HEADER STRUCTURAL PROTEIN 08-JUL-11 3SSS TITLE CCMK1 WITH RESIDUES 103-113 DELETED COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON DIOXIDE CONCENTRATING MECHANISM PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 1-102; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: CCMK1, TLL0946; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS BACTERIAL MICROCOMPARTMENT FOLD, SHELL FORMING, STRUCTURAL, PORE KEYWDS 2 FORMING, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KIMBER,B.SAMBORSKA REVDAT 3 13-SEP-23 3SSS 1 REMARK SEQADV REVDAT 2 08-NOV-17 3SSS 1 REMARK REVDAT 1 11-JUL-12 3SSS 0 JRNL AUTH B.SAMBORSKA,M.S.KIMBER JRNL TITL A CCMK2 DOUBLE LAYER IS THE DOMINANT ARCHITECTURAL FEATURE JRNL TITL 2 OF THE BETA-CARBOXYSOMAL SHELL FACET JRNL REF STRUCTURE 2012 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 42961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2934 - 4.4154 1.00 4362 230 0.1440 0.1688 REMARK 3 2 4.4154 - 3.5050 1.00 4203 221 0.1408 0.1958 REMARK 3 3 3.5050 - 3.0621 1.00 4154 219 0.1791 0.2330 REMARK 3 4 3.0621 - 2.7822 1.00 4121 217 0.1851 0.2152 REMARK 3 5 2.7822 - 2.5828 1.00 4105 216 0.1711 0.2275 REMARK 3 6 2.5828 - 2.4305 1.00 4099 216 0.1753 0.2446 REMARK 3 7 2.4305 - 2.3088 1.00 4059 213 0.1800 0.2444 REMARK 3 8 2.3088 - 2.2083 1.00 4114 217 0.1800 0.2601 REMARK 3 9 2.2083 - 2.1233 0.99 4054 213 0.1846 0.2396 REMARK 3 10 2.1233 - 2.0500 0.86 3541 187 0.1933 0.2472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85800 REMARK 3 B22 (A**2) : 0.70150 REMARK 3 B33 (A**2) : -3.55950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 4793 REMARK 3 ANGLE : 1.785 6509 REMARK 3 CHIRALITY : 0.110 787 REMARK 3 PLANARITY : 0.008 844 REMARK 3 DIHEDRAL : 16.044 1745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -24.7876 -35.0659 14.3147 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.2866 REMARK 3 T33: 0.2850 T12: -0.0712 REMARK 3 T13: -0.0388 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.8787 L22: 0.7552 REMARK 3 L33: 2.6185 L12: 0.2150 REMARK 3 L13: -0.0935 L23: -0.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: 0.0032 S13: -0.0943 REMARK 3 S21: -0.1686 S22: -0.0106 S23: 0.1290 REMARK 3 S31: 0.2275 S32: -0.3701 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -15.5711 -19.2834 0.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.3014 REMARK 3 T33: 0.2053 T12: -0.0154 REMARK 3 T13: -0.0774 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.4105 L22: 1.9736 REMARK 3 L33: 0.8131 L12: 1.2313 REMARK 3 L13: -0.9513 L23: -0.5744 REMARK 3 S TENSOR REMARK 3 S11: -0.1836 S12: 0.3888 S13: 0.1792 REMARK 3 S21: -0.3000 S22: 0.2794 S23: 0.2199 REMARK 3 S31: -0.0739 S32: -0.1828 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -5.7499 -1.2261 9.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.2339 REMARK 3 T33: 0.2260 T12: 0.0482 REMARK 3 T13: 0.0044 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.4528 L22: 0.8913 REMARK 3 L33: 1.7364 L12: 0.4560 REMARK 3 L13: 0.4821 L23: 1.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.0008 S13: -0.0100 REMARK 3 S21: -0.1418 S22: 0.0118 S23: 0.0318 REMARK 3 S31: -0.1999 S32: -0.2078 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): -4.5151 1.8302 31.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1811 REMARK 3 T33: 0.2363 T12: 0.0157 REMARK 3 T13: -0.0065 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.8384 L22: 1.0791 REMARK 3 L33: 1.6160 L12: 0.0881 REMARK 3 L13: -0.5946 L23: -0.6961 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0152 S13: 0.1232 REMARK 3 S21: 0.1112 S22: -0.0435 S23: 0.0209 REMARK 3 S31: -0.1512 S32: -0.1361 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' REMARK 3 ORIGIN FOR THE GROUP (A): -13.8999 -13.1777 45.7220 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.2477 REMARK 3 T33: 0.2346 T12: 0.0518 REMARK 3 T13: 0.0800 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.7342 L22: 1.1524 REMARK 3 L33: 1.1871 L12: 0.1444 REMARK 3 L13: 0.3912 L23: -0.6480 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.1448 S13: 0.0181 REMARK 3 S21: 0.2983 S22: 0.0919 S23: 0.1565 REMARK 3 S31: -0.1359 S32: -0.1570 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): -23.4427 -31.8850 36.