data_3SUX # _entry.id 3SUX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SUX pdb_00003sux 10.2210/pdb3sux/pdb NDB NA1224 ? ? RCSB RCSB066682 ? ? WWPDB D_1000066682 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-14 2 'Structure model' 1 1 2012-03-14 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SUX _pdbx_database_status.recvd_initial_deposition_date 2011-07-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SUH 'The same RNA complexed with different ligand.' unspecified PDB 3SUY . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, L.' 1 'Serganov, A.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 14801 _citation.page_last 14806 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21873197 _citation.pdbx_database_id_DOI 10.1073/pnas.1111701108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Ishibe-Murakami, S.' 2 ? primary 'Patel, D.J.' 3 ? primary 'Serganov, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Riboswitch 32837.461 1 ? ? ? 'RNA (101-MER)' 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn '5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID' 473.439 1 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUUC ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 '5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID' THF 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 G n 1 7 A n 1 8 G n 1 9 U n 1 10 A n 1 11 G n 1 12 G n 1 13 U n 1 14 A n 1 15 A n 1 16 A n 1 17 C n 1 18 G n 1 19 U n 1 20 G n 1 21 C n 1 22 G n 1 23 U n 1 24 A n 1 25 A n 1 26 A n 1 27 G n 1 28 U n 1 29 G n 1 30 C n 1 31 C n 1 32 U n 1 33 G n 1 34 A n 1 35 G n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 G n 1 41 G n 1 42 G n 1 43 G n 1 44 A n 1 45 G n 1 46 U n 1 47 U n 1 48 G n 1 49 U n 1 50 C n 1 51 C n 1 52 U n 1 53 C n 1 54 A n 1 55 G n 1 56 G n 1 57 A n 1 58 C n 1 59 G n 1 60 A n 1 61 A n 1 62 C n 1 63 A n 1 64 C n 1 65 C n 1 66 G n 1 67 A n 1 68 A n 1 69 A n 1 70 G n 1 71 G n 1 72 U n 1 73 G n 1 74 G n 1 75 C n 1 76 G n 1 77 G n 1 78 U n 1 79 A n 1 80 C n 1 81 G n 1 82 U n 1 83 U n 1 84 U n 1 85 A n 1 86 C n 1 87 C n 1 88 G n 1 89 C n 1 90 A n 1 91 U n 1 92 C n 1 93 U n 1 94 C n 1 95 G n 1 96 C n 1 97 U n 1 98 G n 1 99 U n 1 100 U n 1 101 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Eubacterium siraeum V10Sc8a' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 717961 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 THF non-polymer . '5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID' ? 'C20 H23 N7 O7' 473.439 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 C 4 4 4 C C X . n A 1 5 A 5 5 5 A A X . n A 1 6 G 6 6 6 G G X . n A 1 7 A 7 7 7 A A X . n A 1 8 G 8 8 8 G G X . n A 1 9 U 9 9 9 U U X . n A 1 10 A 10 10 10 A A X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 U 13 13 13 U U X . n A 1 14 A 14 14 14 A A X . n A 1 15 A 15 15 15 A A X . n A 1 16 A 16 16 16 A A X . n A 1 17 C 17 17 17 C C X . n A 1 18 G 18 18 18 G G X . n A 1 19 U 19 19 19 U U X . n A 1 20 G 20 20 20 G G X . n A 1 21 C 21 21 21 C C X . n A 1 22 G 22 22 22 G G X . n A 1 23 U 23 23 23 U U X . n A 1 24 A 24 24 24 A A X . n A 1 25 A 25 25 25 A A X . n A 1 26 A 26 26 26 A A X . n A 1 27 G 27 27 27 G G X . n A 1 28 U 28 28 28 U U X . n A 1 29 G 29 29 29 G G X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 U 32 32 32 U U X . n A 1 33 G 33 33 33 G G X . n A 1 34 A 34 34 34 A A X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 G 37 37 37 G G X . n A 1 38 A 38 38 38 A A X . n A 1 39 C 39 39 39 C C X . n A 1 40 G 40 40 40 G G X . n A 1 41 G 41 41 41 G G X . n A 1 42 G 42 42 42 G G X . n A 1 43 G 43 43 43 G G X . n A 1 44 A 44 44 44 A A X . n A 1 45 G 45 45 45 G G X . n A 1 46 U 46 46 46 U U X . n A 1 47 U 47 47 47 U U X . n A 1 48 G 48 48 48 G G X . n A 1 49 U 49 49 49 U U X . n A 1 50 C 50 50 50 C C X . n A 1 51 C 51 51 51 C C X . n A 1 52 U 52 52 52 U U X . n A 1 53 C 53 53 53 C C X . n A 1 54 A 54 54 54 A A X . n A 1 55 G 55 55 55 G G X . n A 1 56 G 56 56 56 G G X . n A 1 57 A 57 57 57 A A X . n A 1 58 C 58 58 58 C C X . n A 1 59 G 59 59 59 G G X . n A 1 60 A 60 60 60 A A X . n