HEADER UNKNOWN FUNCTION 11-JUL-11 3SUM TITLE CRYSTAL STRUCTURE OF CERATO-PLATANIN 5 FROM M. PERNICIOSA (MPCP5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CERATO-PLATANIN-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MONILIOPHTHORA PERNICIOSA; SOURCE 3 ORGANISM_TAXID: 153609; SOURCE 4 GENE: CP5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI II; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PETSUMO KEYWDS DOUBLE PSI BETA BARREL, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.F.OLIVEIRA,M.R.O.BARSOTTINI,G.ZAPAROLI,L.O.MACHADO,S.M.G.DIAS, AUTHOR 2 G.A.G.PEREIRA,A.L.B.AMBROSIO REVDAT 4 13-SEP-23 3SUM 1 REMARK REVDAT 3 06-FEB-19 3SUM 1 JRNL REVDAT 2 08-NOV-17 3SUM 1 REMARK REVDAT 1 11-JUL-12 3SUM 0 JRNL AUTH M.R.DE O BARSOTTINI,J.F.DE OLIVEIRA,D.ADAMOSKI,P.J.TEIXEIRA, JRNL AUTH 2 P.F.DO PRADO,H.O.TIEZZI,M.L.SFORCA,A.CASSAGO,R.V.PORTUGAL, JRNL AUTH 3 P.S.DE OLIVEIRA,A.C.DE M ZERI,S.M.DIAS,G.A.PEREIRA, JRNL AUTH 4 A.L.AMBROSIO JRNL TITL FUNCTIONAL DIVERSIFICATION OF CERATO-PLATANINS IN JRNL TITL 2 MONILIOPHTHORA PERNICIOSA AS SEEN BY DIFFERENTIAL EXPRESSION JRNL TITL 3 AND PROTEIN FUNCTION SPECIALIZATION. JRNL REF MOL. PLANT MICROBE INTERACT. V. 26 1281 2013 JRNL REFN ISSN 0894-0282 JRNL PMID 23902259 JRNL DOI 10.1094/MPMI-05-13-0148-R REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 785 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.802 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4284 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5849 ; 1.887 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 6.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;36.300 ;25.622 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;12.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 8.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3368 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2690 ; 1.149 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4311 ; 1.891 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 3.135 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1535 ; 4.829 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.43701 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 23.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : 0.32700 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 5.5, 5% PEG REMARK 280 400, 18% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.83500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 SER D 21 REMARK 465 ASP D 155 REMARK 465 PRO D 156 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 55 CB CG CD CE NZ REMARK 480 LYS B 49 CE NZ REMARK 480 GLU B 79 CD OE1 OE2 REMARK 480 GLU B 102 CG CD OE1 OE2 REMARK 480 LYS B 151 CE NZ REMARK 480 