HEADER ISOMERASE 06-JUL-11 3SQS TITLE CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE TITLE 2 LACTONIZING PROTEIN FROM DINOROSEOBACTER SHIBAE DFL 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DINOROSEOBACTER SHIBAE; SOURCE 3 ORGANISM_TAXID: 398580; SOURCE 4 STRAIN: DFL 12; SOURCE 5 GENE: DSHI_2447; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PSI-BIOLOGY, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, TIM KEYWDS 2 BARREL, ENOLASE/MANDELATE RACEMASE, ISOMERASE, NEW YORK STRUCTURAL KEYWDS 3 GENOMICS RESEARCH CONSORTIUM, NYSGRC EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.C.ALMO,S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS AUTHOR 2 RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 13-SEP-23 3SQS 1 REMARK SEQADV LINK REVDAT 3 02-APR-14 3SQS 1 REMARK REVDAT 2 21-MAR-12 3SQS 1 KEYWDS REVDAT 1 27-JUL-11 3SQS 0 JRNL AUTH D.KUMARAN,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE JRNL TITL 2 LACTONIZING PROTEIN FROM DINOROSEOBACTER SHIBAE DFL 12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 126614.330 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 42753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2142 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6536 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 334 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.34000 REMARK 3 B22 (A**2) : 3.34000 REMARK 3 B33 (A**2) : -6.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 49.10 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : LIG.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : LIG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXTRA DENSITY NEAR SG ATOM OF CYS 48 REMARK 3 WAS NOT MODELED REMARK 4 REMARK 4 3SQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 26.60 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OZ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1 M TRIS, 25% REMARK 280 PEG 4K, 15% GLYCEROL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.65200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.60800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 68.65200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 57.60800 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.65200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 57.60800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 68.65200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 57.60800 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.65200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.60800 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.65200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 57.60800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 68.65200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 57.60800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.65200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.65200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.60800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: OCTAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 45600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -315.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 718 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 GLU A 16 REMARK 465 ASN A 17 REMARK 465 LEU A 18 REMARK 465 TYR A 19 REMARK 465 PHE A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 GLN A 58 REMARK 465 GLY A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 MET A 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 43 -9.61 -40.42 REMARK 500 PHE A 47 131.10 -175.33 REMARK 500 SER A 64 117.18 -39.85 REMARK 500 PHE A 65 79.05 -54.80 REMARK 500 ALA A 90 62.56 26.50 REMARK 500 LYS A 175 -143.77 171.03 REMARK 500 LEU A 176 65.78 77.72 REMARK 500 ASP A 179 -165.73 -164.94 REMARK 500 TRP A 242 -169.78 -111.74 REMARK 500 SER A 293 165.75 73.41 REMARK 500 ARG A 315 -46.56 -135.02 REMARK 500 ALA A 340 142.68 84.13 REMARK 500 GLU A 367 -75.94 -125.