HEADER HYDROLASE/RNA 06-JUL-11 3SQW TITLE STRUCTURE OF MSS116P (NTE DELETION) BOUND TO SSRNA AND AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 88-664; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MSS116, YD9346.05C, YDR194C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHESIZED KEYWDS RECA FOLD, RNA DEPENDENT ATPASE, RNA HELICASE, MITOCHONDRION, KEYWDS 2 HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DEL CAMPO,A.M.LAMBOWITZ REVDAT 3 13-SEP-23 3SQW 1 REMARK SEQADV REVDAT 2 30-NOV-11 3SQW 1 JRNL REVDAT 1 12-OCT-11 3SQW 0 JRNL AUTH G.MOHR,M.DEL CAMPO,K.G.TURNER,B.GILMAN,R.Z.WOLF, JRNL AUTH 2 A.M.LAMBOWITZ JRNL TITL HIGH-THROUGHPUT GENETIC IDENTIFICATION OF FUNCTIONALLY JRNL TITL 2 IMPORTANT REGIONS OF THE YEAST DEAD-BOX PROTEIN MSS116P. JRNL REF J.MOL.BIOL. V. 413 952 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21945532 JRNL DOI 10.1016/J.JMB.2011.09.015 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 45960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3994 REMARK 3 NUCLEIC ACID ATOMS : 137 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.93000 REMARK 3 B33 (A**2) : 1.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4287 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5831 ; 1.292 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 521 ; 5.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;36.715 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;13.683 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3087 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 809 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2559 ; 0.560 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1023 ; 0.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4166 ; 1.067 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 1.771 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1658 ; 2.924 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 479 REMARK 3 ORIGIN FOR THE GROUP (A): 72.8610 29.9770 12.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.1731 REMARK 3 T33: 0.4163 T12: 0.0224 REMARK 3 T13: 0.0143 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.6279 L22: 1.8900 REMARK 3 L33: 0.5263 L12: 0.5535 REMARK 3 L13: 0.0692 L23: -0.4517 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.1922 S13: 0.1823 REMARK 3 S21: 0.2744 S22: 0.0039 S23: 0.0548 REMARK 3 S31: -0.1161 S32: 0.0364 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 480 A 560 REMARK 3 ORIGIN FOR THE GROUP (A): 70.2420 1.3420 15.5820 REMARK 3 T TENSOR REMARK 3 T11: 0.2667 T22: 0.1590 REMARK 3 T33: 0.5453 T12: 0.0545 REMARK 3 T13: -0.0181 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 1.7993 L22: 3.0220 REMARK 3 L33: 2.4590 L12: 0.4939 REMARK 3 L13: -0.0988 L23: 0.2136 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.2357 S13: -0.3719 REMARK 3 S21: 0.2282 S22: 0.1181 S23: 0.0254 REMARK 3 S31: 0.1363 S32: 0.0789 S33: -0.0853 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 561 A 595 REMARK 3 ORIGIN FOR THE GROUP (A): 78.9100 -10.2240 6.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.0789 REMARK 3 T33: 0.6559 T12: 0.1006 REMARK 3 T13: 0.0455 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 10.6957 L22: 4.8773 REMARK 3 L33: 6.0120 L12: -5.2726 REMARK 3 L13: 2.2784 L23: -2.5889 REMARK 3 S TENSOR REMARK 3 S11: 0.3806 S12: 0.2908 S13: -0.3326 REMARK 3 S21: -0.6969 S22: -0.1918 S23: -0.2236 REMARK 3 S31: 0.7251 S32: 0.5255 S33: -0.1888 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): 79.3900 11.4580 4.