A 1 61 A 61 61 61 A A X . n A 1 62 C 62 62 62 C C X . n A 1 63 A 63 63 63 A A X . n A 1 64 C 64 64 64 C C X . n A 1 65 C 65 65 65 C C X . n A 1 66 G 66 66 66 G G X . n A 1 67 A 67 67 67 A A X . n A 1 68 A 68 68 68 A A X . n A 1 69 A 69 69 69 A A X . n A 1 70 G 70 70 70 G G X . n A 1 71 G 71 71 71 G G X . n A 1 72 U 72 72 72 U U X . n A 1 73 G 73 73 73 G G X . n A 1 74 G 74 74 74 G G X . n A 1 75 C 75 75 75 C C X . n A 1 76 G 76 76 76 G G X . n A 1 77 G 77 77 77 G G X . n A 1 78 U 78 78 78 U U X . n A 1 79 A 79 79 79 A A X . n A 1 80 C 80 80 80 C C X . n A 1 81 G 81 81 81 G G X . n A 1 82 U 82 82 82 U U X . n A 1 83 U 83 83 83 U U X . n A 1 84 U 84 84 84 U U X . n A 1 85 A 85 85 85 A A X . n A 1 86 C 86 86 86 C C X . n A 1 87 C 87 87 87 C C X . n A 1 88 G 88 88 88 G G X . n A 1 89 C 89 89 89 C C X . n A 1 90 A 90 90 90 A A X . n A 1 91 U 91 91 91 U U X . n A 1 92 C 92 92 92 C C X . n A 1 93 U 93 93 93 U U X . n A 1 94 C 94 94 94 C C X . n A 1 95 G 95 95 95 G G X . n A 1 96 C 96 96 96 C C X . n A 1 97 U 97 97 97 U U X . n A 1 98 G 98 98 98 G G X . n A 1 99 U 99 99 99 U U X . n A 1 100 U 100 100 100 U U X . n A 1 101 CCC 101 101 101 CCC CCC X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 201 201 NA NA X . C 3 THF 1 103 103 THF THF X . D 4 HOH 1 102 1 HOH HOH X . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 X THF 103 ? N10 ? C THF 1 N10 2 1 N 1 X THF 103 ? C11 ? C THF 1 C11 3 1 N 1 X THF 103 ? C12 ? C THF 1 C12 4 1 N 1 X THF 103 ? C13 ? C THF 1 C13 5 1 N 1 X THF 103 ? C14 ? C THF 1 C14 6 1 N 1 X THF 103 ? C15 ? C THF 1 C15 7 1 N 1 X THF 103 ? C16 ? C THF 1 C16 8 1 N 1 X THF 103 ? C ? C THF 1 C 9 1 N 1 X THF 103 ? O ? C THF 1 O 10 1 N 1 X THF 103 ? N ? C THF 1 N 11 1 N 1 X THF 103 ? CA ? C THF 1 CA 12 1 N 1 X THF 103 ? CB ? C THF 1 CB 13 1 N 1 X THF 103 ? CG ? C THF 1 CG 14 1 N 1 X THF 103 ? CD ? C THF 1 CD 15 1 N 1 X THF 103 ? OE1 ? C THF 1 OE1 16 1 N 1 X THF 103 ? OE2 ? C THF 1 OE2 17 1 N 1 X THF 103 ? CT ? C THF 1 CT 18 1 N 1 X THF 103 ? O1 ? C THF 1 O1 19 1 N 1 X THF 103 ? O2 ? C THF 1 O2 20 1 N 1 X THF 103 ? CP1 ? C THF 1 CP1 21 1 N 1 X THF 103 ? O3 ? C THF 1 O3 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 REFMAC refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 REFMAC phasing . ? 5 # _cell.entry_id 3SUX _cell.length_a 126.173 _cell.length_b 126.173 _cell.length_c 149.222 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SUX _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3SUX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.48 _exptl_crystal.density_percent_sol 64.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;0.1 M Na-HEPES, pH 7.5, 4.2 M Na-formate, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-01-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3SUX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.90 _reflns.number_obs 10132 _reflns.number_all 10173 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.104 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.610 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_redundancy 8.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1008 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SUX _refine.ls_number_reflns_obs 9625 _refine.ls_number_reflns_all 9809 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 98.12 _refine.ls_R_factor_obs 0.18978 _refine.ls_R_factor_all 0.18978 _refine.ls_R_factor_R_work 0.18786 _refine.ls_R_factor_R_free 0.23230 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 488 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 93.146 _refine.aniso_B[1][1] 3.34 _refine.aniso_B[2][2] 3.34 _refine.aniso_B[3][3] -5.00 _refine.aniso_B[1][2] 1.67 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.329 _refine.overall_SU_ML 0.244 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 13.212 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2176 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 2191 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.006 0.021 ? 2451 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.165 3.000 ? 