HEADER PROTEIN BINDING 12-JUL-11 3SV1 TITLE CRYSTAL STRUCTURE OF APP PEPTIDE BOUND RAT MINT2 PARM COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY A MEMBER COMPND 3 2; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: PTB AND ARM DOMAINS, RESIDUES 365-552; COMPND 6 SYNONYM: ADAPTER PROTEIN X11BETA, NEURON-SPECIFIC X11L PROTEIN, COMPND 7 NEURONAL MUNC18-1-INTERACTING PROTEIN 2, MINT-2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 11 CHAIN: D, E, F; COMPND 12 FRAGMENT: C-TERMINAL PEPTIDE, RESIDUES 754-767; COMPND 13 SYNONYM: APP; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: MINT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS APP BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHEN,J.LONG,X.YAN,X.XIE REVDAT 4 01-NOV-23 3SV1 1 SEQADV REVDAT 3 08-NOV-17 3SV1 1 REMARK REVDAT 2 19-JUN-13 3SV1 1 JRNL REVDAT 1 11-JUL-12 3SV1 0 JRNL AUTH X.XIE,X.YAN,Z.WANG,H.ZHOU,W.DIAO,W.ZHOU,J.LONG,Y.SHEN JRNL TITL OPEN-CLOSED MOTION OF MINT2 REGULATES APP METABOLISM JRNL REF J MOL CELL BIOL V. 5 48 2013 JRNL REFN ISSN 1674-2788 JRNL PMID 22730553 JRNL DOI 10.1093/JMCB/MJS033 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 79842.630 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 10867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 563 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1492 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 70 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3687 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -25.96000 REMARK 3 B22 (A**2) : 14.47000 REMARK 3 B33 (A**2) : 11.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.56 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 10.780; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 16.870; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 25.000; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 24.540; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 119.4 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3SV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10867 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SUZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 36% PEG200, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.55950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.04600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.55950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.04600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 ASP A 423 REMARK 465 ALA A 424 REMARK 465 MET A 476 REMARK 465 PRO A 477 REMARK 465 ARG A 478 REMARK 465 SER A 479 REMARK 465 ALA A 480 REMARK 465 SER A 481 REMARK 465 GLN A 482 REMARK 465 ASP A 483 REMARK 465 CYS A 484 REMARK 465 ILE A 485 REMARK 465 GLU A 486 REMARK 465 THR A 487 REMARK 465 THR A 488 REMARK 465 PRO A 489 REMARK 465 GLY A 490 REMARK 465 ALA A 491 REMARK 465 GLN A 492 REMARK 465 GLU A 493 REMARK 465 GLY A 494 REMARK 465 LYS A 495 REMARK 465 LYS A 496 REMARK 465 GLN A 497 REMARK 465 SER B 420 REMARK 465 GLU B 421 REMARK 465 GLY B 422 REMARK 465 ASP B 423 REMARK 465 ALA B 424 REMARK 465 ARG B 475 REMARK 465 MET B 476 REMARK 465 PRO B 477 REMARK 465 ARG B 478 REMARK 465 SER B 479 REMARK 465 ALA B 480 REMARK 465 SER B 481 REMARK 465 GLN B 482 REMARK 465 ASP B 483 REMARK 465 CYS B 484 REMARK 465 ILE B 485 REMARK 465 GLU B 486 REMARK 465 THR B 487 REMARK 465 THR B 488 REMARK 465 PRO B 489 REMARK 465 GLY