HEADER TRANSFERASE 07-JUL-11 3SS1 TITLE CLOSTRIDIUM DIFFICILE TOXIN A (TCDA) GLUCOLSYLTRANSFERASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLUCOSYLTRANSFERASE DOMAIN (UNP RESIDUES 1-542); COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD0663, CD630_06630, TCDA; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS MEGATERIUM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1404; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: WH320; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PC-HIS1622 KEYWDS GLUCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.N.PRUITT,N.M.CHUMBLER,M.A.FARROW,S.A.SEEBACK,D.B.FRIEDMAN, AUTHOR 2 B.W.SPILLER,D.B.LACY REVDAT 4 13-SEP-23 3SS1 1 REMARK SEQADV LINK REVDAT 3 28-MAR-12 3SS1 1 JRNL REVDAT 2 08-FEB-12 3SS1 1 JRNL REVDAT 1 01-FEB-12 3SS1 0 JRNL AUTH R.N.PRUITT,N.M.CHUMBLER,S.A.RUTHERFORD,M.A.FARROW, JRNL AUTH 2 D.B.FRIEDMAN,B.SPILLER,D.B.LACY JRNL TITL STRUCTURAL DETERMINANTS OF CLOSTRIDIUM DIFFICILE TOXIN A JRNL TITL 2 GLUCOSYLTRANSFERASE ACTIVITY. JRNL REF J.BIOL.CHEM. V. 287 8013 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22267739 JRNL DOI 10.1074/JBC.M111.298414 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 37260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3160 - 5.3042 1.00 2694 148 0.1664 0.2049 REMARK 3 2 5.3042 - 4.2109 1.00 2628 147 0.1427 0.1933 REMARK 3 3 4.2109 - 3.6788 1.00 2618 147 0.1608 0.1664 REMARK 3 4 3.6788 - 3.3426 1.00 2599 141 0.1928 0.2378 REMARK 3 5 3.3426 - 3.1030 0.99 2600 145 0.2004 0.2425 REMARK 3 6 3.1030 - 2.9201 0.99 2577 145 0.2076 0.2650 REMARK 3 7 2.9201 - 2.7739 0.98 2550 140 0.1989 0.2488 REMARK 3 8 2.7739 - 2.6531 0.98 2512 137 0.2014 0.2440 REMARK 3 9 2.6531 - 2.5510 0.97 2549 139 0.2022 0.2681 REMARK 3 10 2.5510 - 2.4630 0.95 2478 135 0.1987 0.2626 REMARK 3 11 2.4630 - 2.3860 0.95 2449 132 0.2006 0.2845 REMARK 3 12 2.3860 - 2.3178 0.93 2416 134 0.2098 0.3064 REMARK 3 13 2.3178 - 2.2568 0.91 2333 127 0.2218 0.3047 REMARK 3 14 2.2568 - 2.2017 0.89 2314 126 0.2257 0.2863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 34.65 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.35580 REMARK 3 B22 (A**2) : 5.35580 REMARK 3 B33 (A**2) : -2.72480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4483 REMARK 3 ANGLE : 1.004 6053 REMARK 3 CHIRALITY : 0.072 678 REMARK 3 PLANARITY : 0.004 774 REMARK 3 DIHEDRAL : 15.314 1698 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:89) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1653 88.1073 -15.6327 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.3785 REMARK 3 T33: 0.2800 T12: -0.1836 REMARK 3 T13: 0.0468 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.9236 L22: 1.9787 REMARK 3 L33: 1.4078 L12: 0.4481 REMARK 3 L13: -0.1643 L23: -0.