3823 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.058 0.200 ? 505 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.012 0.020 ? 1076 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined 0.212 0.200 ? 917 ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.293 0.200 ? 1555 ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.175 0.200 ? 66 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined 0.212 0.200 ? 1 ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.194 0.200 ? 62 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.174 0.200 ? 19 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 2.684 3.000 ? 2920 ? 'X-RAY DIFFRACTION' r_scangle_it 3.096 4.500 ? 3823 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.900 _refine_ls_shell.d_res_low 2.974 _refine_ls_shell.number_reflns_R_work 562 _refine_ls_shell.R_factor_R_work 0.353 _refine_ls_shell.percent_reflns_obs 76.88 _refine_ls_shell.R_factor_R_free 0.317 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3SUX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3SUX _struct.title 'Crystal structure of THF riboswitch, bound with THF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SUX _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'three-way junction, pseudoknot, gene regulator, THF, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SUX _struct_ref.pdbx_db_accession 3SUX _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUUC ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3SUX _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3SUX _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4420 ? 2 MORE -17.4 ? 2 'SSA (A^2)' 31820 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 72.8460155145 0.0000000000 0.0000000000 -1.0000000000 99.4813333333 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 100 "O3'" ? ? ? 1_555 A CCC 101 P ? ? X U 100 X CCC 101 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? A A 10 N1 ? ? ? 1_555 A G 88 N1 ? ? X A 10 X G 88 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? A A 10 N6 ? ? ? 1_555 A G 88 O6 ? ? X A 10 X G 88 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 87 N3 ? ? X G 11 X C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 87 O2 ? ? X G 11 X C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 87 N4 ? ? X G 11 X C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 86 N3 ? ? X G 12 X C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 86 O2 ? ? X G 12 X C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 86 N4 ? ? X G 12 X C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 85 N1 ? ? X U 13 X A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 85 N6 ? ? X U 13 X A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 84 N3 ? ? X A 14 X U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 84 O4 ? ? X A 14 X U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 83 N3 ? ? X A 15 X U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 83 O4 ? ? X A 15 X U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 82 N3 ? ? X A 16 X U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 82 O4 ? ? X A 16 X U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 81 N1 ? ? X C 17 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 81 O6 ? ? X C 17 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 81 N2 ? ? X C 17 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 80 N3 ? ? X G 18 X C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 80 O2 ? ? X G 18 X C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 80 N4 ? ? X G 18 X C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 79 N1 ? ? X U 19 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 79 N6 ? ? X U 19 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 20 N1 ? ? ? 1_555 A U 78 O2 ? ? X G 20 X U 78 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 20 O6 ? ? ? 1_555 A U 78 N3 ? ? X G 20 X U 78 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 76 N1 ? ? X C 21 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 76 O6 ? ? X C 21 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 76 N2 ? ? X C 21 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 22 N2 ? ? ? 