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.2178 REMARK 3 T33: 0.5499 T12: -0.0039 REMARK 3 T13: 0.0636 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 6.6853 L22: 31.4602 REMARK 3 L33: 0.8853 L12: 2.2961 REMARK 3 L13: -1.5264 L23: -0.0609 REMARK 3 S TENSOR REMARK 3 S11: -0.2875 S12: 0.1001 S13: -0.9490 REMARK 3 S21: -1.0411 S22: 0.2794 S23: -1.8699 REMARK 3 S31: 0.0641 S32: 0.1692 S33: 0.0082 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 83.2820 22.5050 -3.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.5380 T22: 0.4116 REMARK 3 T33: 0.6234 T12: -0.1890 REMARK 3 T13: 0.1956 T23: -0.1428 REMARK 3 L TENSOR REMARK 3 L11: 28.1580 L22: 6.4785 REMARK 3 L33: 12.1178 L12: 6.6278 REMARK 3 L13: -2.7516 L23: -3.9414 REMARK 3 S TENSOR REMARK 3 S11: -0.6849 S12: 0.7220 S13: -1.9045 REMARK 3 S21: -1.4611 S22: 0.6670 S23: -1.0008 REMARK 3 S31: 0.0378 S32: 1.0933 S33: 0.0180 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 800 A 800 REMARK 3 ORIGIN FOR THE GROUP (A): 65.4580 33.9540 16.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.0599 REMARK 3 T33: 0.2378 T12: 0.0307 REMARK 3 T13: 0.0636 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 2.7010 L22: 4.8260 REMARK 3 L33: 3.8184 L12: 3.6103 REMARK 3 L13: 3.2112 L23: 4.2925 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: -0.1836 S13: 0.2385 REMARK 3 S21: -0.1030 S22: -0.2279 S23: 0.3192 REMARK 3 S31: -0.0946 S32: -0.2141 S33: 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: PDB ENTRY 3I5X CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM ACETATE, 20 MM MGCL2, REMARK 280 50 MM HEPES-NA PH 7.0, AND 5% POLYETHYLENE GLYCOL 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.07950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.07950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 ASP A 596 REMARK 465 TYR A 597 REMARK 465 SER A 598 REMARK 465 SER A 599 REMARK 465 ARG A 600 REMARK 465 ASP A 601 REMARK 465 GLY A 602 REMARK 465 ASN A 603 REMARK 465 ASN A 604 REMARK 465 LYS A 605 REMARK 465 SER A 606 REMARK 465 TYR A 607 REMARK 465 ASP A 608 REMARK 465 TYR A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 ASP A 612 REMARK 465 SER A 613 REMARK 465 GLU A 614 REMARK 465 ILE A 615 REMARK 465 SER A 616 REMARK 465 PHE A 617 REMARK 465 ARG A 618 REMARK 465 GLY A 619 REMARK 465 ASN A 620 REMARK 465 LYS A 621 REMARK 465 ASN A 622 REMARK 465 TYR A 623 REMARK 465 ASN A 624 REMARK 465 ASN A 625 REMARK 465 ARG A 626 REMARK 465 SER A 627 REMARK 465 GLN A 628 REMARK 465 ASN A 629 REMARK 465 ARG A 630 REMARK 465 ASP A 631 REMARK 465 TYR A 632 REMARK 465 ASP A 633 REMARK 465 ASP A 634 REMARK 465 GLU A 635 REMARK 465 PRO A 636 REMARK 465 PHE A 637 REMARK 465 ARG A 638 REMARK 465 ARG A 639 REMARK 465 SER A 640 REMARK 465 ASN A 641 REMARK 465 ASN A 642 REMARK 465 ASN A 643 REMARK 465 ARG A 644 REMARK 465 ARG A 645 REMARK 465 SER A 646 REMARK 465 PHE A 647 REMARK 465 SER A 648 REMARK 465 ARG A 649 REMARK 465 SER A 650 REMARK 465 ASN A 651 REMARK 465 ASP A 652 REMARK 465 LYS A 653 REMARK 465 ASN A 654 REMARK 465 ASN A 655 REMARK 465 TYR A 656 REMARK 465 SER A 657 REMARK 465 SER A 658 REMARK 465 ARG A 659 REMARK 465 ASN A 660 REMARK 465 SER A 661 REMARK 465 ASN A 662 REMARK 465 ILE A 663 REMARK 465 TYR A 664 REMARK 465 U B 10 REMARK 465 U B 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 225 NE CZ NH1 NH2 REMARK 470 LYS A 233 CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 314 CD CE NZ REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 LYS A 424 CD CE NZ REMARK 470 LYS A 542 CD CE NZ REMARK 470 ARG A 549 CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 U B 2 C2 O2 N3 C4 O4 C5 C6 REMARK 470 U B 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 9 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 9 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 67.31 -111.34 REMARK 500 SER A 470 60.13 37.