HEADER HYDROLASE/RNA 06-JUL-11 3SQX TITLE STRUCTURE OF MSS116P (NTE AND C-TAIL DOUBLE DELETION) BOUND TO SSRNA TITLE 2 AND AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 88-597; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: MSS116, YD9346.05C, YDR194C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHESIZED KEYWDS RECA FOLD, RNA DEPENDENT ATPASE, RNA HELICASE, DEAD-BOX PROTEIN, KEYWDS 2 MITOCHONDRION, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DEL CAMPO,A.M.LAMBOWITZ REVDAT 3 13-SEP-23 3SQX 1 REMARK SEQADV LINK REVDAT 2 30-NOV-11 3SQX 1 JRNL REVDAT 1 12-OCT-11 3SQX 0 JRNL AUTH G.MOHR,M.DEL CAMPO,K.G.TURNER,B.GILMAN,R.Z.WOLF, JRNL AUTH 2 A.M.LAMBOWITZ JRNL TITL HIGH-THROUGHPUT GENETIC IDENTIFICATION OF FUNCTIONALLY JRNL TITL 2 IMPORTANT REGIONS OF THE YEAST DEAD-BOX PROTEIN MSS116P. JRNL REF J.MOL.BIOL. V. 413 952 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21945532 JRNL DOI 10.1016/J.JMB.2011.09.015 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 32796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1718 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3985 REMARK 3 NUCLEIC ACID ATOMS : 125 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4224 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5737 ; 1.253 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ; 5.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;37.245 ;24.855 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 765 ;14.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3032 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 791 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2541 ; 0.468 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1017 ; 0.103 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4128 ; 0.868 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 1.426 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 2.311 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 71.4520 45.9790 22.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.8368 T22: 0.3127 REMARK 3 T33: 0.8916 T12: -0.0649 REMARK 3 T13: 0.3364 T23: -0.4372 REMARK 3 L TENSOR REMARK 3 L11: 15.6651 L22: 7.8403 REMARK 3 L33: 10.9162 L12: -1.4917 REMARK 3 L13: -0.1906 L23: -5.3340 REMARK 3 S TENSOR REMARK 3 S11: 0.7125 S12: -1.8798 S13: 2.2628 REMARK 3 S21: 1.7089 S22: -0.0697 S23: 0.9594 REMARK 3 S31: -1.4537 S32: -0.3287 S33: -0.6428 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 479 REMARK 3 ORIGIN FOR THE GROUP (A): 74.0510 28.2550 10.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.0736 REMARK 3 T33: 0.3927 T12: 0.0037 REMARK 3 T13: 0.0303 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.7204 L22: 2.2302 REMARK 3 L33: 0.5350 L12: 1.1559 REMARK 3 L13: 0.0268 L23: -0.5905 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: -0.2490 S13: 0.1761 REMARK 3 S21: 0.2974 S22: -0.0718 S23: 0.0627 REMARK 3 S31: -0.0933 S32: 0.0338 S33: -0.0357 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 480 A 567 REMARK 3 ORIGIN FOR THE GROUP (A): 70.3960 0.4060 14.