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.1798 S12: -0.2411 S13: 0.0124 REMARK 3 S21: 0.2850 S22: -0.1588 S23: -0.2207 REMARK 3 S31: -0.4194 S32: 0.2689 S33: -0.0294 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 90:291) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3447 47.3579 7.8342 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.2852 REMARK 3 T33: 0.2469 T12: 0.0936 REMARK 3 T13: 0.0271 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 0.9848 L22: 0.7279 REMARK 3 L33: 1.3082 L12: 0.2863 REMARK 3 L13: -0.3617 L23: -0.3941 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: -0.1109 S13: -0.1418 REMARK 3 S21: -0.0392 S22: -0.0892 S23: -0.0962 REMARK 3 S31: 0.4304 S32: 0.4104 S33: 0.0691 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 292:371) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5816 38.8297 -19.4472 REMARK 3 T TENSOR REMARK 3 T11: 0.7614 T22: 0.6732 REMARK 3 T33: 0.5410 T12: 0.2430 REMARK 3 T13: 0.2449 T23: -0.0929 REMARK 3 L TENSOR REMARK 3 L11: 0.7598 L22: 1.4638 REMARK 3 L33: 0.2344 L12: 0.0162 REMARK 3 L13: 0.0829 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.1377 S12: 0.3367 S13: -0.4125 REMARK 3 S21: -0.7961 S22: -0.0978 S23: -0.2884 REMARK 3 S31: 0.4642 S32: 0.4841 S33: 0.1022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 372:514) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4157 62.6965 -4.2382 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.2764 REMARK 3 T33: 0.1778 T12: -0.0323 REMARK 3 T13: -0.0109 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.9617 L22: 0.5068 REMARK 3 L33: 1.1945 L12: -0.0541 REMARK 3 L13: -0.2686 L23: -0.3984 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0576 S13: 0.0791 REMARK 3 S21: 0.0119 S22: -0.0297 S23: -0.0756 REMARK 3 S31: 0.0119 S32: 0.2367 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 515:538) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7098 39.3075 -6.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.5543 T22: 0.4168 REMARK 3 T33: 0.4039 T12: -0.1261 REMARK 3 T13: 0.0675 T23: -0.1275 REMARK 3 L TENSOR REMARK 3 L11: 5.2559 L22: 0.6153 REMARK 3 L33: 2.9514 L12: -0.8929 REMARK 3 L13: -2.3566 L23: 1.0023 REMARK 3 S TENSOR REMARK 3 S11: -0.4212 S12: 0.1069 S13: -0.0660 REMARK 3 S21: -0.0228 S22: 0.1576 S23: -0.0949 REMARK 3 S31: 0.7632 S32: 0.3719 S33: 0.2567 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0094 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2BVM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.2 M L-PROLINE, 0.1 M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.96400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.98200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.97300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.99100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.95500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 539 REMARK 465 GLY A 540 REMARK 465 SER A 541 REMARK 465 LEU A 542 REMARK 465 HIS A 543 REMARK 465 ALA A 544 REMARK 465 GLY A 545 REMARK 465 LEU A 546 REMARK 465 ARG A 547 REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 18 O HOH A 720 1.92 REMARK 500 O LYS A 195 O HOH A 756 2.13 REMARK 500 O ILE A 292 O HOH A 751 2.13 REMARK 500 OD2 ASP A 77 O HOH A 746 2.17 REMARK 500 OG1 THR A 487 O HOH A 729 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 777 O HOH A 781 4564 1.93 REMARK 500 NH2 ARG A 69 OE1 GLU A 157 4564 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 150.72 -49.17 REMARK 500 TYR A 62 75.14 -111.38 REMARK 500 SER A 88 -87.95 -82.94 REMARK 500 ASN A 242 -166.83 -116.10 REMARK 500 GLU A 332 -73.56 -41.69 REMARK 500 LEU A 337 -46.71 -131.74 REMARK 500 GLU A 363 -139.30 51.25 REMARK 500 ASN A 383 33.99 -91.