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 800 O1B REMARK 620 2 ANP A 800 O1G 93.7 REMARK 620 3 HOH A1001 O 104.4 94.6 REMARK 620 4 HOH A1002 O 89.2 89.4 165.5 REMARK 620 5 HOH A1003 O 177.0 87.6 78.2 88.1 REMARK 620 6 HOH A1004 O 95.4 170.9 82.8 91.0 83.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I5X RELATED DB: PDB REMARK 900 RELATED ID: 3I5Y RELATED DB: PDB REMARK 900 RELATED ID: 3I61 RELATED DB: PDB REMARK 900 RELATED ID: 3I62 RELATED DB: PDB REMARK 900 RELATED ID: 3SQX RELATED DB: PDB DBREF 3SQW A 88 664 UNP P15424 MS116_YEAST 88 664 DBREF 3SQW B 2 11 PDB 3SQW 3SQW 2 11 SEQADV 3SQW GLY A 86 UNP P15424 EXPRESSION TAG SEQADV 3SQW SER A 87 UNP P15424 EXPRESSION TAG SEQRES 1 A 579 GLY SER SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SEQRES 2 A 579 SER LYS GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY SEQRES 3 A 579 VAL LEU ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET SEQRES 4 A 579 GLU PHE PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE SEQRES 5 A 579 LYS PRO ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA SEQRES 6 A 579 ARG ALA LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU SEQRES 7 A 579 ILE PRO ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SEQRES 8 A 579 SER GLN TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR SEQRES 9 A 579 ARG ASP LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS SEQRES 10 A 579 ILE HIS ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS SEQRES 11 A 579 VAL SER LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET SEQRES 12 A 579 ASN LYS MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA SEQRES 13 A 579 THR PRO GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER SEQRES 14 A 579 ASN LYS PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP SEQRES 15 A 579 GLU ALA ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP SEQRES 16 A 579 LEU GLU THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER SEQRES 17 A 579 LYS SER ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA SEQRES 18 A 579 THR LEU ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE SEQRES 19 A 579 MET ASN LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP SEQRES 20 A 579 LYS ASN GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER SEQRES 21 A 579 VAL VAL ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA SEQRES 22 A 579 ALA VAL GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SEQRES 23 A 579 SER ASN TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS SEQRES 24 A 579 PHE THR SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE SEQRES 25 A 579 LYS LYS ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE SEQRES 26 A 579 THR GLN ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS SEQRES 27 A 579 LYS ASP GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY SEQRES 28 A 579 ALA ARG GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU SEQRES 29 A 579 GLN ILE GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS SEQRES 30 A 579 ARG ILE GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SEQRES 31 A 579 SER VAL LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL SEQRES 32 A 579 ARG GLU LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS SEQRES 