B 490 REMARK 465 ALA B 491 REMARK 465 GLN B 492 REMARK 465 GLU B 493 REMARK 465 GLY B 494 REMARK 465 LYS B 495 REMARK 465 ASN B 532 REMARK 465 GLY B 533 REMARK 465 ILE B 534 REMARK 465 ASN B 535 REMARK 465 PRO B 536 REMARK 465 GLU B 537 REMARK 465 ASP B 538 REMARK 465 LEU B 539 REMARK 465 SER B 540 REMARK 465 GLN B 541 REMARK 465 LYS B 542 REMARK 465 GLU B 543 REMARK 465 TYR B 544 REMARK 465 SER B 545 REMARK 465 ASP B 546 REMARK 465 ILE B 547 REMARK 465 ILE B 548 REMARK 465 ASN B 549 REMARK 465 THR B 550 REMARK 465 GLN B 551 REMARK 465 GLU B 552 REMARK 465 SER C 420 REMARK 465 GLU C 421 REMARK 465 GLY C 422 REMARK 465 ASP C 423 REMARK 465 ALA C 424 REMARK 465 ARG C 475 REMARK 465 MET C 476 REMARK 465 PRO C 477 REMARK 465 ARG C 478 REMARK 465 SER C 479 REMARK 465 ALA C 480 REMARK 465 SER C 481 REMARK 465 GLN C 482 REMARK 465 ASP C 483 REMARK 465 CYS C 484 REMARK 465 ILE C 485 REMARK 465 GLU C 486 REMARK 465 THR C 487 REMARK 465 THR C 488 REMARK 465 PRO C 489 REMARK 465 GLY C 490 REMARK 465 ALA C 491 REMARK 465 GLN C 492 REMARK 465 GLU C 493 REMARK 465 GLY C 494 REMARK 465 LYS C 495 REMARK 465 ASN C 532 REMARK 465 GLY C 533 REMARK 465 GLN C 541 REMARK 465 LYS C 542 REMARK 465 GLU C 543 REMARK 465 TYR C 544 REMARK 465 SER C 545 REMARK 465 ASP C 546 REMARK 465 ILE C 547 REMARK 465 ILE C 548 REMARK 465 ASN C 549 REMARK 465 THR C 550 REMARK 465 GLN C 551 REMARK 465 GLU C 552 REMARK 465 GLN E 754 REMARK 465 GLU E 766 REMARK 465 GLN E 767 REMARK 465 GLN F 754 REMARK 465 ASN F 755 REMARK 465 ASN F 759 REMARK 465 PRO F 760 REMARK 465 THR F 761 REMARK 465 TYR F 762 REMARK 465 LYS F 763 REMARK 465 PHE F 764 REMARK 465 PHE F 765 REMARK 465 GLU F 766 REMARK 465 GLN F 767 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 387 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 GLN A 425 CG CD OE1 NE2 REMARK 470 THR A 426 OG1 CG2 REMARK 470 LEU A 427 CG CD1 CD2 REMARK 470 ARG A 473 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 475 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 541 CG CD OE1 NE2 REMARK 470 TYR A 544 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 550 OG1 CG2 REMARK 470 GLN A 551 CG CD OE1 NE2 REMARK 470 ARG B 387 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 LYS B 415 CG CD CE NZ REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 GLN B 425 CG CD OE1 NE2 REMARK 470 THR B 426 OG1 CG2 REMARK 470 ARG B 473 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 528 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 387 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 391 CG CD CE NZ REMARK 470 ARG C 473 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 525 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE C 528 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 530 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 534 CG1 CG2 CD1 REMARK 470 ASN C 535 CG OD1 ND2 REMARK 470 PRO C 536 CG CD REMARK 470 GLU C 537 CG CD OE1 OE2 REMARK 470 ASP C 538 CG OD1 OD2 REMARK 470 LEU C 539 CG CD1 CD2 REMARK 470 SER C 540 OG REMARK 470 ASN E 755 CG OD1 ND2 REMARK 470 GLU E 758 CG CD OE1 OE2 REMARK 470 LYS E 763 CG CD CE NZ REMARK 470 TYR F 757 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU F 758 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR D 762 N PHE D 764 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 364 -25.76 -163.14 REMARK 500 SER A 380 -166.69 -126.55 REMARK 500 