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 450 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 237 OE2 REMARK 620 2 GLU A 263 OE2 80.5 REMARK 620 3 GLU A 289 OE1 171.3 99.2 REMARK 620 4 HOH A 607 O 84.4 84.9 87.0 REMARK 620 5 HOH A 721 O 89.6 164.2 92.4 106.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 451 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 374 O REMARK 620 2 PHE A 377 O 80.3 REMARK 620 3 ASP A 378 OD1 159.7 86.8 REMARK 620 4 HOH A 575 O 86.9 99.7 79.7 REMARK 620 5 HOH A 722 O 98.9 90.5 96.9 169.0 REMARK 620 6 HOH A 723 O 93.2 169.0 101.7 88.7 81.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200645 RELATED DB: TARGETDB DBREF 3SQS A 23 413 UNP A8LS88 A8LS88_DINSH 1 391 SEQADV 3SQS MET A 1 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS HIS A 2 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS HIS A 3 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS HIS A 4 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS HIS A 5 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS HIS A 6 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS HIS A 7 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS SER A 8 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS SER A 9 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS GLY A 10 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS VAL A 11 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS ASP A 12 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS LEU A 13 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS GLY A 14 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS THR A 15 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS GLU A 16 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS ASN A 17 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS LEU A 18 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS TYR A 19 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS PHE A 20 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS GLN A 21 UNP A8LS88 EXPRESSION TAG SEQADV 3SQS SER A 22 UNP A8LS88 EXPRESSION TAG SEQRES 1 A 413 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 413 GLY THR GLU ASN LEU TYR PHE GLN SER MET THR LYS ILE SEQRES 3 A 413 LYS SER VAL ARG THR ARG VAL TRP ASN TRP THR GLY PRO SEQRES 4 A 413 THR VAL PRO PRO GLN GLY ASN PHE CYS THR ASN ALA SER SEQRES 5 A 413 ASP ALA LEU TRP ILE GLN GLY ASP ALA MET ALA SER PHE SEQRES 6 A 413 ARG PHE HIS GLN TRP LEU THR CYS GLU VAL GLU THR GLU SEQRES 7 A 413 ASP GLY THR ILE GLY ILE GLY ASN ALA ALA LEU ALA PRO SEQRES 8 A 413 ASN VAL VAL LYS GLN ALA ILE ASP GLU TRP TYR ALA PRO SEQRES 9 A 413 LEU VAL ILE GLY GLU ASP PRO PHE ASP TYR ALA TYR LEU SEQRES 10 A 413 TRP GLU LYS MET TYR ARG ARG THR HIS ALA TRP GLY ARG SEQRES 11 A 413 LYS GLY ILE GLY MET THR ALA ILE SER ALA ILE ASP ILE SEQRES 12 A 413 ALA ILE TRP ASP LEU MET GLY LYS LEU VAL GLY LYS PRO SEQRES 13 A 413 VAL PHE LYS LEU LEU GLY GLY ARG THR LYS GLU LYS ILE SEQRES 14 A 413 PRO VAL TYR TYR SER LYS LEU TYR ALA ASP SER ILE PRO SEQRES 15 A 413 ALA MET GLN ALA GLU ALA GLU GLU ALA GLN LYS HIS GLY SEQRES 16 A 413 TYR GLN GLY TYR LYS THR ARG PHE GLY TYR GLY PRO LYS SEQRES 17 A 413 ASP GLY PRO ALA GLY MET ARG GLU ASN LEU LYS ARG VAL SEQRES 18 A 413 GLU ALA LEU ARG GLU VAL LEU GLY TYR ASP VAL ASP LEU SEQRES 19 A 413 MET LEU GLU CYS TYR MET GLY TRP ASN LEU ASP TYR THR SEQRES 20 A 413 LYS ARG MET LEU PRO LYS LEU GLU ARG PHE GLU PRO ARG SEQRES 21 A 413 TRP LEU GLU