HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 07-JUL-11 3SRQ TITLE S. AUREUS DIHYDROFOLATE REDUCTASE COMPLEXED WITH NOVEL 7-ARYL-2,4- TITLE 2 DIAMINOQUINAZOLINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: FOLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS DIHYDROFOLATE REDUCTASE, DHFR, DRUG DESIGN, ENZYME INHIBITORS, KEYWDS 2 FOLATE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HILGERS REVDAT 3 28-FEB-24 3SRQ 1 REMARK SEQADV REVDAT 2 19-OCT-11 3SRQ 1 JRNL REVDAT 1 31-AUG-11 3SRQ 0 JRNL AUTH X.LI,M.HILGERS,M.CUNNINGHAM,Z.CHEN,M.TRZOSS,J.ZHANG, JRNL AUTH 2 L.KOHNEN,T.LAM,C.CREIGHTON,K.G C,K.NELSON,B.KWAN,M.STIDHAM, JRNL AUTH 3 V.BROWN-DRIVER,K.J.SHAW,J.FINN JRNL TITL STRUCTURE-BASED DESIGN OF NEW DHFR-BASED ANTIBACTERIAL JRNL TITL 2 AGENTS: 7-ARYL-2,4-DIAMINOQUINAZOLINES. JRNL REF BIOORG.MED.CHEM.LETT. V. 21 5171 2011 JRNL REFN ISSN 0960-894X JRNL PMID 21831637 JRNL DOI 10.1016/J.BMCL.2011.07.059 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 22026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1133 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.4840 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.5440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1382 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1887 ; 1.552 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 156 ; 6.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;34.958 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 226 ;12.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1035 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 782 ; 0.712 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1282 ; 1.347 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 600 ; 2.028 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 605 ; 3.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 2 X 20 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3670 -24.5170 8.6520 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.0878 REMARK 3 T33: 0.0898 T12: 0.0087 REMARK 3 T13: -0.0399 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8021 L22: 0.4941 REMARK 3 L33: 1.1660 L12: -0.5736 REMARK 3 L13: 0.2391 L23: -0.0578 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: 0.0041 S13: 0.0393 REMARK 3 S21: -0.0405 S22: -0.0243 S23: 0.0185 REMARK 3 S31: 0.1046 S32: -0.0536 S33: -0.0396 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 21 X 57 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8170 -33.7240 3.1380 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.0739 REMARK 3 T33: 0.1347 T12: -0.0005 REMARK 3 T13: -0.1049 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.4273 L22: 1.8013 REMARK 3 L33: 0.6523 L12: -0.7783 REMARK 3 L13: -0.0434 L23: -0.4197 REMARK 3 S TENSOR REMARK 3 S11: 0.1979 S12: 0.0111 S13: -0.1826 REMARK 3 S21: -0.1726 S22: -0.0874 S23: 0.2719 REMARK 3 S31: 0.2915 S32: -0.0277 S33: -0.1105 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 58 X 85 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4840 -37.5760 -4.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.2802 T22: 0.0878 REMARK 3 T33: 0.0606 T12: 0.1349 REMARK 3 T13: -0.0310 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.2492 L22: 3.5959 REMARK 3 L33: 0.0807 L12: -2.2814 REMARK 3 L13: 0.0124 L23: -0.3340 REMARK 3 S TENSOR REMARK 3 S11: 0.4898 S12: 0.2133 S13: -0.1464 REMARK 3 S21: -0.7969 S22: -0.5000 S23: -0.1000 REMARK 3 S31: 0.1767 S32: 0.0620 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 86 X 123 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2120 -23.9070 3.