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.2972 REMARK 3 T33: 0.2808 T12: -0.0466 REMARK 3 T13: 0.0460 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.4708 L22: 1.2281 REMARK 3 L33: 2.4978 L12: 0.3788 REMARK 3 L13: 0.9900 L23: 0.9441 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: -0.0832 S13: 0.0186 REMARK 3 S21: 0.0862 S22: -0.0640 S23: 0.2336 REMARK 3 S31: 0.2151 S32: -0.4271 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DCM WITH CRYO-COOLED 1ST CRYSTAL REMARK 200 SAGITTALLY BENT 2ND CRYSTAL REMARK 200 FOLLOWED BY VERTICALLY FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3SSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M (NH4)2SO4,0.1M BIS REMARK 280 -TRIS , PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 MET C 1 REMARK 465 HIS C 105 REMARK 465 HIS C 106 REMARK 465 HIS C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 MET D 1 REMARK 465 HIS D 106 REMARK 465 HIS D 107 REMARK 465 HIS D 108 REMARK 465 HIS D 109 REMARK 465 HIS D 110 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 HIS E 109 REMARK 465 HIS E 110 REMARK 465 MET F 1 REMARK 465 HIS F 105 REMARK 465 HIS F 106 REMARK 465 HIS F 107 REMARK 465 HIS F 108 REMARK 465 HIS F 109 REMARK 465 HIS F 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 28 HB2 HIS A 105 1.29 REMARK 500 HD22 ASN C 63 HH11 ARG C 66 1.33 REMARK 500 HD1 HIS D 82 H ASN D 84 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 23 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 MET C 23 CG - SD - CE ANGL. DEV. = -12.9 DEGREES REMARK 500 MET D 23 CG - SD - CE ANGL. DEV. = -14.4 DEGREES REMARK 500 MET E 23 CG - SD - CE ANGL. DEV. = -15.4 DEGREES REMARK 500 MET F 23 CG - SD - CE ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 3 72.77 -118.97 REMARK 500 VAL D 88 -40.38 -131.32 REMARK 500 PRO D 90 57.05 -68.83 REMARK 500 ASN E 68 105.73 -53.07 REMARK 500 HIS E 76 147.27 -172.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA C 2 ILE C 3 141.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 111 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SSQ RELATED DB: PDB REMARK 900 RELATED ID: 3SSR RELATED DB: PDB DBREF 3SSS A 1 102 UNP Q8DKB3 Q8DKB3_THEEB 1 102 DBREF 3SSS B 1 102 UNP Q8DKB3 Q8DKB3_THEEB 1 102 DBREF 3SSS C 1 102 UNP Q8DKB3 Q8DKB3_THEEB 1 102 DBREF 3SSS D 1 102 UNP Q8DKB3 Q8DKB3_THEEB 1 102 DBREF 3SSS E 1 102 UNP Q8DKB3 Q8DKB3_THEEB 1 102 DBREF 3SSS F 1 102 UNP Q8DKB3 Q8DKB3_THEEB 1 102 SEQADV 3SSS LEU A 103 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS GLU A 104 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS A 105 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS A 106 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS A 107 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS A 108 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS A 109 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS A 110 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS LEU B 103 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS GLU B 104 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS B 105 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS B 106 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS B 107 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS B 108 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS B 109 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS B 110 