LYS C 42 CD CE NZ REMARK 480 LYS C 49 CE NZ REMARK 480 LYS C 55 CB CG CD CE NZ REMARK 480 GLU C 79 CD OE1 OE2 REMARK 480 LYS C 151 CE NZ REMARK 480 LYS D 42 CG CD CE NZ REMARK 480 LYS D 49 CE NZ REMARK 480 LYS D 151 CE NZ REMARK 480 GLN D 152 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 394 O HOH A 395 2.06 REMARK 500 O HOH C 363 O HOH C 392 2.13 REMARK 500 OE1 GLU A 103 OH TYR B 138 2.15 REMARK 500 OD1 ASP D 141 OG SER D 143 2.16 REMARK 500 OD2 ASP A 53 ND1 HIS A 56 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 349 O HOH D 346 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 102 CB GLU B 102 CG -0.158 REMARK 500 CYS D 83 CB CYS D 83 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 100 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG D 87 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 76 -51.69 81.94 REMARK 500 LYS A 89 -122.29 46.37 REMARK 500 ASN B 66 2.93 81.23 REMARK 500 ASN C 66 3.03 88.00 REMARK 500 LYS C 89 -122.27 43.84 REMARK 500 ASP D 28 116.16 -161.07 REMARK 500 LYS D 89 -113.16 38.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SUJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CERATO-PLATANIN 1 FROM M. PERNICIOSA (MPCP1) REMARK 900 RELATED ID: 3SUK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CERATO-PLATANIN 2 FROM M. PERNICIOSA (MPCP2) REMARK 900 RELATED ID: 3SUL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CERATO-PLATANIN 3 FROM M. PERNICIOSA (MPCP3) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AS PER THE AUTHORS THE SEQUENCE OF THE CERATO-PLATANIN 5 PROTEIN IS REMARK 999 INCORRECT IN THE UNP DATABASE. IT IS MISSING THE C-TERMINAL REMARK 999 SEQUENCE. DBREF 3SUM A 21 156 PDB 3SUM 3SUM 21 156 DBREF 3SUM B 21 156 PDB 3SUM 3SUM 21 156 DBREF 3SUM C 21 156 PDB 3SUM 3SUM 21 156 DBREF 3SUM D 21 156 PDB 3SUM 3SUM 21 156 SEQRES 1 A 136 SER ASN TRP LEU ILE LYS TRP ASP ASP LYS PHE GLN ASN SEQRES 2 A 136 ASP THR LEU SER ILE SER GLU PHE LYS CYS SER ALA ALA SEQRES 3 A 136 LEU ALA LYS LEU GLY PRO ASP PRO LYS HIS PRO PRO THR SEQRES 4 A 136 LYS LEU GLY GLU VAL LEU ASN PHE PRO HIS PHE VAL ALA SEQRES 5 A 136 ALA PRO GLU ALA GLN THR GLU CYS GLY SER CYS TRP LYS SEQRES 6 A 136 LEU ARG TYR LYS GLY ASN HIS ALA PHE VAL THR VAL VAL SEQRES 7 A 136 ASP ARG VAL GLU GLU ALA ASN LEU PHE VAL GLY GLY THR SEQRES 8 A 136 ASP LEU VAL LYS ASN LEU THR THR PHE ASN GLY ALA PRO SEQRES 9 A 136 GLU GLY TYR ASP TRP GLY THR ALA GLN LEU PHE SER ALA SEQRES 10 A 136 TYR GLN VAL ASP GLY SER CYS CYS GLN GLN ASN THR GLY SEQRES 11 A 136 LYS GLN CYS GLY ASP PRO SEQRES 1 B 136 SER ASN TRP LEU ILE LYS TRP ASP ASP LYS PHE GLN ASN SEQRES 2 B 136 ASP THR LEU SER ILE SER GLU PHE LYS CYS SER ALA ALA SEQRES 3 B 136 LEU ALA LYS LEU GLY PRO