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1542 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 514 OE2 REMARK 620 2 HOH A 637 O 68.4 REMARK 620 3 HOH A 745 O 94.6 87.2 REMARK 620 4 HOH A 750 O 150.7 83.2 91.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1542 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SRZ RELATED DB: PDB REMARK 900 APO FORM DBREF 3SS1 A 1 542 UNP Q189K5 Q189K5_CLOD6 1 542 SEQADV 3SS1 HIS A 543 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 ALA A 544 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 GLY A 545 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 LEU A 546 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 ARG A 547 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 GLY A 548 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 SER A 549 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 HIS A 550 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 HIS A 551 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 HIS A 552 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 HIS A 553 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 HIS A 554 UNP Q189K5 EXPRESSION TAG SEQADV 3SS1 HIS A 555 UNP Q189K5 EXPRESSION TAG SEQRES 1 A 555 MET SER LEU ILE SER LYS GLU GLU LEU ILE LYS LEU ALA SEQRES 2 A 555 TYR SER ILE ARG PRO ARG GLU ASN GLU TYR LYS THR ILE SEQRES 3 A 555 LEU THR ASN LEU ASP GLU TYR ASN LYS LEU THR THR ASN SEQRES 4 A 555 ASN ASN GLU ASN LYS TYR LEU GLN LEU LYS LYS LEU ASN SEQRES 5 A 555 GLU SER ILE ASP VAL PHE MET ASN LYS TYR LYS THR SER SEQRES 6 A 555 SER ARG ASN ARG ALA LEU SER ASN LEU LYS LYS ASP ILE SEQRES 7 A 555 LEU LYS GLU VAL ILE LEU ILE LYS ASN SER ASN THR SER SEQRES 8 A 555 PRO VAL GLU LYS ASN LEU HIS PHE VAL TRP ILE GLY GLY SEQRES 9 A 555 GLU VAL SER ASP ILE ALA LEU GLU TYR ILE LYS GLN TRP SEQRES 10 A 555 ALA ASP ILE ASN ALA GLU TYR ASN ILE LYS LEU TRP TYR SEQRES 11 A 555 ASP SER GLU ALA PHE LEU VAL ASN THR LEU LYS LYS ALA SEQRES 12 A 555 ILE VAL GLU SER SER THR THR GLU ALA LEU GLN LEU LEU SEQRES 13 A 555 GLU GLU GLU ILE GLN ASN PRO GLN PHE ASP ASN MET LYS SEQRES 14 A 555 PHE TYR LYS LYS ARG MET GLU PHE ILE TYR ASP ARG GLN SEQRES 15 A 555 LYS ARG PHE ILE ASN TYR TYR LYS SER GLN ILE ASN LYS SEQRES 16 A 555 PRO THR VAL PRO THR ILE ASP ASP ILE ILE LYS SER HIS SEQRES 17 A 555 LEU VAL SER GLU TYR ASN ARG ASP GLU THR VAL LEU GLU SEQRES 18 A 555 SER TYR ARG THR ASN SER LEU ARG LYS ILE ASN SER ASN SEQRES 19 A 555 HIS GLY ILE ASP ILE ARG ALA ASN SER LEU PHE THR GLU SEQRES 20 A 555 GLN GLU LEU LEU ASN ILE TYR SER GLN GLU LEU LEU ASN SEQRES 21 A 555 ARG GLY ASN LEU ALA ALA ALA SER ASP ILE VAL ARG LEU SEQRES 22 A 555 LEU ALA LEU LYS ASN PHE GLY GLY VAL TYR LEU ASP VAL SEQRES 23 A 555 ASP MET LEU PRO GLY ILE HIS SER ASP LEU PHE LYS THR SEQRES 24 A 555 ILE SER ARG PRO SER SER ILE GLY LEU ASP ARG TRP GLU SEQRES 25 A 555 MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS LYS TYR SEQRES 26 A 555 ILE ASN ASN TYR