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.0676 REMARK 3 T33: 0.6612 T12: 0.0172 REMARK 3 T13: -0.0333 T23: 0.1803 REMARK 3 L TENSOR REMARK 3 L11: 3.1021 L22: 3.8117 REMARK 3 L33: 1.7260 L12: 0.9607 REMARK 3 L13: 0.1218 L23: 0.5436 REMARK 3 S TENSOR REMARK 3 S11: 0.1122 S12: -0.3869 S13: -0.7546 REMARK 3 S21: 0.3119 S22: -0.0507 S23: -0.1572 REMARK 3 S31: 0.2332 S32: 0.0222 S33: -0.0615 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 568 A 595 REMARK 3 ORIGIN FOR THE GROUP (A): 83.1440 -9.7510 5.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.2980 T22: 1.5087 REMARK 3 T33: 1.8612 T12: 0.2550 REMARK 3 T13: 0.2340 T23: -0.1607 REMARK 3 L TENSOR REMARK 3 L11: 8.9280 L22: 15.4617 REMARK 3 L33: 12.7635 L12: -8.8192 REMARK 3 L13: 7.0956 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.5399 S12: 1.7994 S13: 0.0469 REMARK 3 S21: -0.2803 S22: 0.8641 S23: -1.3543 REMARK 3 S31: 0.7596 S32: 4.1651 S33: -1.4040 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): 79.7300 12.6250 5.7880 REMARK 3 T TENSOR REMARK 3 T11: 0.3198 T22: 0.2369 REMARK 3 T33: 0.7817 T12: 0.1188 REMARK 3 T13: 0.1155 T23: 0.0846 REMARK 3 L TENSOR REMARK 3 L11: 6.7573 L22: 41.2535 REMARK 3 L33: 4.2746 L12: 14.2671 REMARK 3 L13: 2.9219 L23: 0.4126 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: 0.3957 S13: -0.7836 REMARK 3 S21: -0.4600 S22: -0.2023 S23: -2.2764 REMARK 3 S31: 0.3396 S32: 0.7042 S33: 0.1110 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): 83.9670 22.4170 -3.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.2399 REMARK 3 T33: 0.5148 T12: 0.0767 REMARK 3 T13: 0.0792 T23: -0.1149 REMARK 3 L TENSOR REMARK 3 L11: 13.1898 L22: 8.3752 REMARK 3 L33: 16.3359 L12: 9.8064 REMARK 3 L13: -2.2182 L23: -4.9746 REMARK 3 S TENSOR REMARK 3 S11: -0.4694 S12: 1.0334 S13: -1.1105 REMARK 3 S21: -0.6088 S22: 0.3554 S23: -0.6878 REMARK 3 S31: 0.6201 S32: 1.0557 S33: 0.1140 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 800 A 800 REMARK 3 ORIGIN FOR THE GROUP (A): 66.4920 33.9960 16.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.1489 REMARK 3 T33: 0.3055 T12: -0.0240 REMARK 3 T13: 0.1383 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 1.5251 L22: 8.9785 REMARK 3 L33: 5.6009 L12: -0.6026 REMARK 3 L13: 1.2314 L23: 5.8575 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.2976 S13: -0.0605 REMARK 3 S21: 0.1521 S22: -0.3779 S23: 0.5366 REMARK 3 S31: 0.1739 S32: -0.5884 S33: 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.68800 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: PDB ENTRY 3I5X CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM TARTRATE DIBASIC, PH REMARK 280 7.0, 10% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.47150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.52150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.47150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.52150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 ASP A 596 REMARK 465 TYR A 597 REMARK 465 U B 10 REMARK 465 U B 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 SER A 99 OG REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CD CE NZ REMARK 470 LYS A 311 NZ REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ARG A 341 CD NE CZ NH1 NH2 REMARK 470 LYS A 424 CE NZ REMARK 470 ARG A 574 CD NE CZ NH1 NH2 REMARK 470 ARG A 575 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 589 CD CE NZ REMARK 470 ARG A 595 NE CZ NH1 NH2 REMARK 470 U B 2 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U B 2 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 2 C5 C6 REMARK 470 U B 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 9 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 9 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 -78.45 -73.59 REMARK 500 ASN A 98 55.23 -108.93 REMARK 500 SER A 295 167.42 177.