33 A 579 GLN GLU LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU SEQRES 34 A 579 VAL LEU GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER SEQRES 35 A 579 ASP ILE VAL ILE SER LEU ILE SER SER TYR ARG SER CYS SEQRES 36 A 579 ILE LYS GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO SEQRES 37 A 579 GLU ILE ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO SEQRES 38 A 579 GLN LEU LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS SEQRES 39 A 579 LEU GLY LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE SEQRES 40 A 579 GLU ILE ARG ASP TYR SER SER ARG ASP GLY ASN ASN LYS SEQRES 41 A 579 SER TYR ASP TYR ASP ASP ASP SER GLU ILE SER PHE ARG SEQRES 42 A 579 GLY ASN LYS ASN TYR ASN ASN ARG SER GLN ASN ARG ASP SEQRES 43 A 579 TYR ASP ASP GLU PRO PHE ARG ARG SER ASN ASN ASN ARG SEQRES 44 A 579 ARG SER PHE SER ARG SER ASN ASP LYS ASN ASN TYR SER SEQRES 45 A 579 SER ARG ASN SER ASN ILE TYR SEQRES 1 B 10 U U U U U U U U U U HET ANP A 800 31 HET MG A 900 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *187(H2 O) HELIX 1 1 THR A 103 GLU A 110 1 8 HELIX 2 2 ASP A 114 ARG A 123 1 10 HELIX 3 3 THR A 130 SER A 142 1 13 HELIX 4 4 GLY A 157 THR A 173 1 17 HELIX 5 5 THR A 189 ASN A 207 1 19 HELIX 6 6 TYR A 208 LYS A 211 5 4 HELIX 7 7 ASP A 223 ARG A 235 1 13 HELIX 8 8 THR A 242 PHE A 258 1 17 HELIX 9 9 GLU A 268 LEU A 273 1 6 HELIX 10 10 PHE A 277 ASN A 292 1 16 HELIX 11 11 ASP A 310 ALA A 316 1 7 HELIX 12 12 ALA A 353 ARG A 370 1 18 HELIX 13 13 THR A 382 LYS A 398 1 17 HELIX 14 14 THR A 411 ASP A 425 1 15 HELIX 15 15 ASP A 434 ALA A 437 5 4 HELIX 16 16 ALA A 458 GLY A 465 1 8 HELIX 17 17 GLU A 484 ASN A 496 1 13 HELIX 18 18 SER A 508 VAL A 519 1 12 HELIX 19 19 GLU A 522 ARG A 545 1 24 HELIX 20 20 SER A 547 LEU A 563 1 17 HELIX 21 21 SER A 573 GLY A 581 1 9 HELIX 22 22 SER A 585 MET A 591 1 7 SHEET 1 A 8 LYS A 89 VAL A 93 0 SHEET 2 A 8 GLU A 324 ASP A 329 1 O CYS A 325 N ILE A 91 SHEET 3 A 8 HIS A 146 ARG A 151 1 N ILE A 149 O LEU A 328 SHEET 4 A 8 LYS A 300 SER A 305 1 O LEU A 303 N ALA A 150 SHEET 5 A 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 A 8 ALA A 183 VAL A 186 1 N VAL A 186 O VAL A 265 SHEET 7 A 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 A 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 B 7 ILE A 403 PHE A 406 0 SHEET 2 B 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 B 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 B 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 B 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 B 7 ILE A 342 SER A 349 1 N VAL A 347 O LEU A 478 SHEET 7 B 7 LYS A 501 TYR A 505 1 O GLU A 503 N ILE A 348 SHEET 1 C 2 ILE A 570 VAL A 572 0 SHEET 2 C 2 PHE A 592 ILE A 594 1 O GLU A 593 N VAL A 572 LINK O1B ANP A 800 MG MG A 900 1555 1555 1.98 LINK O1G ANP A 800 MG MG A 900 1555 1555 1.98 LINK MG MG A 900 O HOH A1001 1555 1555 2.05 LINK MG MG A 900 O HOH A1002 1555 1555 2.15 LINK MG MG A 900 O HOH A1003 1555 1555 2.19 LINK MG MG A 900 O HOH A1004 1555 1555 2.21 SITE 1 AC1 27 PHE A 126 GLY A 128 THR A 130 GLN A 133 SITE 2 AC1 27 THR A 154 GLY A 155 THR A 156 GLY A 157 SITE 3 AC1 27 LYS A 158 THR A 159 PHE A 160 GLU A 268 SITE 4 AC1 27 GLY A 439 ASP A 441 ARG A 466 ARG A 469 SITE 5 AC1 27 SER A 470 MG A 900 HOH A1001 HOH A1002 SITE 6 AC1 27 HOH A1003 HOH A1005 HOH A1007 HOH A1008 SITE 7 AC1 27 HOH A1009 HOH A1059 HOH A1117 SITE 1 AC2 5 ANP A 800 HOH A1001 HOH A1002 HOH A1003 SITE 2 AC2 5 HOH A1004 CRYST1 88.159 126.630 56.247 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017779 0.00000