1_555 A A 25 N1 ? ? X G 22 X A 25 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 75 N3 ? ? X G 22 X C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 75 O2 ? ? X G 22 X C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 75 N4 ? ? X G 22 X C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 23 N3 ? ? ? 1_555 A G 74 O6 ? ? X U 23 X G 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 23 O2 ? ? ? 1_555 A G 74 N1 ? ? X U 23 X G 74 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A A 26 N6 ? ? ? 1_555 A A 60 N1 ? ? X A 26 X A 60 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog37 hydrog ? ? A A 26 N7 ? ? ? 1_555 A A 60 N6 ? ? X A 26 X A 60 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog38 hydrog ? ? A A 26 N1 ? ? ? 1_555 A G 76 N2 ? ? X A 26 X G 76 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 27 O6 ? ? ? 1_555 A G 59 N1 ? ? X G 27 X G 59 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog40 hydrog ? ? A G 29 N1 ? ? ? 1_555 A A 57 N1 ? ? X G 29 X A 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog41 hydrog ? ? A G 29 O6 ? ? ? 1_555 A A 57 N6 ? ? X G 29 X A 57 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 56 N1 ? ? X C 30 X G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 56 O6 ? ? X C 30 X G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 56 N2 ? ? X C 30 X G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 55 N1 ? ? X C 31 X G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 55 O6 ? ? X C 31 X G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 55 N2 ? ? X C 31 X G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 54 N1 ? ? X U 32 X A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 54 N6 ? ? X U 32 X A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 53 N3 ? ? X G 33 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 53 O2 ? ? X G 33 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 53 N4 ? ? X G 33 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 34 N1 ? ? ? 1_555 A U 52 N3 ? ? X A 34 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 34 N6 ? ? ? 1_555 A U 52 O4 ? ? X A 34 X U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 51 N3 ? ? X G 35 X C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 51 O2 ? ? X G 35 X C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 51 N4 ? ? X G 35 X C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 50 N3 ? ? X G 36 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 50 O2 ? ? X G 36 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 50 N4 ? ? X G 36 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 37 N1 ? ? ? 1_555 A U 49 O2 ? ? X G 37 X U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A G 37 O6 ? ? ? 1_555 A U 49 N3 ? ? X G 37 X U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 47 N3 ? ? X A 38 X U 47 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog64 hydrog ? ? A C 39 N3 ? ? ? 1_555 A U 46 N3 ? ? X C 39 X U 46 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog65 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 94 N3 ? ? X G 41 X C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 94 O2 ? ? X G 41 X C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 94 N4 ? ? X G 41 X C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 42 N1 ? ? ? 1_555 A U 93 O2 ? ? X G 42 X U 93 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A G 42 O6 ? ? ? 1_555 A U 93 N3 ? ? X G 42 X U 93 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 92 N3 ? ? X G 43 X C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 92 O2 ? ? X G 43 X C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 92 N4 ? ? X G 43 X C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 91 O4 ? ? X A 44 X U 91 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog74 hydrog ? ? A A 61 N3 ? ? ? 1_555 A G 74 N2 ? ? X A 61 X G 74 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog75 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 73 N1 ? ? X C 62 X G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 73 O6 ? ? X C 62 X G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 73 N2 ? ? X C 62 X G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 63 N1 ? ? ? 