ASP PRO LYS HIS PRO PRO THR SEQRES 4 B 136 LYS LEU GLY GLU VAL LEU ASN PHE PRO HIS PHE VAL ALA SEQRES 5 B 136 ALA PRO GLU ALA GLN THR GLU CYS GLY SER CYS TRP LYS SEQRES 6 B 136 LEU ARG TYR LYS GLY ASN HIS ALA PHE VAL THR VAL VAL SEQRES 7 B 136 ASP ARG VAL GLU GLU ALA ASN LEU PHE VAL GLY GLY THR SEQRES 8 B 136 ASP LEU VAL LYS ASN LEU THR THR PHE ASN GLY ALA PRO SEQRES 9 B 136 GLU GLY TYR ASP TRP GLY THR ALA GLN LEU PHE SER ALA SEQRES 10 B 136 TYR GLN VAL ASP GLY SER CYS CYS GLN GLN ASN THR GLY SEQRES 11 B 136 LYS GLN CYS GLY ASP PRO SEQRES 1 C 136 SER ASN TRP LEU ILE LYS TRP ASP ASP LYS PHE GLN ASN SEQRES 2 C 136 ASP THR LEU SER ILE SER GLU PHE LYS CYS SER ALA ALA SEQRES 3 C 136 LEU ALA LYS LEU GLY PRO ASP PRO LYS HIS PRO PRO THR SEQRES 4 C 136 LYS LEU GLY GLU VAL LEU ASN PHE PRO HIS PHE VAL ALA SEQRES 5 C 136 ALA PRO GLU ALA GLN THR GLU CYS GLY SER CYS TRP LYS SEQRES 6 C 136 LEU ARG TYR LYS GLY ASN HIS ALA PHE VAL THR VAL VAL SEQRES 7 C 136 ASP ARG VAL GLU GLU ALA ASN LEU PHE VAL GLY GLY THR SEQRES 8 C 136 ASP LEU VAL LYS ASN LEU THR THR PHE ASN GLY ALA PRO SEQRES 9 C 136 GLU GLY TYR ASP TRP GLY THR ALA GLN LEU PHE SER ALA SEQRES 10 C 136 TYR GLN VAL ASP GLY SER CYS CYS GLN GLN ASN THR GLY SEQRES 11 C 136 LYS GLN CYS GLY ASP PRO SEQRES 1 D 136 SER ASN TRP LEU ILE LYS TRP ASP ASP LYS PHE GLN ASN SEQRES 2 D 136 ASP THR LEU SER ILE SER GLU PHE LYS CYS SER ALA ALA SEQRES 3 D 136 LEU ALA LYS LEU GLY PRO ASP PRO LYS HIS PRO PRO THR SEQRES 4 D 136 LYS LEU GLY GLU VAL LEU ASN PHE PRO HIS PHE VAL ALA SEQRES 5 D 136 ALA PRO GLU ALA GLN THR GLU CYS GLY SER CYS TRP LYS SEQRES 6 D 136 LEU ARG TYR LYS GLY ASN HIS ALA PHE VAL THR VAL VAL SEQRES 7 D 136 ASP ARG VAL GLU GLU ALA ASN LEU PHE VAL GLY GLY THR SEQRES 8 D 136 ASP LEU VAL LYS ASN LEU THR THR PHE ASN GLY ALA PRO SEQRES 9 D 136 GLU GLY TYR ASP TRP GLY THR ALA GLN LEU PHE SER ALA SEQRES 10 D 136 TYR GLN VAL ASP GLY SER CYS CYS GLN GLN ASN THR GLY SEQRES 11 D 136 LYS GLN CYS GLY ASP PRO FORMUL 5 HOH *785(H2 O) HELIX 1 1 ASP A 29 ASN A 33 5 5 HELIX 2 2 SER A 37 PHE A 41 5 5 HELIX 3 3 CYS A 43 LYS A 49 1 7 HELIX 4 4 LYS A 60 VAL A 64 5 5 HELIX 5 5 GLY A 110 THR A 118 1 9 HELIX 6 6 PRO A 124 GLY A 130 1 7 HELIX 7 7 ASP A 141 GLN A 146 5 6 HELIX 8 8 ASP B 29 ASN B 33 5 5 HELIX 9 9 SER B 37 PHE B 41 5 5 HELIX 10 10 CYS B 43 ALA B 48 1 6 HELIX 11 11 LYS B 60 VAL B 64 5 5 HELIX 12 12 GLY B 110 THR B 118 1 9 HELIX 13 13 GLU B 125 GLY B 130 1 6 HELIX 14 14 ASP B 141 GLN B 146 5 6 HELIX 15 15 ASP C 29 ASN C 33 5 5 HELIX 16 16 SER C 37 PHE C 41 5 5 HELIX 17 17 CYS C 43 ALA C 48 1 6 HELIX 18 18 LYS C 60 VAL C 64 5 5 HELIX 19 19 THR C 111 THR C 118 1 8 HELIX 20 20 GLU C 125 GLY C 130 1 6 HELIX 21 21 ASP C 141 GLN C 146 5 6 HELIX 22 22 