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS LEU C 103 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS GLU C 104 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS C 105 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS C 106 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS C 107 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS C 108 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS C 109 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS C 110 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS LEU D 103 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS GLU D 104 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS D 105 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS D 106 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS D 107 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS D 108 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS D 109 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS D 110 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS LEU E 103 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS GLU E 104 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS E 105 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS E 106 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS E 107 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS E 108 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS E 109 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS E 110 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS LEU F 103 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS GLU F 104 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS F 105 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS F 106 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS F 107 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS F 108 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS F 109 UNP Q8DKB3 EXPRESSION TAG SEQADV 3SSS HIS F 110 UNP Q8DKB3 EXPRESSION TAG SEQRES 1 A 110 MET ALA ILE ALA VAL GLY MET ILE GLU THR LEU GLY PHE SEQRES 2 A 110 PRO ALA VAL VAL GLU ALA ALA ASP ALA MET VAL LYS ALA SEQRES 3 A 110 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 A 110 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 A 110 VAL GLN ALA SER VAL ALA ALA GLY VAL GLU ASN VAL LYS SEQRES 6 A 110 ARG VAL ASN GLY GLY GLN VAL LEU SER THR HIS ILE ILE SEQRES 7 A 110 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 A 110 ARG TYR THR GLU ALA VAL GLU GLN PHE ARG GLU LEU GLU SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS SEQRES 1 B 110 MET ALA ILE ALA VAL GLY MET ILE GLU THR LEU GLY PHE SEQRES 2 B 110 PRO ALA VAL VAL GLU ALA ALA ASP ALA MET VAL LYS ALA SEQRES 3 B 110 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 B 110 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 B 110 VAL GLN ALA SER VAL ALA ALA GLY VAL GLU ASN VAL LYS SEQRES 6 B 110 ARG VAL ASN GLY GLY GLN VAL LEU SER THR HIS ILE ILE SEQRES 7 B 110 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 B 110 ARG TYR THR GLU ALA VAL GLU GLN PHE ARG GLU LEU GLU SEQRES 9 B 110 HIS HIS HIS HIS HIS HIS SEQRES 1 C 110 MET ALA ILE ALA VAL GLY MET ILE GLU THR LEU GLY PHE SEQRES 2 C 110 PRO ALA VAL VAL GLU ALA ALA ASP ALA MET VAL LYS ALA SEQRES 3 C 110 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 C 110 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 C 110 VAL GLN ALA SER VAL ALA ALA GLY VAL GLU ASN VAL LYS SEQRES 6 C 110 ARG VAL ASN GLY GLY GLN VAL LEU SER THR HIS ILE ILE SEQRES 7 C 110 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 C 110 ARG TYR THR GLU ALA VAL GLU GLN PHE ARG GLU LEU GLU SEQRES 9 C 110 HIS HIS HIS HIS HIS HIS SEQRES 1 D 110 MET ALA ILE ALA VAL GLY MET ILE GLU THR LEU GLY PHE SEQRES 2 D 110 PRO ALA VAL VAL GLU ALA ALA ASP ALA MET VAL LYS ALA SEQRES 3 D 110 