1_555 A U 72 N3 ? ? X A 63 X U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 63 N6 ? ? ? 1_555 A U 72 O4 ? ? X A 63 X U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 64 N3 ? ? ? 1_555 A G 71 N1 ? ? X C 64 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 64 N4 ? ? ? 1_555 A G 71 O6 ? ? X C 64 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 64 O2 ? ? ? 1_555 A G 71 N2 ? ? X C 64 X G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 65 N3 ? ? ? 1_555 A G 70 N1 ? ? X C 65 X G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 65 N4 ? ? ? 1_555 A G 70 O6 ? ? X C 65 X G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 65 O2 ? ? ? 1_555 A G 70 N2 ? ? X C 65 X G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 66 N2 ? ? ? 1_555 A A 69 N7 ? ? X G 66 X A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X NA 201 ? 2 'BINDING SITE FOR RESIDUE NA X 201' AC2 Software X THF 103 ? 5 'BINDING SITE FOR RESIDUE THF X 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 76 ? G X 76 . ? 1_555 ? 2 AC1 2 U A 78 ? U X 78 . ? 1_555 ? 3 AC2 5 U A 28 ? U X 28 . ? 1_555 ? 4 AC2 5 G A 29 ? G X 29 . ? 1_555 ? 5 AC2 5 C A 58 ? C X 58 . ? 1_555 ? 6 AC2 5 G A 59 ? G X 59 . ? 1_555 ? 7 AC2 5 G A 77 ? G X 77 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" X A 90 ? ? "C1'" X A 90 ? ? N9 X A 90 ? ? 113.27 108.50 4.77 0.70 N 2 1 "C3'" X A 90 ? ? "O3'" X A 90 ? ? P X U 91 ? ? 127.64 119.70 7.94 1.20 Y # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CCC _pdbx_struct_mod_residue.label_seq_id 101 _pdbx_struct_mod_residue.auth_asym_id X _pdbx_struct_mod_residue.auth_comp_id CCC _pdbx_struct_mod_residue.auth_seq_id 101 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id C _pdbx_struct_mod_residue.details ? # _pdbx_entry_details.entry_id 3SUX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE DATABASE REFERENCE CLOSEST TO THE CRYSTALLIZED SEQUENCE IS GB 291556121 (NUCLEOTIDES RANGE: 95183-95281). TO FACILITATE CRYSTALLIZATION, NONCANONICAL BASE PAIRS WERE CONVERTED TO THEIR WATSON CRICK COUNTERPARTS BY U14A, U65C, AND U85A MUTATIONS. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 HOH O O N N 148 HOH H1 H N N 149 HOH H2 H N N 150 NA NA NA N N 151 THF N1 N Y N 152 THF C2 C Y N 153 THF NA2 N N N 154 THF N3 N Y N 155 THF C4 C Y N 156 THF O4 O N N 157 THF C4A C Y N 158 THF N5 N N N 159 THF C6 C N S 160 THF C7 C N N 161 THF N8 N N N 162 THF C8A C Y N 163 THF C9 C N N 164 THF N10 N N N 165 THF C11 C Y N 166 THF C12 C Y N 167 THF C13 C Y N 168 THF C14 C Y N 169 THF C15 C Y N 170 THF C16 C Y N 171 THF C C N N 172 THF O O N N 173 THF N N N N 174 THF CA C N S 175 THF CB C N N 176 THF CG C N N 177 THF CD C N N 178 THF OE1 O N N 179 THF OE2 O N N 180 THF CT C N N 181 THF O1 O N N 182 THF O2 O N N 183 THF CP1 C N N 184 THF O3 O N N 185 THF HN1 H N N 186 THF HN21 H N N 187 THF HN22 H N N 188 THF H6 H N N 189 THF H7 H N N 190 THF H91 H N N 191 THF H92 H N N 192 THF HN0 H N N 193 THF H12 H N N 194 THF H13 H N N 195 THF H15 H N N 196 THF H16 H N N 197 THF HN H N N 198 THF HA H N N 199 THF HB1 H N N 200 THF HB2 H N N 201 THF HG1 H N N 202 THF HG2 H N N 203 THF HOE2 H N N 204 THF HO2 H N N 205 THF HCP1 H N N 206 THF HCP2 H N N 207 THF HO3 H N N 208 U OP3 O N N 209 U P P N N 210 U OP1 O N N 211 U OP2 O N N 212 U "O5'" O N N 213 U "C5'" C N N 214 U "C4'" C N R 215 U "O4'" O N N 216 U "C3'" C N S 217 U "O3'" O N N 218 U "C2'" C N R 219 U "O2'" O N N 220 U "C1'" C N R 221 U N1 N N N 222 U C2 C N N 223 U O2 O N N 224 U N3 N N N 225 U C4 C N N 226 U O4 O N N 227 U C5 C N N 228 U C6 C N N 229 U HOP3 H N N 230 U HOP2 H N N 231 U "H5'" H N N 232 U "H5''" H N N 233 U "H4'" H N N 234 U "H3'" H N N 235 U "HO3'" H N N 236 U "H2'" H N N 237 U "HO2'" H N N 238 U "H1'" H N N 239 U H3 H N N 240 U H5 H N N 241 U H6 H N N 242 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 THF N1 C2 sing Y N 157 THF N1 C8A sing Y N 158 THF N1 HN1 sing N N 159 THF C2 NA2 sing N N 160 