HEADER LYASE 11-JUL-11 3STP TITLE CRYSTAL STRUCTURE OF A PUTATIVE GALACTONATE DEHYDRATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTONATE DEHYDRATASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LABRENZIA AGGREGATA IAM 12614; SOURCE 3 ORGANISM_TAXID: 384765; SOURCE 4 GENE: SIAM614_17839; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PSI BIOLOGY, STRUCTURAL GENOMICS, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, MANDELATE RACEMASE, NYSGRC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ESWARAMOORTHY,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,S.C.ALMO,S.SWAMINATHAN,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 13-SEP-23 3STP 1 REMARK SEQADV LINK REVDAT 1 17-AUG-11 3STP 0 JRNL AUTH S.ESWARAMOORTHY,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GALACTONATE DEHYDRATASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 365 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.01 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.07 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3STP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 29.10 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3SQS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M MAGNESIUM FORMATE, 0.1M BISTRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.62200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.36700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 67.62200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 58.36700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.62200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 58.36700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 67.62200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 58.36700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.62200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 58.36700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.62200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.36700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 67.62200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 58.36700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.62200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.62200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 58.36700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -236.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 627 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 63.97 25.79 REMARK 500 LYS A 152 -114.83 -167.10 REMARK 500 GLU A 241 60.16 39.78 REMARK 500 SER A 270 164.81 72.34 REMARK 500 ARG A 292 -47.48 -139.02 REMARK 500 ALA A 317 142.52 83.50 REMARK 500 GLU A 344 -88.46 -114.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 391 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 214 OE2 REMARK 620 2 GLU A 240 OE2 88.8 REMARK 620 3 GLU A 266 OE1 166.1 88.2 REMARK 620 4 HOH A 392 O 94.0 172.9 90.6 REMARK 620 5 HOH A 393 O 82.8 98.2 84.2 88.6 REMARK 620 6 HOH A 394 O 90.0 86.0 103.4 87.5 171.