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.1279 T22: 0.0853 REMARK 3 T33: 0.0874 T12: 0.0241 REMARK 3 T13: -0.0285 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8062 L22: 0.7235 REMARK 3 L33: 0.8902 L12: -0.6331 REMARK 3 L13: 0.3288 L23: -0.2199 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: 0.0406 S13: 0.0661 REMARK 3 S21: -0.1050 S22: -0.0785 S23: -0.0646 REMARK 3 S31: 0.1660 S32: 0.0130 S33: -0.0409 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 124 X 130 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8300 -13.1680 4.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.0851 REMARK 3 T33: 0.1199 T12: 0.0041 REMARK 3 T13: -0.0424 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.7972 L22: 5.9456 REMARK 3 L33: 3.3354 L12: -2.6100 REMARK 3 L13: 3.0545 L23: -2.8556 REMARK 3 S TENSOR REMARK 3 S11: -0.2818 S12: 0.0093 S13: 0.2459 REMARK 3 S21: 0.0628 S22: 0.0312 S23: -0.2129 REMARK 3 S31: -0.3044 S32: -0.0409 S33: 0.2506 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 131 X 158 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8390 -18.5800 3.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.1020 REMARK 3 T33: 0.0778 T12: -0.0031 REMARK 3 T13: -0.0296 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.4678 L22: 1.2197 REMARK 3 L33: 3.0410 L12: -0.1077 REMARK 3 L13: -1.1015 L23: -1.4091 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.0109 S13: -0.0386 REMARK 3 S21: -0.0298 S22: 0.0285 S23: 0.0179 REMARK 3 S31: 0.0314 S32: -0.1454 S33: -0.0320 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 169 X 169 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8622 -31.9338 5.7978 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.0663 REMARK 3 T33: 0.1021 T12: -0.0109 REMARK 3 T13: -0.0520 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 4.4969 L22: 6.8933 REMARK 3 L33: 5.2809 L12: 5.5674 REMARK 3 L13: 4.8500 L23: 5.9993 REMARK 3 S TENSOR REMARK 3 S11: 0.4778 S12: 0.1563 S13: -0.1871 REMARK 3 S21: 0.0160 S22: -0.2982 S23: -0.0278 REMARK 3 S31: 0.5968 S32: -0.0702 S33: -0.1796 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 168 X 168 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8250 -31.4990 6.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.0789 REMARK 3 T33: 0.1314 T12: 0.0495 REMARK 3 T13: -0.0474 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.2728 L22: 2.7700 REMARK 3 L33: 0.8183 L12: -0.8155 REMARK 3 L13: 0.3091 L23: -0.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: -0.1540 S13: -0.0620 REMARK 3 S21: -0.0697 S22: -0.1318 S23: -0.1383 REMARK 3 S31: 0.1147 S32: 0.0879 S33: 0.0435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3SRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 3.2.17 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 15.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MG ACETATE, MPD, ADA BUFFER, REMARK 280 PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.73000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.46000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.59500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.32500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.86500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.73000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.46000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 89.32500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.59500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 LYS X 159 REMARK 465 LEU X 160 REMARK 465 GLU X 161 REMARK 465 HIS X 162 REMARK 465 HIS X 163 REMARK 465 HIS X 164 REMARK 465 HIS X 165 REMARK 465 HIS X 166 REMARK 465 HIS X 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 58 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 39 -151.81 -123.09 REMARK 500 ASN X 70 88.74 -154.63 REMARK 500 ASP X 143 -160.04 -164.