GLU PRO VAL ILE ALA ASP ASP VAL ALA GLY SEQRES 22 A 413 TYR ALA GLU LEU ASN ALA MET GLY ILE VAL PRO ILE SER SEQRES 23 A 413 GLY GLY GLU HIS GLU PHE SER VAL MET GLY CYS ALA GLU SEQRES 24 A 413 LEU ILE ASN ARG LYS ALA VAL SER VAL LEU GLN TYR ASP SEQRES 25 A 413 THR ASN ARG VAL GLY GLY ILE THR ALA ALA GLN LYS ILE SEQRES 26 A 413 ASN ALA ILE ALA GLU ALA ALA GLN ILE ILE VAL ILE PRO SEQRES 27 A 413 HIS ALA GLY GLN MET HIS ASN TYR HIS LEU THR MET ALA SEQRES 28 A 413 ASN MET ASN CYS PRO ILE SER GLU TYR PHE PRO VAL PHE SEQRES 29 A 413 ASP VAL GLU VAL GLY ASN GLU LEU PHE TYR TYR ILE PHE SEQRES 30 A 413 ASP GLY ASP PRO GLU ALA VAL ASP GLY TYR LEU GLN LEU SEQRES 31 A 413 ASP ASP ASP THR PRO GLY LEU GLY ILE THR ILE SER ASP SEQRES 32 A 413 ALA HIS LEU LYS HIS PHE GLU ILE THR GLU HET MG A 450 1 HET MG A 451 1 HET GOL A 500 6 HET ACT A 501 4 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *306(H2 O) HELIX 1 1 ASN A 50 LEU A 55 5 6 HELIX 2 2 ALA A 90 TRP A 101 1 12 HELIX 3 3 TYR A 102 ILE A 107 1 6 HELIX 4 4 ASP A 110 PHE A 112 5 3 HELIX 5 5 ASP A 113 THR A 125 1 13 HELIX 6 6 THR A 125 ARG A 130 1 6 HELIX 7 7 GLY A 132 GLY A 154 1 23 HELIX 8 8 PRO A 156 GLY A 162 1 7 HELIX 9 9 SER A 180 LYS A 193 1 14 HELIX 10 10 GLY A 206 LYS A 208 5 3 HELIX 11 11 ASP A 209 GLY A 229 1 21 HELIX 12 12 ASN A 243 GLU A 255 1 13 HELIX 13 13 ARG A 256 GLU A 258 5 3 HELIX 14 14 ASP A 270 MET A 280 1 11 HELIX 15 15 SER A 293 ARG A 303 1 11 HELIX 16 16 ASP A 312 GLY A 317 1 6 HELIX 17 17 GLY A 318 GLN A 333 1 16 HELIX 18 18 GLN A 342 ALA A 351 1 10 HELIX 19 19 LEU A 372 ILE A 376 1 5 HELIX 20 20 HIS A 405 LYS A 407 5 3 SHEET 1 A 4 ILE A 82 ALA A 87 0 SHEET 2 A 4 GLN A 69 THR A 77 -1 N CYS A 73 O GLY A 85 SHEET 3 A 4 ILE A 26 TRP A 36 -1 N TRP A 34 O TRP A 70 SHEET 4 A 4 PHE A 409 THR A 412 -1 O THR A 412 N VAL A 33 SHEET 1 B 8 ILE A 335 VAL A 336 0 SHEET 2 B 8 VAL A 308 LEU A 309 1 N LEU A 309 O ILE A 335 SHEET 3 B 8 ILE A 285 GLY A 287 1 N GLY A 287 O VAL A 308 SHEET 4 B 8 TRP A 261 GLU A 263 1 N LEU A 262 O SER A 286 SHEET 5 B 8 ASP A 233 GLU A 237 1 N LEU A 236 O GLU A 263 SHEET 6 B 8 GLY A 198 ARG A 202 1 N TYR A 199 O MET A 235 SHEET 7 B 8 ILE A 169 SER A 174 1 N TYR A 173 O LYS A 200 SHEET 8 B 8 SER A 358 TYR A 360 1 O TYR A 360 N SER A 174 SHEET 1 C 8 ILE A 335 VAL A 336 0 SHEET 2 C 8 VAL A 308 LEU A 309 1 N LEU A 309 O ILE A 335 SHEET 3 C 8 ILE A 285 GLY A 287 1 N GLY A 287 O VAL A 308 SHEET 4 C 8 TRP A 261 GLU A 263 1 N LEU A 262 O SER A 286 SHEET 5 C 8 ASP A 233 GLU A 237 1 N LEU A 236 O GLU A 263 SHEET 6 C 8 GLY A 198 ARG A 202 1 N TYR A 199 O MET A 235 SHEET 7 C 8 ILE A 169 SER A 174 1 N TYR A 173 O LYS A 200 SHEET 8 C 8 TYR A 387 LEU A 388 -1 O LEU A 388 N ILE A 169 SHEET 1 D 2 PHE A 377 ASP A 378 0 SHEET 2 D 2 THR A 400 ILE A 401 -1 O THR A 400 N ASP A 378 LINK OE2 GLU A 237 MG MG A 450 1555 1555 2.17 LINK OE2 GLU A 263 MG MG A 450 1555 1555 2.23 LINK OE1 GLU A 289 MG MG A 450 1555 1555 2.14 LINK O TYR A 374 MG MG A 451 1555 1555 2.24 LINK O PHE A 377 MG MG A 451 1555 1555 2.39 LINK OD1 ASP A 378 MG MG A 451 1555 1555 2.36 LINK MG MG A 450 O HOH A 607 1555 1555 2.48 LINK MG MG A 450 O HOH A 721 1555 1555 2.01 LINK MG MG A 451 O HOH A 575 1555 1555 2.37 LINK MG MG A 451 O HOH A 722 1555 1555 2.16 LINK MG MG A 451 O HOH A 723 1555 1555 2.21 SITE 1 AC1 5 GLU A 237 GLU A 263 GLU A 289 HOH A 607 SITE 2 AC1 5 HOH A 721 SITE 1 AC2 6 TYR A 374 PHE A 377 ASP A 378 HOH A 575 SITE 2 AC2 6 HOH A 722 HOH A 723 SITE 1 AC3 7 LYS A 131 ASP A 269 VAL A 271 GLY A 296 SITE 2 AC3 7 HOH A 434 HOH A 464 HOH A 626 SITE 1 AC4 6 VAL A 171 GLN A 197 GLY A 198 ASP A 233 SITE 2 AC4 6 HOH A 638 HOH A 712 CRYST1 137.304 137.304 115.216 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008680 0.00000