ASP D 29 ASN D 33 5 5 HELIX 23 23 SER D 37 PHE D 41 5 5 HELIX 24 24 CYS D 43 ALA D 48 1 6 HELIX 25 25 LYS D 60 VAL D 64 5 5 HELIX 26 26 GLY D 110 THR D 118 1 9 HELIX 27 27 ASP D 141 GLN D 146 5 6 SHEET 1 A 7 THR A 131 GLN A 133 0 SHEET 2 A 7 LEU A 24 TRP A 27 -1 N ILE A 25 O ALA A 132 SHEET 3 A 7 LEU A 106 GLY A 109 1 O GLY A 109 N LYS A 26 SHEET 4 A 7 PHE A 70 ALA A 72 -1 N ALA A 72 O VAL A 108 SHEET 5 A 7 ASN A 91 ASP A 99 1 O VAL A 98 N VAL A 71 SHEET 6 A 7 CYS A 83 TYR A 88 -1 N TYR A 88 O ASN A 91 SHEET 7 A 7 SER A 136 VAL A 140 -1 O TYR A 138 N LYS A 85 SHEET 1 B 7 ALA B 132 GLN B 133 0 SHEET 2 B 7 LEU B 24 TRP B 27 -1 N ILE B 25 O ALA B 132 SHEET 3 B 7 LEU B 106 GLY B 109 1 O PHE B 107 N LEU B 24 SHEET 4 B 7 PHE B 70 PRO B 74 -1 N ALA B 72 O VAL B 108 SHEET 5 B 7 ASN B 91 VAL B 101 1 O VAL B 98 N VAL B 71 SHEET 6 B 7 CYS B 83 TYR B 88 -1 N TRP B 84 O VAL B 95 SHEET 7 B 7 SER B 136 VAL B 140 -1 O TYR B 138 N LYS B 85 SHEET 1 C 2 THR B 119 PHE B 120 0 SHEET 2 C 2 ALA B 123 PRO B 124 -1 O ALA B 123 N PHE B 120 SHEET 1 D 7 THR C 131 GLN C 133 0 SHEET 2 D 7 LEU C 24 ASP C 28 -1 N ILE C 25 O ALA C 132 SHEET 3 D 7 LEU C 106 GLY C 110 1 O GLY C 109 N LYS C 26 SHEET 4 D 7 PHE C 70 ALA C 72 -1 N ALA C 72 O VAL C 108 SHEET 5 D 7 ASN C 91 ASP C 99 1 O VAL C 98 N VAL C 71 SHEET 6 D 7 CYS C 83 TYR C 88 -1 N TRP C 84 O VAL C 95 SHEET 7 D 7 SER C 136 VAL C 140 -1 O TYR C 138 N LYS C 85 SHEET 1 E 2 THR C 119 PHE C 120 0 SHEET 2 E 2 ALA C 123 PRO C 124 -1 O ALA C 123 N PHE C 120 SHEET 1 F 7 THR D 131 GLN D 133 0 SHEET 2 F 7 LEU D 24 TRP D 27 -1 N ILE D 25 O ALA D 132 SHEET 3 F 7 LEU D 106 GLY D 109 1 O GLY D 109 N LYS D 26 SHEET 4 F 7 PHE D 70 ALA D 72 -1 N ALA D 72 O VAL D 108 SHEET 5 F 7 ASN D 91 ASP D 99 1 O VAL D 98 N VAL D 71 SHEET 6 F 7 CYS D 83 TYR D 88 -1 N LEU D 86 O ALA D 93 SHEET 7 F 7 SER D 136 VAL D 140 -1 O TYR D 138 N LYS D 85 SHEET 1 G 2 THR D 119 PHE D 120 0 SHEET 2 G 2 ALA D 123 PRO D 124 -1 O ALA D 123 N PHE D 120 SSBOND 1 CYS A 43 CYS A 80 1555 1555 2.16 SSBOND 2 CYS A 83 CYS A 145 1555 1555 2.01 SSBOND 3 CYS A 144 CYS A 153 1555 1555 2.09 SSBOND 4 CYS B 43 CYS B 80 1555 1555 2.86 SSBOND 5 CYS B 83 CYS B 145 1555 1555 2.03 SSBOND 6 CYS B 144 CYS B 153 1555 1555 2.05 SSBOND 7 CYS C 43 CYS C 80 1555 1555 2.13 SSBOND 8 CYS C 83 CYS C 145 1555 1555 2.04 SSBOND 9 CYS C 144 CYS C 153 1555 1555 2.10 SSBOND 10 CYS D 43 CYS D 80 1555 1555 2.20 SSBOND 11 CYS D 83 CYS D 145 1555 1555 2.07 SSBOND 12 CYS D 144 CYS D 153 1555 1555 2.03 CISPEP 1 PHE A 67 PRO A 68 0 6.93 CISPEP 2 PHE B 67 PRO B 68 0 5.24 CISPEP 3 PHE C 67 PRO C 68 0 -1.97 CISPEP 4 PHE D 67 PRO D 68 0 3.51 CRYST1 49.670 107.870 112.680 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008875 0.00000