THF C2 N3 doub Y N 161 THF NA2 HN21 sing N N 162 THF NA2 HN22 sing N N 163 THF N3 C4 sing Y N 164 THF C4 O4 doub N N 165 THF C4 C4A sing Y N 166 THF C4A N5 sing N N 167 THF C4A C8A doub Y N 168 THF N5 C6 sing N N 169 THF N5 CP1 sing N N 170 THF C6 C7 sing N N 171 THF C6 C9 sing N N 172 THF C6 H6 sing N N 173 THF C7 N8 doub N N 174 THF C7 H7 sing N N 175 THF N8 C8A sing N N 176 THF C9 N10 sing N N 177 THF C9 H91 sing N N 178 THF C9 H92 sing N N 179 THF N10 C14 sing N N 180 THF N10 HN0 sing N N 181 THF C11 C12 doub Y N 182 THF C11 C16 sing Y N 183 THF C11 C sing N N 184 THF C12 C13 sing Y N 185 THF C12 H12 sing N N 186 THF C13 C14 doub Y N 187 THF C13 H13 sing N N 188 THF C14 C15 sing Y N 189 THF C15 C16 doub Y N 190 THF C15 H15 sing N N 191 THF C16 H16 sing N N 192 THF C O doub N N 193 THF C N sing N N 194 THF N CA sing N N 195 THF N HN sing N N 196 THF CA CB sing N N 197 THF CA CT sing N N 198 THF CA HA sing N N 199 THF CB CG sing N N 200 THF CB HB1 sing N N 201 THF CB HB2 sing N N 202 THF CG CD sing N N 203 THF CG HG1 sing N N 204 THF CG HG2 sing N N 205 THF CD OE1 doub N N 206 THF CD OE2 sing N N 207 THF OE2 HOE2 sing N N 208 THF CT O1 doub N N 209 THF CT O2 sing N N 210 THF O2 HO2 sing N N 211 THF CP1 O3 sing N N 212 THF CP1 HCP1 sing N N 213 THF CP1 HCP2 sing N N 214 THF O3 HO3 sing N N 215 U OP3 P sing N N 216 U OP3 HOP3 sing N N 217 U P OP1 doub N N 218 U P OP2 sing N N 219 U P "O5'" sing N N 220 U OP2 HOP2 sing N N 221 U "O5'" "C5'" sing N N 222 U "C5'" "C4'" sing N N 223 U "C5'" "H5'" sing N N 224 U "C5'" "H5''" sing N N 225 U "C4'" "O4'" sing N N 226 U "C4'" "C3'" sing N N 227 U "C4'" "H4'" sing N N 228 U "O4'" "C1'" sing N N 229 U "C3'" "O3'" sing N N 230 U "C3'" "C2'" sing N N 231 U "C3'" "H3'" sing N N 232 U "O3'" "HO3'" sing N N 233 U "C2'" "O2'" sing N N 234 U "C2'" "C1'" sing N N 235 U "C2'" "H2'" sing N N 236 U "O2'" "HO2'" sing N N 237 U "C1'" N1 sing N N 238 U "C1'" "H1'" sing N N 239 U N1 C2 sing N N 240 U N1 C6 sing N N 241 U C2 O2 doub N N 242 U C2 N3 sing N N 243 U N3 C4 sing N N 244 U N3 H3 sing N N 245 U C4 O4 doub N N 246 U C4 C5 sing N N 247 U C5 C6 doub N N 248 U C5 H5 sing N N 249 U C6 H6 sing N N 250 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SUX 'double helix' 3SUX 'a-form double helix' 3SUX 'bulge loop' 3SUX 'mismatched base pair' 3SUX 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 10 1_555 A G 88 1_555 0.056 1.514 0.005 5.819 3.009 -20.251 1 X_A10:G88_X X 10 ? X 88 ? 8 1 1 A G 11 1_555 A C 87 1_555 -0.467 -0.111 0.328 6.720 -8.910 -0.950 2 X_G11:C87_X X 11 ? X 87 ? 19 1 1 A G 12 1_555 A C 86 1_555 -0.565 -0.243 -0.313 -11.065 -17.677 1.172 3 X_G12:C86_X X 12 ? X 86 ? 19 1 1 A U 13 1_555 A A 85 1_555 0.303 -0.249 0.235 -6.085 -12.585 -1.802 4 X_U13:A85_X X 13 ? X 85 ? 20 1 1 A A 14 1_555 A U 84 1_555 -0.369 -0.300 0.262 -3.382 -12.240 3.398 5 X_A14:U84_X X 14 ? X 84 ? 20 1 1 A A 15 1_555 A U 83 1_555 0.030 -0.173 0.222 9.262 -14.318 1.399 6 X_A15:U83_X X 15 ? X 83 ? 20 1 1 A A 16 1_555 A U 82 1_555 0.172 -0.282 -0.328 -3.211 -17.880 0.246 7 X_A16:U82_X X 16 ? X 82 ? 20 1 1 A C 17 1_555 A G 81 1_555 0.151 -0.094 0.192 -1.373 -15.387 2.706 8 X_C17:G81_X X 17 ? X 81 ? 19 1 1 A G 18 1_555 A C 80 1_555 0.236 -0.160 -0.066 -9.833 -5.121 -2.251 9 X_G18:C80_X X 18 ? X 80 ? 19 1 1 A U 19 1_555 A A 79 1_555 0.277 -0.204 0.410 -1.399 0.473 4.501 10 X_U19:A79_X X 19 ? X 79 ? 20 1 1 A G 20 1_555 A U 78 1_555 -2.611 -0.628 -0.402 -3.606 -11.417 4.370 11 X_G20:U78_X X 20 ? X 78 ? 28 1 1 A C 21 1_555 A G 76 1_555 -0.385 -0.264 0.248 -2.035 -9.485 -0.945 12 X_C21:G76_X X 21 ? X 76 ? 19 1 1 A G 22 1_555 A C 75 1_555 0.123 -0.355 0.161 -2.935 -20.508 -1.588 13 X_G22:C75_X X 22 ? X 75 ? 19 1 1 A U 23 1_555 A G 74 1_555 2.232 -0.669 -0.051 -0.600 -9.237 -13.274 14 X_U23:G74_X X 23 ? X 74 ? 28 1 1 A C 62 1_555 A G 73 1_555 -0.043 -0.218 0.251 -5.439 2.042 3.795 15 X_C62:G73_X X 62 ? X 73 ? 19 1 1 A A 63 1_555 A U 72 1_555 -0.210 -0.110 0.028 11.988 -2.710 -3.606 16 X_A63:U72_X X 63 ? X 72 ? 20 1 1 A C 64 1_555 A G 71 1_555 0.176 -0.187 -0.395 9.384 -10.276 0.440 17 X_C64:G71_X X 64 ? X 71 ? 