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 391 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200636 RELATED DB: TARGETDB DBREF 3STP A 1 390 UNP A0NP48 A0NP48_9RHOB 1 390 SEQADV 3STP MET A -21 UNP A0NP48 EXPRESSION TAG SEQADV 3STP HIS A -20 UNP A0NP48 EXPRESSION TAG SEQADV 3STP HIS A -19 UNP A0NP48 EXPRESSION TAG SEQADV 3STP HIS A -18 UNP A0NP48 EXPRESSION TAG SEQADV 3STP HIS A -17 UNP A0NP48 EXPRESSION TAG SEQADV 3STP HIS A -16 UNP A0NP48 EXPRESSION TAG SEQADV 3STP HIS A -15 UNP A0NP48 EXPRESSION TAG SEQADV 3STP SER A -14 UNP A0NP48 EXPRESSION TAG SEQADV 3STP SER A -13 UNP A0NP48 EXPRESSION TAG SEQADV 3STP GLY A -12 UNP A0NP48 EXPRESSION TAG SEQADV 3STP VAL A -11 UNP A0NP48 EXPRESSION TAG SEQADV 3STP ASP A -10 UNP A0NP48 EXPRESSION TAG SEQADV 3STP LEU A -9 UNP A0NP48 EXPRESSION TAG SEQADV 3STP GLY A -8 UNP A0NP48 EXPRESSION TAG SEQADV 3STP THR A -7 UNP A0NP48 EXPRESSION TAG SEQADV 3STP GLU A -6 UNP A0NP48 EXPRESSION TAG SEQADV 3STP ASN A -5 UNP A0NP48 EXPRESSION TAG SEQADV 3STP LEU A -4 UNP A0NP48 EXPRESSION TAG SEQADV 3STP TYR A -3 UNP A0NP48 EXPRESSION TAG SEQADV 3STP PHE A -2 UNP A0NP48 EXPRESSION TAG SEQADV 3STP GLN A -1 UNP A0NP48 EXPRESSION TAG SEQADV 3STP SER A 0 UNP A0NP48 EXPRESSION TAG SEQRES 1 A 412 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 412 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS ILE LYS SEQRES 3 A 412 SER VAL ARG THR ARG VAL TRP THR TRP LYS GLY PRO THR SEQRES 4 A 412 VAL PRO PRO GLN GLY ASN PHE CYS THR ASN ALA SER ASP SEQRES 5 A 412 ALA LEU TRP MET LYS GLY ASP ALA MET SER SER PHE ARG SEQRES 6 A 412 PHE HIS GLN TRP LEU THR CYS GLU VAL GLU THR GLU ASP SEQRES 7 A 412 GLY THR ILE GLY ILE GLY ASN ALA ALA LEU ALA PRO SER SEQRES 8 A 412 VAL VAL LYS LYS VAL ILE ASP ASP TRP TYR ALA PRO LEU SEQRES 9 A 412 VAL ILE GLY GLU ASP PRO PHE ASP TYR ALA TYR ILE TRP SEQRES 10 A 412 GLU LYS MET TYR ARG ARG SER HIS ALA TRP GLY ARG LYS SEQRES 11 A 412 GLY ILE GLY MET THR ALA ILE SER ALA ILE ASP ILE ALA SEQRES 12 A 412 ILE TRP ASP LEU MET GLY LYS LEU VAL GLY LYS PRO VAL SEQRES 13 A 412 PHE LYS LEU LEU GLY GLY ARG THR LYS ASP ARG ILE PRO SEQRES 14 A 412 VAL TYR TYR SER LYS LEU TYR ALA GLY SER ILE GLU ALA SEQRES 15 A 412 MET GLN LYS GLU ALA GLU GLU ALA MET LYS GLY GLY TYR SEQRES 16 A 412 LYS ALA PHE LYS SER ARG PHE GLY TYR GLY PRO LYS ASP SEQRES 17 A 412 GLY MET PRO GLY MET ARG GLU ASN LEU LYS ARG VAL GLU SEQRES 18 A 412 ALA VAL ARG GLU VAL ILE GLY TYR ASP ASN ASP LEU MET SEQRES 19 A 412 LEU GLU CYS TYR MET GLY TRP ASN LEU ASP TYR ALA LYS SEQRES 20 A 412 ARG MET LEU PRO LYS LEU ALA PRO TYR GLU PRO ARG TRP SEQRES 21 A 412 LEU GLU GLU PRO VAL ILE ALA ASP ASP VAL ALA GLY TYR SEQRES 22 A 412 ALA GLU LEU ASN ALA MET ASN ILE VAL PRO ILE SER GLY SEQRES 23 A 412 GLY GLU HIS GLU PHE SER VAL ILE GLY CYS ALA