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 800 O1G REMARK 620 2 ANP A 800 O1B 90.3 REMARK 620 3 HOH A1001 O 90.6 175.0 REMARK 620 4 HOH A1002 O 91.8 99.8 85.1 REMARK 620 5 HOH A1003 O 87.6 82.9 92.2 177.2 REMARK 620 6 HOH A1004 O 176.2 93.5 85.7 87.0 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I5X RELATED DB: PDB REMARK 900 RELATED ID: 3I5Y RELATED DB: PDB REMARK 900 RELATED ID: 3I61 RELATED DB: PDB REMARK 900 RELATED ID: 3I62 RELATED DB: PDB REMARK 900 RELATED ID: 3SQW RELATED DB: PDB DBREF 3SQX A 88 597 UNP P15424 MS116_YEAST 88 597 DBREF 3SQX B 2 11 PDB 3SQX 3SQX 2 11 SEQADV 3SQX GLY A 86 UNP P15424 EXPRESSION TAG SEQADV 3SQX SER A 87 UNP P15424 EXPRESSION TAG SEQRES 1 A 512 GLY SER SER LYS LEU ILE HIS VAL PRO LYS GLU ASP ASN SEQRES 2 A 512 SER LYS GLU VAL THR LEU ASP SER LEU LEU GLU GLU GLY SEQRES 3 A 512 VAL LEU ASP LYS GLU ILE HIS LYS ALA ILE THR ARG MET SEQRES 4 A 512 GLU PHE PRO GLY LEU THR PRO VAL GLN GLN LYS THR ILE SEQRES 5 A 512 LYS PRO ILE LEU SER SER GLU ASP HIS ASP VAL ILE ALA SEQRES 6 A 512 ARG ALA LYS THR GLY THR GLY LYS THR PHE ALA PHE LEU SEQRES 7 A 512 ILE PRO ILE PHE GLN HIS LEU ILE ASN THR LYS PHE ASP SEQRES 8 A 512 SER GLN TYR MET VAL LYS ALA VAL ILE VAL ALA PRO THR SEQRES 9 A 512 ARG ASP LEU ALA LEU GLN ILE GLU ALA GLU VAL LYS LYS SEQRES 10 A 512 ILE HIS ASP MET ASN TYR GLY LEU LYS LYS TYR ALA CYS SEQRES 11 A 512 VAL SER LEU VAL GLY GLY THR ASP PHE ARG ALA ALA MET SEQRES 12 A 512 ASN LYS MET ASN LYS LEU ARG PRO ASN ILE VAL ILE ALA SEQRES 13 A 512 THR PRO GLY ARG LEU ILE ASP VAL LEU GLU LYS TYR SER SEQRES 14 A 512 ASN LYS PHE PHE ARG PHE VAL ASP TYR LYS VAL LEU ASP SEQRES 15 A 512 GLU ALA ASP ARG LEU LEU GLU ILE GLY PHE ARG ASP ASP SEQRES 16 A 512 LEU GLU THR ILE SER GLY ILE LEU ASN GLU LYS ASN SER SEQRES 17 A 512 LYS SER ALA ASP ASN ILE LYS THR LEU LEU PHE SER ALA SEQRES 18 A 512 THR LEU ASP ASP LYS VAL GLN LYS LEU ALA ASN ASN ILE SEQRES 19 A 512 MET ASN LYS LYS GLU CYS LEU PHE LEU ASP THR VAL ASP SEQRES 20 A 512 LYS ASN GLU PRO GLU ALA HIS GLU ARG ILE ASP GLN SER SEQRES 21 A 512 VAL VAL ILE SER GLU LYS PHE ALA ASN SER ILE PHE ALA SEQRES 22 A 512 ALA VAL GLU HIS ILE LYS LYS GLN ILE LYS GLU ARG ASP SEQRES 23 A 512 SER ASN TYR LYS ALA ILE ILE PHE ALA PRO THR VAL LYS SEQRES 24 A 512 PHE THR SER PHE LEU CYS SER ILE LEU LYS ASN GLU PHE SEQRES 25 A 512 LYS LYS ASP LEU PRO ILE LEU GLU PHE HIS GLY LYS ILE SEQRES 26 A 512 THR GLN ASN LYS ARG THR SER LEU VAL LYS ARG PHE LYS SEQRES 27 A 512 LYS ASP GLU SER GLY ILE LEU VAL CYS THR ASP VAL GLY SEQRES 28 A 512 ALA ARG GLY MET ASP PHE PRO ASN VAL HIS GLU VAL LEU SEQRES 29 A 512 GLN ILE GLY VAL PRO SER GLU LEU ALA ASN TYR ILE HIS SEQRES 30 A 512 ARG ILE GLY ARG THR ALA ARG SER GLY LYS GLU GLY SER SEQRES 31 A 512 SER VAL LEU PHE ILE CYS LYS ASP GLU LEU PRO PHE VAL SEQRES 32 A 512 ARG GLU LEU GLU ASP ALA LYS ASN ILE VAL