS A 515 REMARK 465 THR A 516 REMARK 465 GLY A 517 REMARK 465 ALA A 518 REMARK 465 ILE A 519 REMARK 465 TYR A 520 REMARK 465 ASP A 521 REMARK 465 PRO A 522 REMARK 465 GLU A 523 REMARK 465 THR A 524 REMARK 465 ASP A 525 REMARK 465 ASN A 526 REMARK 465 GLY A 527 REMARK 465 ASN A 528 REMARK 465 GLU A 529 REMARK 465 GLU A 530 REMARK 465 SER A 531 REMARK 465 VAL A 532 REMARK 465 SER A 533 REMARK 465 ASP A 534 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 86 NE2 GLN A 90 2.12 REMARK 500 NH1 ARG A 156 O TRP A 268 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 2 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA B 4 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT B 5 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA B 8 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT B 15 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DT B 15 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA C 3 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT C 4 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 6 C1' - O4' - C4' ANGL. DEV. = -9.2 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT C 9 C3' - C2' - C1' ANGL. DEV. = -7.6 DEGREES REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 10 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 DA C 10 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 12 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 -76.89 -125.79 REMARK 500 SER A 75 -70.46 -56.05 REMARK 500 LEU A 110 -70.27 -52.90 REMARK 500 PHE A 210 -62.15 -100.41 REMARK 500 LYS A 215 -6.20 76.53 REMARK 500 SER A 226 -61.85 -106.89 REMARK 500 PRO A 279 -179.31 -67.59 REMARK 500 THR A 299 -74.52 -108.99 REMARK 500 ILE A 300 -72.16 -94.69 REMARK 500 VAL A 355 -61.22 -93.30 REMARK 500 PHE A 356 72.88 -115.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 3SQI A 1 534 UNP Q6CPM4 Q6CPM4_KLULA 1 534 DBREF 3SQI B 1 15 PDB 3SQI 3SQI 1 15 DBREF 3SQI C 1 15 PDB 3SQI 3SQI 1 15 SEQRES 1 A 534 MET SER LYS LEU ASP SER LEU LEU LYS GLU LEU PRO THR SEQRES 2 A 534 ARG THR ALA HIS LEU TYR ARG SER ILE TRP HIS LYS TYR SEQRES 3 A 534 THR GLU TRP LEU LYS THR MET PRO ASP LEU THR GLY ALA SEQRES 4 A 534 ASP LEU LYS LEU PHE LEU SER GLN LYS TYR ILE VAL LYS SEQRES 5 A 534 TYR ILE ALA SER HIS ASP ASP ILE ALA LYS ASP PRO LEU SEQRES 6 A 534 PRO THR CYS ASP ALA MET ILE TRP PHE SER ARG ALA LEU SEQRES 7 A 534 ASP ILE GLU ASN ASN ASP VAL LEU VAL LEU GLN GLN ARG SEQRES 8 A 534 LEU TYR GLY LEU VAL LYS LEU LEU GLU PHE ASP TYR SER SEQRES 9 A 534 ASN VAL ILE ALA ILE LEU GLN LYS ILE SER ILE ASN LEU SEQRES 10 A 534 TRP ASN PRO SER THR ASP SER LEU GLN SER LYS HIS PHE SEQRES 11 A 534 LYS THR CYS GLN ASP LYS LEU LYS LEU LEU LEU ASP PHE SEQRES 12 A 534 GLN TRP LYS PHE ASN THR ASN VAL SER PHE GLU ASP ARG SEQRES 13 A 534 THR THR VAL SER LEU LYS ASP LEU GLN CYS ILE LEU ASP SEQRES 14 A 534 ASP GLU ASN GLY LYS CYS GLY LEU ALA HIS SER SER LYS SEQRES 15 A 534 PRO ASN PHE VAL LEU VAL PRO ASN PHE GLN SER PRO PHE SEQRES 16 A 534 THR CYS PRO ILE PHE THR MET