GLU LEU SEQRES 24 A 412 ILE ASN ARG LYS ALA VAL SER VAL LEU GLN TYR ASP THR SEQRES 25 A 412 ASN ARG VAL GLY GLY ILE THR ALA ALA GLN LYS ILE ASN SEQRES 26 A 412 ALA ILE ALA GLU ALA ALA GLN ILE PRO VAL ILE PRO HIS SEQRES 27 A 412 ALA GLY GLN MET HIS ASN TYR HIS LEU THR MET ALA ASN SEQRES 28 A 412 THR ASN CYS PRO ILE SER GLU TYR PHE PRO VAL PHE ASP SEQRES 29 A 412 VAL GLU VAL GLY ASN GLU LEU PHE TYR TYR ILE PHE GLU SEQRES 30 A 412 GLY ASP PRO GLU ALA VAL ASP GLY TYR LEU GLN LEU ASP SEQRES 31 A 412 ASP ASP LEU PRO GLY LEU GLY ILE ALA ILE SER ASP LYS SEQRES 32 A 412 HIS LEU GLN HIS PHE ASP ILE THR GLU HET MG A 391 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *238(H2 O) HELIX 1 1 ASN A 27 LEU A 32 5 6 HELIX 2 2 ALA A 67 TRP A 78 1 12 HELIX 3 3 TYR A 79 ILE A 84 1 6 HELIX 4 4 ASP A 87 PHE A 89 5 3 HELIX 5 5 ASP A 90 SER A 102 1 13 HELIX 6 6 SER A 102 ARG A 107 1 6 HELIX 7 7 GLY A 109 VAL A 130 1 22 HELIX 8 8 PRO A 133 GLY A 139 1 7 HELIX 9 9 SER A 157 LYS A 170 1 14 HELIX 10 10 GLY A 183 LYS A 185 5 3 HELIX 11 11 ASP A 186 GLY A 206 1 21 HELIX 12 12 ASN A 220 ALA A 232 1 13 HELIX 13 13 PRO A 233 GLU A 235 5 3 HELIX 14 14 ASP A 247 MET A 257 1 11 HELIX 15 15 SER A 270 ARG A 280 1 11 HELIX 16 16 ASP A 289 GLY A 294 1 6 HELIX 17 17 GLY A 294 GLN A 310 1 17 HELIX 18 18 GLN A 319 ALA A 328 1 10 HELIX 19 19 LEU A 349 ILE A 353 1 5 HELIX 20 20 HIS A 382 GLN A 384 5 3 SHEET 1 A 4 ILE A 59 ALA A 64 0 SHEET 2 A 4 GLN A 46 THR A 54 -1 N CYS A 50 O GLY A 62 SHEET 3 A 4 ILE A 3 TRP A 13 -1 N TRP A 11 O TRP A 47 SHEET 4 A 4 PHE A 386 THR A 389 -1 O THR A 389 N VAL A 10 SHEET 1 B 7 VAL A 285 LEU A 286 0 SHEET 2 B 7 ILE A 262 GLY A 264 1 N GLY A 264 O VAL A 285 SHEET 3 B 7 TRP A 238 GLU A 240 1 N LEU A 239 O SER A 263 SHEET 4 B 7 ASP A 210 GLU A 214 1 N LEU A 213 O GLU A 240 SHEET 5 B 7 ALA A 175 ARG A 179 1 N PHE A 176 O MET A 212 SHEET 6 B 7 ILE A 146 SER A 151 1 N TYR A 150 O LYS A 177 SHEET 7 B 7 SER A 335 TYR A 337 1 O TYR A 337 N SER A 151 SHEET 1 C 7 VAL A 285 LEU A 286 0 SHEET 2 C 7 ILE A 262 GLY A 264 1 N GLY A 264 O VAL A 285 SHEET 3 C 7 TRP A 238 GLU A 240 1 N LEU A 239 O SER A 263 SHEET 4 C 7 ASP A 210 GLU A 214 1 N LEU A 213 O GLU A 240 SHEET 5 C 7 ALA A 175 ARG A 179 1 N PHE A 176 O MET A 212 SHEET 6 C 7 ILE A 146 SER A 151 1 N TYR A 150 O LYS A 177 SHEET 7 C 7 TYR A 364 LEU A 365 -1 O LEU A 365 N ILE A 146 SHEET 1 D 2 PHE A 354 GLU A 355 0 SHEET 2 D 2 ALA A 377 ILE A 378 -1 O ALA A 377 N GLU A 355 LINK OE2 GLU A 214 MG MG A 391 1555 1555 2.03 LINK OE2 GLU A 240 MG MG A 391 1555 1555 2.06 LINK OE1 GLU A 266 MG MG A 391 1555 1555 2.11 LINK MG MG A 391 O HOH A 392 1555 1555 2.12 LINK MG MG A 391 O HOH A 393 1555 1555 2.04 LINK MG MG A 391 O HOH A 394 1555 1555 2.14 SITE 1 AC1 6 GLU A 214 GLU A 240 GLU A 266 HOH A 392 SITE 2 AC1 6 HOH A 393 HOH A 394 CRYST1 135.244 135.244 116.734 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008566 0.00000