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 D 110 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 D 110 VAL GLN ALA SER VAL ALA ALA GLY VAL GLU ASN VAL LYS SEQRES 6 D 110 ARG VAL ASN GLY GLY GLN VAL LEU SER THR HIS ILE ILE SEQRES 7 D 110 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 D 110 ARG TYR THR GLU ALA VAL GLU GLN PHE ARG GLU LEU GLU SEQRES 9 D 110 HIS HIS HIS HIS HIS HIS SEQRES 1 E 110 MET ALA ILE ALA VAL GLY MET ILE GLU THR LEU GLY PHE SEQRES 2 E 110 PRO ALA VAL VAL GLU ALA ALA ASP ALA MET VAL LYS ALA SEQRES 3 E 110 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 E 110 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 E 110 VAL GLN ALA SER VAL ALA ALA GLY VAL GLU ASN VAL LYS SEQRES 6 E 110 ARG VAL ASN GLY GLY GLN VAL LEU SER THR HIS ILE ILE SEQRES 7 E 110 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 E 110 ARG TYR THR GLU ALA VAL GLU GLN PHE ARG GLU LEU GLU SEQRES 9 E 110 HIS HIS HIS HIS HIS HIS SEQRES 1 F 110 MET ALA ILE ALA VAL GLY MET ILE GLU THR LEU GLY PHE SEQRES 2 F 110 PRO ALA VAL VAL GLU ALA ALA ASP ALA MET VAL LYS ALA SEQRES 3 F 110 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 F 110 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 F 110 VAL GLN ALA SER VAL ALA ALA GLY VAL GLU ASN VAL LYS SEQRES 6 F 110 ARG VAL ASN GLY GLY GLN VAL LEU SER THR HIS ILE ILE SEQRES 7 F 110 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 F 110 ARG TYR THR GLU ALA VAL GLU GLN PHE ARG GLU LEU GLU SEQRES 9 F 110 HIS HIS HIS HIS HIS HIS HET CL D 111 1 HETNAM CL CHLORIDE ION FORMUL 7 CL CL 1- FORMUL 8 HOH *213(H2 O) HELIX 1 1 GLY A 12 ALA A 27 1 16 HELIX 2 2 ASP A 49 LYS A 65 1 17 HELIX 3 3 HIS A 82 VAL A 88 5 7 HELIX 4 4 THR A 94 ALA A 96 5 3 HELIX 5 5 VAL A 97 GLU A 102 1 6 HELIX 6 6 GLY B 12 ALA B 27 1 16 HELIX 7 7 ASP B 49 LYS B 65 1 17 HELIX 8 8 HIS B 82 TYR B 87 1 6 HELIX 9 9 THR B 94 ALA B 96 5 3 HELIX 10 10 VAL B 97 GLU B 102 1 6 HELIX 11 11 GLY C 12 ALA C 27 1 16 HELIX 12 12 ASP C 49 LYS C 65 1 17 HELIX 13 13 ASN C 84 VAL C 88 5 5 HELIX 14 14 THR C 94 GLU C 104 1 11 HELIX 15 15 GLY D 12 ALA D 27 1 16 HELIX 16 16 ASP D 49 ARG D 66 1 18 HELIX 17 17 HIS D 82 VAL D 88 5 7 HELIX 18 18 THR D 94 ALA D 96 5 3 HELIX 19 19 VAL D 97 GLU D 104 1 8 HELIX 20 20 GLY E 12 ALA E 27 1 16 HELIX 21 21 ASP E 49 LYS E 65 1 17 HELIX 22 22 HIS E 82 VAL E 88 5 7 HELIX 23 23 THR E 94 ALA E 96 5 3 HELIX 24 24 VAL E 97 GLU E 102 1 6 HELIX 25 25 GLY F 12 ALA F 27 1 16 HELIX 26 26 ASP F 49 ARG F 66 1 18 HELIX 27 27 GLU F 83 LEU F 89 1 7 HELIX 28 28 THR F 94 GLU F 104 1 11 SHEET 1 A 4 THR A 30 LYS A 36 0 SHEET 2 A 4 ARG A 41 GLY A 48 -1 O ILE A 45 N VAL A 32 SHEET 3 A 4 ALA A 4 LEU A 11 -1 N THR A 10 O VAL A 42 SHEET 4 A 4 VAL A 72 ILE A 78 -1 O SER A 74 N GLU A 9 SHEET 1 B 4 THR B 30 GLY B 38 0 SHEET 2 B 4 ARG B 41 GLY B 48 -1 O ILE B 45 N VAL B 32 SHEET 3 B 4 ALA B 4 LEU B 11 -1 N THR B 10 O VAL B 42 SHEET 4 B 4 VAL B 72 ILE B 78 -1 O SER B 74 N GLU B 9 SHEET 1 C 4 VAL C 29 LYS C 36 0 SHEET 2 C 4 ARG C 41 GLY C 48 -1 O ILE C 45 N VAL C 32 SHEET 3 C 4 ALA C 4 LEU C 11 -1 N THR C 10 O VAL C 42 SHEET 4 C 4 GLN C 71 ILE C 78 -1 O LEU C 73 N GLU C 9 SHEET 1 D 4 VAL D 29 LYS D 36 0 SHEET 2 D 4 ARG D 41 GLY D 48 -1 O THR D 43 N GLU D 35 SHEET 3 D 4 ALA D 4 LEU D 11 -1 N THR D 10 O VAL D 42 SHEET 4 D 4 VAL D 72 ILE D 78 -1 O SER D 74 N GLU D 9 SHEET 1 E 4 THR E 30 GLY E 38 0 SHEET 2 E 4 ARG E 41 GLY E 48 -1 O THR E 43 N GLU E 35 SHEET 3 E 4 ALA E 4 LEU E 11 -1 N THR E 10 O VAL E 42 SHEET 4 E 4 GLN E 71 ILE E 78 -1 O LEU E 73 N GLU E 9 SHEET 1 F 4 VAL F 29 LYS F 36 0 SHEET 2 F 4 ARG F 41 GLY F 48 -1 O ARG F 47 N THR F 30 SHEET 3 F 4 ALA F 4 LEU F 11 -1 N THR F 10 O VAL F 42 SHEET 4 F 4 GLN F 71 ILE F 78 -1 O SER F 74 N GLU F 9 SITE 1 AC1 2 ARG D 92 GLU D 95 CRYST1 78.400 78.600 110.800 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009025 0.00000