THR SER GLU ASN PHE ASP LYS LEU ASP SEQRES 27 A 555 GLN GLN LEU LYS ASP ASN PHE LYS LEU ILE ILE GLU SER SEQRES 28 A 555 LYS SER GLU LYS SER GLU ILE PHE SER LYS LEU GLU ASN SEQRES 29 A 555 LEU ASN VAL SER ASP LEU GLU ILE LYS ILE ALA PHE ALA SEQRES 30 A 555 LEU GLY SER VAL ILE ASN GLN ALA LEU ILE SER LYS GLN SEQRES 31 A 555 GLY SER TYR LEU THR ASN LEU VAL ILE GLU GLN VAL LYS SEQRES 32 A 555 ASN ARG TYR GLN PHE LEU ASN GLN HIS LEU ASN PRO ALA SEQRES 33 A 555 ILE GLU SER ASP ASN ASN PHE THR ASP THR THR LYS ILE SEQRES 34 A 555 PHE HIS ASP SER LEU PHE ASN SER ALA THR ALA GLU ASN SEQRES 35 A 555 SER MET PHE LEU THR LYS ILE ALA PRO TYR LEU GLN VAL SEQRES 36 A 555 GLY PHE MET PRO GLU ALA ARG SER THR ILE SER LEU SER SEQRES 37 A 555 GLY PRO GLY ALA TYR ALA SER ALA TYR TYR ASP PHE ILE SEQRES 38 A 555 ASN LEU GLN GLU ASN THR ILE GLU LYS THR LEU LYS ALA SEQRES 39 A 555 SER ASP LEU ILE GLU PHE LYS PHE PRO GLU ASN ASN LEU SEQRES 40 A 555 SER GLN LEU THR GLU GLN GLU ILE ASN SER LEU TRP SER SEQRES 41 A 555 PHE ASP GLN ALA SER ALA LYS TYR GLN PHE GLU LYS TYR SEQRES 42 A 555 VAL ARG ASP TYR THR GLY GLY SER LEU HIS ALA GLY LEU SEQRES 43 A 555 ARG GLY SER HIS HIS HIS HIS HIS HIS HET MN A1542 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN MN 2+ FORMUL 3 HOH *233(H2 O) HELIX 1 1 SER A 5 ALA A 13 1 9 HELIX 2 2 GLU A 20 LYS A 35 1 16 HELIX 3 3 ASN A 40 TYR A 62 1 23 HELIX 4 4 ARG A 67 ASN A 87 1 21 HELIX 5 5 SER A 107 ASN A 121 1 15 HELIX 6 6 LEU A 136 LEU A 156 1 21 HELIX 7 7 LEU A 156 GLN A 161 1 6 HELIX 8 8 ASP A 166 ILE A 193 1 28 HELIX 9 9 THR A 200 TYR A 213 1 14 HELIX 10 10 ASP A 216 SER A 233 1 18 HELIX 11 11 ARG A 240 ASN A 242 5 3 HELIX 12 12 GLU A 247 LEU A 259 1 13 HELIX 13 13 ASN A 263 GLY A 280 1 18 HELIX 14 14 GLY A 307 TYR A 322 1 16 HELIX 15 15 SER A 331 LYS A 336 1 6 HELIX 16 16 GLN A 340 SER A 351 1 12 HELIX 17 17 GLU A 354 ILE A 358 5 5 HELIX 18 18 SER A 392 SER A 419 1 28 HELIX 19 19 ASN A 422 ASN A 436 1 15 HELIX 20 20 ASN A 442 ALA A 450 1 9 HELIX 21 21 PRO A 451 VAL A 455 5 5 HELIX 22 22 SER A 463 SER A 468 1 6 HELIX 23 23 GLY A 469 LEU A 483 1 15 HELIX 24 24 LYS A 493 LYS A 501 5 9 HELIX 25 25 PRO A 503 LEU A 507 5 5 HELIX 26 26 THR A 511 ASN A 516 1 6 HELIX 27 27 ASP A 522 THR A 538 1 17 SHEET 1 A 2 SER A 91 PRO A 92 0 SHEET 2 A 2 ASN A 366 VAL A 367 -1 O VAL A 367 N SER A 91 SHEET 1 B 6 GLY A 236 ASP A 238 0 SHEET 2 B 6 ASN A 125 TYR A 130 1 N LEU A 128 O ILE A 237 SHEET 3 B 6 ASN A 96 VAL A 100 1 N PHE A 99 O LYS A 127 SHEET 4 B 6 GLY A 281 LEU A 284 1 O VAL A 282 N HIS A 98 SHEET 5 B 6 SER A 380 SER A 388 -1 O SER A 388 N GLY A 281 SHEET 6 B 6 LYS A 373 ALA A 377 -1 N LYS A 373 O ILE A 387 LINK OE2 GLU A 514 MN MN A1542 1555 1555 2.52 LINK O HOH A 637 MN MN A1542 1555 1555 2.49 LINK O HOH A 745 MN MN A1542 1555 1555 2.61 LINK O HOH A 750 MN MN A1542 1555 1555 2.15 CISPEP 1 LYS A 336 LEU A 337 0 -0.33 SITE 1 AC1 6 ASP A 287 GLU A 514 SER A 517 HOH A 637 SITE 2 AC1 6 HOH A 745 HOH A 750 CRYST1 141.908 141.908 65.946 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007047 0.004068 0.000000 0.00000 SCALE2 0.000000 0.008137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015164 0.00000