19 1 1 A C 65 1_555 A G 70 1_555 0.242 -0.206 -0.043 7.758 0.296 -4.558 18 X_C65:G70_X X 65 ? X 70 ? 19 1 1 A G 66 1_555 A A 69 1_555 7.729 -5.308 0.588 16.572 -14.506 -45.039 19 X_G66:A69_X X 66 ? X 69 ? ? ? 1 A A 26 1_555 A A 60 1_555 -4.047 1.607 -0.501 -14.428 -7.577 -115.585 20 X_A26:A60_X X 26 ? X 60 ? 5 4 1 A G 27 1_555 A G 59 1_555 -4.061 1.156 -0.012 11.082 -6.845 -54.743 21 X_G27:G59_X X 27 ? X 59 ? ? 1 1 A G 29 1_555 A A 57 1_555 0.637 1.433 -0.407 17.036 -11.321 -19.010 22 X_G29:A57_X X 29 ? X 57 ? 8 1 1 A C 30 1_555 A G 56 1_555 0.111 -0.328 -0.316 16.139 -17.546 -1.010 23 X_C30:G56_X X 30 ? X 56 ? 19 1 1 A C 31 1_555 A G 55 1_555 0.307 -0.151 -0.152 11.502 -12.337 2.892 24 X_C31:G55_X X 31 ? X 55 ? 19 1 1 A U 32 1_555 A A 54 1_555 0.099 0.031 -0.024 0.838 -12.518 6.863 25 X_U32:A54_X X 32 ? X 54 ? 20 1 1 A G 33 1_555 A C 53 1_555 -0.032 -0.140 0.094 -0.633 -9.750 1.808 26 X_G33:C53_X X 33 ? X 53 ? 19 1 1 A A 34 1_555 A U 52 1_555 0.361 -0.140 0.101 -4.653 -6.130 7.660 27 X_A34:U52_X X 34 ? X 52 ? 20 1 1 A G 35 1_555 A C 51 1_555 0.287 -0.254 -0.248 -9.697 -9.056 1.799 28 X_G35:C51_X X 35 ? X 51 ? 19 1 1 A G 36 1_555 A C 50 1_555 0.135 -0.465 -0.229 -11.057 -6.526 -3.878 29 X_G36:C50_X X 36 ? X 50 ? 19 1 1 A G 37 1_555 A U 49 1_555 -2.125 -0.607 -0.061 -10.212 -16.460 -5.813 30 X_G37:U49_X X 37 ? X 49 ? 28 1 1 A A 38 1_555 A U 47 1_555 -0.928 0.033 -1.547 7.382 3.944 12.748 31 X_A38:U47_X X 38 ? X 47 ? ? 1 1 A C 39 1_555 A U 46 1_555 -0.259 -1.230 -0.525 -0.839 -1.341 26.783 32 X_C39:U46_X X 39 ? X 46 ? ? ? 1 A G 41 1_555 A C 94 1_555 -0.595 -0.202 0.787 15.048 0.752 -1.152 33 X_G41:C94_X X 41 ? X 94 ? 19 1 1 A G 42 1_555 A U 93 1_555 -2.154 -0.561 -0.211 -6.551 -17.180 5.438 34 X_G42:U93_X X 42 ? X 93 ? 28 1 1 A G 43 1_555 A C 92 1_555 -0.123 -0.213 0.310 -7.765 -5.064 2.649 35 X_G43:C92_X X 43 ? X 92 ? 19 1 1 A A 44 1_555 A U 91 1_555 1.076 0.512 -0.679 -23.977 -10.078 -16.173 36 X_A44:U91_X X 44 ? X 91 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 10 1_555 A G 88 1_555 A G 11 1_555 A C 87 1_555 1.075 -2.523 3.130 -7.575 2.787 31.134 -5.001 -3.145 2.574 5.086 13.824 32.138 1 XX_A10G11:C87G88_XX X 10 ? X 88 ? X 11 ? X 87 ? 1 A G 11 1_555 A C 87 1_555 A G 12 1_555 A C 86 1_555 0.116 -2.054 3.611 3.933 10.181 32.098 -5.191 0.444 2.840 17.783 -6.869 33.856 2 XX_G11G12:C86C87_XX X 11 ? X 87 ? X 12 ? X 86 ? 1 A G 12 1_555 A C 86 1_555 A U 13 1_555 A A 85 1_555 -0.179 -1.574 3.140 -4.616 -0.325 37.038 -2.419 -0.309 3.152 -0.510 7.232 37.316 3 XX_G12U13:A85C86_XX X 12 ? X 86 ? X 13 ? X 85 ? 1 A U 13 1_555 A A 85 1_555 A A 14 1_555 A U 84 1_555 0.437 -1.674 3.133 3.139 6.511 24.828 -5.377 -0.190 2.649 14.748 -7.111 25.843 4 XX_U13A14:U84A85_XX X 13 ? X 85 ? X 14 ? X 84 ? 1 A A 14 1_555 A U 84 1_555 A A 15 1_555 A U 83 1_555 -0.044 -1.116 2.908 1.392 2.988 33.660 -2.340 0.272 2.798 5.144 -2.396 33.816 5 XX_A14A15:U83U84_XX X 14 ? X 84 ? X 15 ? X 83 ? 1 A A 15 1_555 A U 83 1_555 A A 16 1_555 A U 82 1_555 -0.264 -1.365 3.632 4.458 8.822 33.897 -3.634 1.133 3.131 14.746 -7.452 35.269 6 XX_A15A16:U82U83_XX X 15 ? X 83 ? X 16 ? X 82 ? 1 A A 16 1_555 A U 82 1_555 A C 17 1_555 A G 81 1_555 0.451 -1.363 3.072 -2.432 7.825 33.540 -3.377 -1.095 2.658 13.314 4.138 34.499 7 XX_A16C17:G81U82_XX X 16 ? X 82 ? X 17 ? X 81 ? 1 A C 17 1_555 A G 81 1_555 A G 18 1_555 A C 80 1_555 0.222 -1.896 3.364 3.388 11.216 31.470 -5.015 0.137 2.567 19.838 -5.992 33.528 8 XX_C17G18:C80G81_XX X 17 ? X 81 ? X 18 ? X 80 ? 1 A G 18 1_555 A C 80 1_555 A U 19 1_555 A A 79 1_555 0.343 -1.554 3.140 -2.449 4.613 27.904 -4.145 -1.217 2.811 9.462 5.022 28.379 9 XX_G18U19:A79C80_XX X 18 ? X 80 ? X 19 ? X 79 ? 1 A U 19 1_555 A A 79 1_555 A G 20 1_555 A U 78 1_555 1.634 -2.740 3.367 5.848 4.929 17.079 -11.055 -1.918 2.867 15.618 -18.531 18.701 10 XX_U19G20:U78A79_XX X 19 ? X 79 ? X 20 ? X 78 ? 1 A G 20 1_555 A U 78 1_555 A C 21 1_555 A G 76 1_555 -0.255 -1.574 3.295 -7.161 0.253 43.944 -2.102 -0.332 3.287 0.335 9.494 44.496 11 XX_G20C21:G76U78_XX X 20 ? X 78 ? X 21 ? X 76 ? 