ILE ALA LYS SEQRES 33 A 512 GLN GLU LYS TYR GLU PRO SER GLU GLU ILE LYS SER GLU SEQRES 34 A 512 VAL LEU GLU ALA VAL THR GLU GLU PRO GLU ASP ILE SER SEQRES 35 A 512 ASP ILE VAL ILE SER LEU ILE SER SER TYR ARG SER CYS SEQRES 36 A 512 ILE LYS GLU TYR ARG PHE SER GLU ARG ARG ILE LEU PRO SEQRES 37 A 512 GLU ILE ALA SER THR TYR GLY VAL LEU LEU ASN ASP PRO SEQRES 38 A 512 GLN LEU LYS ILE PRO VAL SER ARG ARG PHE LEU ASP LYS SEQRES 39 A 512 LEU GLY LEU SER ARG SER PRO ILE GLY LYS ALA MET PHE SEQRES 40 A 512 GLU ILE ARG ASP TYR SEQRES 1 B 10 U U U U U U U U U U HET ANP A 800 31 HET MG A 900 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *103(H2 O) HELIX 1 1 THR A 103 GLU A 110 1 8 HELIX 2 2 ASP A 114 ARG A 123 1 10 HELIX 3 3 THR A 130 SER A 142 1 13 HELIX 4 4 GLY A 157 THR A 173 1 17 HELIX 5 5 THR A 189 ASN A 207 1 19 HELIX 6 6 TYR A 208 LYS A 211 5 4 HELIX 7 7 ASP A 223 ARG A 235 1 13 HELIX 8 8 THR A 242 PHE A 258 1 17 HELIX 9 9 GLU A 268 LEU A 273 1 6 HELIX 10 10 PHE A 277 ASN A 292 1 16 HELIX 11 11 ASP A 310 ALA A 316 1 7 HELIX 12 12 ASN A 317 MET A 320 5 4 HELIX 13 13 ALA A 353 ARG A 370 1 18 HELIX 14 14 THR A 382 LYS A 398 1 17 HELIX 15 15 THR A 411 ASP A 425 1 15 HELIX 16 16 ASP A 434 ALA A 437 5 4 HELIX 17 17 ALA A 458 GLY A 465 1 8 HELIX 18 18 GLU A 484 ASN A 496 1 13 HELIX 19 19 SER A 508 VAL A 519 1 12 HELIX 20 20 GLU A 522 ILE A 541 1 20 HELIX 21 21 SER A 547 SER A 557 1 11 HELIX 22 22 SER A 557 LEU A 563 1 7 HELIX 23 23 SER A 573 GLY A 581 1 9 HELIX 24 24 SER A 585 MET A 591 1 7 SHEET 1 A 8 LYS A 89 VAL A 93 0 SHEET 2 A 8 GLU A 324 ASP A 329 1 O PHE A 327 N ILE A 91 SHEET 3 A 8 HIS A 146 ARG A 151 1 N ILE A 149 O LEU A 328 SHEET 4 A 8 LYS A 300 SER A 305 1 O LEU A 303 N ALA A 150 SHEET 5 A 8 TYR A 263 ASP A 267 1 N LEU A 266 O LEU A 302 SHEET 6 A 8 ALA A 183 VAL A 186 1 N VAL A 186 O VAL A 265 SHEET 7 A 8 ILE A 238 ALA A 241 1 O VAL A 239 N ILE A 185 SHEET 8 A 8 CYS A 215 LEU A 218 1 N LEU A 218 O ILE A 240 SHEET 1 B 7 ILE A 403 PHE A 406 0 SHEET 2 B 7 GLY A 428 CYS A 432 1 O VAL A 431 N LEU A 404 SHEET 3 B 7 LYS A 375 PHE A 379 1 N ILE A 378 O LEU A 430 SHEET 4 B 7 GLU A 447 ILE A 451 1 O LEU A 449 N ILE A 377 SHEET 5 B 7 GLY A 474 CYS A 481 1 O PHE A 479 N GLN A 450 SHEET 6 B 7 ILE A 342 SER A 349 1 N SER A 349 O ILE A 480 SHEET 7 B 7 LYS A 501 LYS A 504 1 O GLU A 503 N ILE A 348 SHEET 1 C 2 ILE A 570 PRO A 571 0 SHEET 2 C 2 PHE A 592 GLU A 593 1 O GLU A 593 N ILE A 570 LINK O1G ANP A 800 MG MG A 900 1555 1555 2.00 LINK O1B ANP A 800 MG MG A 900 1555 1555 2.05 LINK MG MG A 900 O HOH A1001 1555 1555 2.17 LINK MG MG A 900 O HOH A1002 1555 1555 1.93 LINK MG MG A 900 O HOH A1003 1555 1555 2.00 LINK MG MG A 900 O HOH A1004 1555 1555 2.14 SITE 1 AC1 27 PHE A 126 GLY A 128 THR A 130 GLN A 133 SITE 2 AC1 27 THR A 154 GLY A 155 THR A 156 GLY A 157 SITE 3 AC1 27 LYS A 158 THR A 159 GLU A 268 GLY A 439 SITE 4 AC1 27 ASP A 441 ARG A 466 ARG A 469 SER A 470 SITE 5 AC1 27 MG A 900 HOH A1001 HOH A1002 HOH A1003 SITE 6 AC1 27 HOH A1004 HOH A1005 HOH A1006 HOH A1050 SITE 7 AC1 27 HOH A1064 HOH A1079 HOH A1084 SITE 1 AC2 6 ASP A 267 ANP A 800 HOH A1001 HOH A1002 SITE 2 AC2 6 HOH A1003 HOH A1004 CRYST1 88.943 127.043 55.883 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017895 0.00000