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP X 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Q19 X 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SQY RELATED DB: PDB REMARK 900 RELATED ID: 3SR5 RELATED DB: PDB REMARK 900 RELATED ID: 3SRR RELATED DB: PDB REMARK 900 RELATED ID: 3SRS RELATED DB: PDB REMARK 900 RELATED ID: 3SRU RELATED DB: PDB REMARK 900 RELATED ID: 3SRW RELATED DB: PDB DBREF 3SRQ X 1 159 UNP P0A017 DYR_STAAU 1 159 SEQADV 3SRQ LEU X 160 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ GLU X 161 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ HIS X 162 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ HIS X 163 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ HIS X 164 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ HIS X 165 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ HIS X 166 UNP P0A017 EXPRESSION TAG SEQADV 3SRQ HIS X 167 UNP P0A017 EXPRESSION TAG SEQRES 1 X 167 MET THR LEU SER ILE LEU VAL ALA HIS ASP LEU GLN ARG SEQRES 2 X 167 VAL ILE GLY PHE GLU ASN GLN LEU PRO TRP HIS LEU PRO SEQRES 3 X 167 ASN ASP LEU LYS HIS VAL LYS LYS LEU SER THR GLY HIS SEQRES 4 X 167 THR LEU VAL MET GLY ARG LYS THR PHE GLU SER ILE GLY SEQRES 5 X 167 LYS PRO LEU PRO ASN ARG ARG ASN VAL VAL LEU THR SER SEQRES 6 X 167 ASP THR SER PHE ASN VAL GLU GLY VAL ASP VAL ILE HIS SEQRES 7 X 167 SER ILE GLU ASP ILE TYR GLN LEU PRO GLY HIS VAL PHE SEQRES 8 X 167 ILE PHE GLY GLY GLN THR LEU PHE GLU GLU MET ILE ASP SEQRES 9 X 167 LYS VAL ASP ASP MET TYR ILE THR VAL ILE GLU GLY LYS SEQRES 10 X 167 PHE ARG GLY ASP THR PHE PHE PRO PRO TYR THR PHE GLU SEQRES 11 X 167 ASP TRP GLU VAL ALA SER SER VAL GLU GLY LYS LEU ASP SEQRES 12 X 167 GLU LYS ASN THR ILE PRO HIS THR PHE LEU HIS LEU ILE SEQRES 13 X 167 ARG LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HET NAP X 168 48 HET Q19 X 169 22 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM Q19 1-[3-(2,4-DIAMINO-6-METHYLQUINAZOLIN-7-YL) HETNAM 2 Q19 PHENYL]ETHANONE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 Q19 C17 H16 N4 O FORMUL 4 HOH *179(H2 O) HELIX 1 1 LEU X 25 THR X 37 1 13 HELIX 2 2 ARG X 45 GLY X 52 1 8 HELIX 3 3 SER X 79 LEU X 86 5 8 HELIX 4 4 GLY X 95 ILE X 103 1 9 SHEET 1 A 8 ASP X 75 ILE X 77 0 SHEET 2 A 8 ARG X 59 LEU X 63 1 N VAL X 62 O ASP X 75 SHEET 3 A 8 THR X 40 GLY X 44 1 N MET X 43 O LEU X 63 SHEET 4 A 8 VAL X 90 GLY X 94 1 O PHE X 91 N THR X 40 SHEET 5 A 8 LEU X 3 ASP X 10 1 N SER X 4 O ILE X 92 SHEET 6 A 8 ASP X 108 ILE X 114 1 O TYR X 110 N ILE X 5 SHEET 7 A 8 HIS X 150 ARG X 157 -1 O LEU X 153 N ILE X 111 SHEET 8 A 8 TRP X 132 GLU X 139 -1 N VAL X 138 O PHE X 152 SHEET 1 B 2 VAL X 14 GLY X 16 0 SHEET 2 B 2 THR X 122 PHE X 123 -1 O THR X 122 N ILE X 15 CISPEP 1 GLY X 94 GLY X 95 0 5.41 SITE 1 AC1 33 VAL X 7 ALA X 8 ILE X 15 GLY X 16 SITE 2 AC1 33 ASN X 19 GLN X 20 LEU X 21 GLY X 44 SITE 3 AC1 33 ARG X 45 LYS X 46 THR X 47 LEU X 63 SITE 4 AC1 33 THR X 64 SER X 65 ILE X 80 PHE X 93 SITE 5 AC1 33 GLY X 94 GLY X 95 GLN X 96 THR X 97 SITE 6 AC1 33 LEU X 98 GLU X 101 THR X 122 Q19 X 169 SITE 7 AC1 33 HOH X 183 HOH X 199 HOH X 201 HOH X 216 SITE 8 AC1 33 HOH X 220 HOH X 234 HOH X 263 HOH X 270 SITE 9 AC1 33 HOH X 276 SITE 1 AC2 9 LEU X 6 VAL X 7 ALA X 8 LEU X 21 SITE 2 AC2 9 ASP X 28 VAL X 32 LEU X 55 PHE X 93 SITE 3 AC2 9 NAP X 168 CRYST1 79.143 79.143 107.190 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012635 0.007295 0.000000 0.00000 SCALE2 0.000000 0.014590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009329 0.00000