1 A C 21 1_555 A G 76 1_555 A G 22 1_555 A C 75 1_555 -0.200 -1.616 3.039 -0.398 16.822 37.484 -3.840 0.249 2.153 24.711 0.584 40.963 12 XX_C21G22:C75G76_XX X 21 ? X 76 ? X 22 ? X 75 ? 1 A G 22 1_555 A C 75 1_555 A U 23 1_555 A G 74 1_555 -0.457 -1.057 3.058 2.279 4.120 44.578 -1.730 0.789 2.928 5.413 -2.994 44.814 13 XX_G22U23:G74C75_XX X 22 ? X 75 ? X 23 ? X 74 ? 1 A U 23 1_555 A G 74 1_555 A C 62 1_555 A G 73 1_555 -1.708 -1.998 3.233 -2.519 6.024 32.998 -4.394 2.560 2.951 10.477 4.382 33.620 14 XX_U23C62:G73G74_XX X 23 ? X 74 ? X 62 ? X 73 ? 1 A C 62 1_555 A G 73 1_555 A A 63 1_555 A U 72 1_555 -0.815 -1.250 2.758 -0.654 6.924 29.943 -3.452 1.435 2.431 13.178 1.245 30.722 15 XX_C62A63:U72G73_XX X 62 ? X 73 ? X 63 ? X 72 ? 1 A A 63 1_555 A U 72 1_555 A C 64 1_555 A G 71 1_555 0.332 -1.137 3.341 2.583 13.941 34.793 -3.529 -0.190 2.721 22.208 -4.115 37.488 16 XX_A63C64:G71U72_XX X 63 ? X 72 ? X 64 ? X 71 ? 1 A C 64 1_555 A G 71 1_555 A C 65 1_555 A G 70 1_555 -0.228 -1.822 3.343 -2.290 14.903 32.862 -4.869 0.072 2.336 24.783 3.808 36.069 17 XX_C64C65:G70G71_XX X 64 ? X 71 ? X 65 ? X 70 ? 1 A C 65 1_555 A G 70 1_555 A G 66 1_555 A A 69 1_555 -3.304 -1.911 3.432 3.963 16.869 56.410 -2.769 3.559 2.597 17.396 -4.087 58.802 18 XX_C65G66:A69G70_XX X 65 ? X 70 ? X 66 ? X 69 ? 1 A A 26 1_555 A A 60 1_555 A G 27 1_555 A G 59 1_555 2.541 -1.944 3.051 -8.502 2.935 33.376 -3.645 -5.352 2.183 4.999 14.480 34.534 19 XX_A26G27:G59A60_XX X 26 ? X 60 ? X 27 ? X 59 ? 1 A G 29 1_555 A A 57 1_555 A C 30 1_555 A G 56 1_555 1.239 -1.672 3.058 -1.099 5.834 31.065 -4.023 -2.454 2.664 10.771 2.030 31.613 20 XX_G29C30:G56A57_XX X 29 ? X 57 ? X 30 ? X 56 ? 1 A C 30 1_555 A G 56 1_555 A C 31 1_555 A G 55 1_555 0.021 -1.643 3.402 -0.279 9.887 36.440 -3.791 -0.068 2.875 15.463 0.437 37.714 21 XX_C30C31:G55G56_XX X 30 ? X 56 ? X 31 ? X 55 ? 1 A C 31 1_555 A G 55 1_555 A U 32 1_555 A A 54 1_555 0.309 -1.687 3.449 1.516 13.241 31.399 -4.903 -0.296 2.562 23.201 -2.656 34.045 22 XX_C31U32:A54G55_XX X 31 ? X 55 ? X 32 ? X 54 ? 1 A U 32 1_555 A A 54 1_555 A G 33 1_555 A C 53 1_555 -0.175 -1.703 3.120 -0.129 10.834 29.764 -4.859 0.301 2.371 20.265 0.241 31.633 23 XX_U32G33:C53A54_XX X 32 ? X 54 ? X 33 ? X 53 ? 1 A G 33 1_555 A C 53 1_555 A A 34 1_555 A U 52 1_555 0.615 -1.500 3.321 1.067 6.594 32.608 -3.692 -0.901 2.987 11.592 -1.875 33.267 24 XX_G33A34:U52C53_XX X 33 ? X 53 ? X 34 ? X 52 ? 1 A A 34 1_555 A U 52 1_555 A G 35 1_555 A C 51 1_555 -0.261 -1.699 3.366 5.035 7.137 32.237 -4.107 1.264 2.862 12.567 -8.867 33.368 25 XX_A34G35:C51U52_XX X 34 ? X 52 ? X 35 ? X 51 ? 1 A G 35 1_555 A C 51 1_555 A G 36 1_555 A C 50 1_555 0.321 -2.046 3.430 1.135 3.902 27.725 -5.155 -0.393 3.128 8.088 -2.352 28.015 26 XX_G35G36:C50C51_XX X 35 ? X 51 ? X 36 ? X 50 ? 1 A G 36 1_555 A C 50 1_555 A G 37 1_555 A U 49 1_555 0.265 -2.067 3.033 -1.213 8.521 24.314 -6.591 -0.872 2.179 19.467 2.772 25.771 27 XX_G36G37:U49C50_XX X 36 ? X 50 ? X 37 ? X 49 ? 1 A G 37 1_555 A U 49 1_555 A A 38 1_555 A U 47 1_555 1.271 -0.935 4.264 -11.680 -2.744 39.738 -0.951 -3.371 3.812 -3.929 16.726 41.440 28 XX_G37A38:U47U49_XX X 37 ? X 49 ? X 38 ? X 47 ? 1 A A 38 1_555 A U 47 1_555 A C 39 1_555 A U 46 1_555 0.596 -1.763 3.785 -9.052 19.380 31.947 -5.121 -2.045 2.169 31.222 14.583 38.291 29 XX_A38C39:U46U47_XX X 38 ? X 47 ? X 39 ? X 46 ? 1 A G 41 1_555 A C 94 1_555 A G 42 1_555 A U 93 1_555 0.005 -2.223 3.316 2.295 14.847 34.202 -5.214 0.260 2.193 23.868 -3.689 37.266 30 XX_G41G42:U93C94_XX X 41 ? X 94 ? X 42 ? X 93 ? 1 A G 42 1_555 A U 93 1_555 A G 43 1_555 A C 92 1_555 -0.243 -1.839 3.106 -5.074 7.610 40.445 -3.336 -0.147 2.741 10.840 7.228 41.424 31 XX_G42G43:C92U93_XX X 42 ? X 93 ? X 43 ? X 92 ? 1 A G 43 1_555 A C 92 1_555 A A 44 1_555 A U 91 1_555 -0.613 -1.987 3.784 7.517 5.514 38.587 -3.637 1.869 3.308 8.199 -11.178 39.655 32 XX_G43A44:U91C92_XX X 43 ? X 92 ? X 44 ? X 91 ? # _atom_sites.entry_id 3SUX _atom_sites.fract_transf_matrix[1][1] 0.007926 _atom_sites.fract_transf_matrix[1][2] 0.004576 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009152 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006701 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P # loop_