ALA VAL TYR TYR TYR LEU SEQRES 17 A 534 ARG PHE HIS GLY VAL LYS LYS TYR TYR LYS GLY ASP GLY SEQRES 18 A 534 TYR GLN ILE LEU SER GLN LEU GLU HIS ILE PRO ILE ILE SEQRES 19 A 534 ARG GLY LYS SER LEU ASP GLN TYR PRO ARG GLU LEU THR SEQRES 20 A 534 LEU GLY ASN TRP TYR PRO THR ILE PHE LYS TYR CYS GLN SEQRES 21 A 534 LEU PRO TYR THR LYS LYS HIS TRP PHE GLN VAL ASN GLN SEQRES 22 A 534 GLU TRP PRO GLN PHE PRO ASP PHE SER ASP SER SER GLU SEQRES 23 A 534 ASN THR SER THR LEU ALA GLU SER ASP SER GLU ASN THR SEQRES 24 A 534 ILE GLY ILE PRO ASP PHE TYR ILE GLU LYS MET ASN ARG SEQRES 25 A 534 THR LYS LEU GLN PRO CYS PRO GLN VAL HIS VAL HIS LEU SEQRES 26 A 534 PHE PRO THR ASP LEU PRO PRO ASP ILE GLN ALA VAL PHE SEQRES 27 A 534 ASP LEU LEU ASN SER VAL LEU VAL THR SER LEU PRO LEU SEQRES 28 A 534 LEU TYR ARG VAL PHE PRO THR HIS ASP ILE PHE LEU ASP SEQRES 29 A 534 PRO SER LEU LYS THR PRO GLN ASN ILE ALA PHE LEU THR SEQRES 30 A 534 GLY THR LEU PRO LEU ASP ILE GLU SER GLN GLU HIS LEU SEQRES 31 A 534 LEU ALA GLN LEU ILE ASP LYS THR GLY THR VAL SER GLU SEQRES 32 A 534 LEU VAL PRO ASN PRO VAL LYS ILE ASP GLN ASN GLU HIS SEQRES 33 A 534 THR LEU THR PRO ILE GLY THR SER LEU SER GLN THR ASP SEQRES 34 A 534 ILE PRO MET LEU ASP GLN LEU LYS THR GLU LEU GLN LYS SEQRES 35 A 534 LEU ILE GLN LEU GLN THR SER THR GLY PHE SER GLN LEU SEQRES 36 A 534 ILE THR VAL LEU LEU GLU ILE PHE GLN ARG LEU ASP PHE SEQRES 37 A 534 LYS LYS SER ASN LYS GLN PHE VAL ILE ASP LEU LEU GLN SEQRES 38 A 534 SER CYS ARG LYS ASP MET ARG ASN LYS LEU MET ASP PRO SEQRES 39 A 534 CYS SER LEU SER THR ASN PHE ALA ASP GLU LEU SER ASP SEQRES 40 A 534 ASP GLU ASN GLU LYS GLY ASN LYS THR GLY ALA ILE TYR SEQRES 41 A 534 ASP PRO GLU THR ASP ASN GLY ASN GLU GLU SER VAL SER SEQRES 42 A 534 ASP SEQRES 1 B 15 DT DT DA DA DT DT DT DA DT DA DA DA DA SEQRES 2 B 15 DT DT SEQRES 1 C 15 DA DA DA DT DT DT DT DA DT DA DA DA DT SEQRES 2 C 15 DT DA HELIX 1 1 MET A 1 LYS A 9 5 9 HELIX 2 2 PRO A 12 LYS A 31 1 20 HELIX 3 3 LEU A 41 LEU A 45 5 5 HELIX 4 4 SER A 46 HIS A 57 1 12 HELIX 5 5 HIS A 57 ASP A 63 1 7 HELIX 6 6 PRO A 64 ALA A 77 1 14 HELIX 7 7 GLU A 81 PHE A 101 1 21 HELIX 8 8 VAL A 106 ASN A 119 1 14 HELIX 9 9 THR A 132 ASN A 150 1 19 HELIX 10 10 SER A 152 VAL A 159 1 8 HELIX 11 11 SER A 193 THR A 196 5 4 HELIX 12 12 CYS A 197 HIS A 211 1 15 HELIX 13 13 GLN A 223 LEU A 228 1 6 HELIX 14 14 ARG A 244 GLN A 260 1 17 HELIX 15 15 THR A 264 GLN A 270 1 7 HELIX 16 16 PRO A 303 ASN A 311 1 9 HELIX 17 17 PRO A 331 PHE A 356 1 26 HELIX 18 18 HIS A 359 ASP A 364 5 6 HELIX 19 19 PRO A 365 LYS A 368 5 4 HELIX 20 20 THR A 369 THR A 377 1 9 HELIX 21 21 ASP A 383 SER A 386 5 4 HELIX 22 22 GLN A 387 ALA A 392 1 6 SHEET 1 A 3 GLN A 165 ASP A 169 0 SHEET 2 A 3 LYS A 174 HIS A 179 -1 O LYS A 174 N ASP A 169 SHEET 3 A 3 PHE A 185 LEU A 187 -1 O LEU A 187 N LEU A 177 SHEET 1 B 2 GLY A 212 VAL A 213 0 SHEET 2 B 2 TYR A 217 LYS A 218 -1 O TYR A 217 N VAL A 213 CRYST1 117.303 147.536 95.639 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010456 0.00000