THR A 381 127.04 -172.91 REMARK 500 ARG A 387 122.73 -35.45 REMARK 500 ASN A 388 81.79 54.22 REMARK 500 PRO A 389 -99.93 -84.99 REMARK 500 SER A 390 132.78 175.10 REMARK 500 LYS A 391 -6.93 -49.09 REMARK 500 MET A 396 -71.62 -74.04 REMARK 500 ALA A 418 34.07 -71.56 REMARK 500 ASP A 445 -62.59 -109.09 REMARK 500 MET A 451 149.12 -176.57 REMARK 500 GLU A 508 5.97 -64.89 REMARK 500 GLN A 511 -71.99 -44.69 REMARK 500 PHE A 528 29.87 -62.78 REMARK 500 LEU A 529 -46.84 -144.02 REMARK 500 ILE A 534 37.42 -83.00 REMARK 500 PRO A 536 48.50 -76.42 REMARK 500 GLU A 543 -44.01 -141.30 REMARK 500 LEU B 367 -15.24 -46.80 REMARK 500 SER B 380 -159.65 -132.66 REMARK 500 THR B 381 129.56 171.33 REMARK 500 GLU B 386 -134.25 -77.84 REMARK 500 ASN B 388 78.75 173.75 REMARK 500 PRO B 389 -168.44 -66.39 REMARK 500 GLU B 400 -60.66 -93.41 REMARK 500 ALA B 401 -34.40 -35.51 REMARK 500 ALA B 418 45.31 -91.53 REMARK 500 GLN B 437 -46.64 -134.53 REMARK 500 ARG B 438 -155.73 -148.71 REMARK 500 ILE B 439 86.02 -165.49 REMARK 500 THR B 446 -4.65 -149.55 REMARK 500 GLN B 447 19.96 59.52 REMARK 500 SER B 459 32.41 -151.76 REMARK 500 TYR B 460 150.84 163.41 REMARK 500 MET B 471 108.62 -175.02 REMARK 500 TYR B 525 -78.93 -62.67 REMARK 500 ARG B 530 45.89 -73.47 REMARK 500 SER C 380 -165.90 -117.39 REMARK 500 THR C 381 142.89 -178.77 REMARK 500 ASN C 388 119.44 179.50 REMARK 500 ALA C 418 32.99 -82.96 REMARK 500 GLN C 447 3.22 82.25 REMARK 500 ASP C 452 102.07 -164.17 REMARK 500 LEU C 455 -13.63 -43.81 REMARK 500 SER C 459 16.57 -140.66 REMARK 500 TYR C 460 140.19 -175.60 REMARK 500 ASP C 463 46.14 -95.37 REMARK 500 ARG C 473 76.57 -101.10 REMARK 500 GLN C 497 19.98 90.25 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3SV1 A 365 552 UNP O35431 APBA2_RAT 365 552 DBREF 3SV1 B 365 552 UNP O35431 APBA2_RAT 365 552 DBREF 3SV1 C 365 552 UNP O35431 APBA2_RAT 365 552 DBREF 3SV1 D 754 767 UNP P05067 A4_HUMAN 754 767 DBREF 3SV1 E 754 767 UNP P05067 A4_HUMAN 754 767 DBREF 3SV1 F 754 767 UNP P05067 A4_HUMAN 754 767 SEQADV 3SV1 GLY A 363 UNP O35431 EXPRESSION TAG SEQADV 3SV1 SER A 364 UNP O35431 EXPRESSION TAG SEQADV 3SV1 GLY B 363 UNP O35431 EXPRESSION TAG SEQADV 3SV1 SER B 364 UNP O35431 EXPRESSION TAG SEQADV 3SV1 GLY C 363 UNP O35431 EXPRESSION TAG SEQADV 3SV1 SER C 364 UNP O35431 EXPRESSION TAG SEQRES 1 A 190 GLY SER GLU ASP LEU ILE ASP GLY ILE ILE PHE ALA ALA SEQRES 2 A 190 ASN TYR LEU GLY SER THR GLN LEU LEU SER GLU ARG ASN SEQRES 3 A 190 PRO SER LYS ASN ILE ARG MET MET GLN ALA GLN GLU ALA SEQRES 4 A 190 VAL SER ARG VAL LYS ARG MET GLN LYS ALA ALA LYS ILE SEQRES 5 A 190 LYS LYS LYS ALA ASN SER GLU GLY ASP ALA GLN THR LEU SEQRES 6 A 190 THR GLU VAL ASP LEU PHE ILE SER THR GLN ARG ILE LYS SEQRES 7 A 190 VAL LEU ASN ALA ASP THR GLN GLU THR MET MET ASP HIS SEQRES 8 A 190 ALA LEU ARG THR ILE SER TYR ILE ALA ASP ILE GLY ASN SEQRES 9 A 190 ILE VAL VAL LEU MET ALA ARG ARG ARG MET PRO ARG SER SEQRES 10 A 190 ALA SER GLN ASP CYS ILE GLU THR THR PRO GLY ALA GLN SEQRES 11 A 190 GLU GLY LYS LYS GLN TYR LYS MET ILE CYS HIS VAL PHE SEQRES 12 A 190 GLU SER GLU ASP ALA GLN LEU ILE ALA GLN SER ILE GLY SEQRES 13 A 190 GLN ALA PHE SER VAL ALA TYR GLN GLU PHE LEU ARG ALA SEQRES 14 A 190 ASN GLY ILE ASN PRO GLU ASP LEU SER GLN LYS GLU TYR SEQRES 15 A 190 SER ASP ILE ILE ASN THR GLN GLU SEQRES 1 B 190 GLY SER GLU ASP LEU ILE ASP GLY ILE ILE PHE ALA ALA SEQRES 2 B 190 ASN TYR LEU GLY SER THR GLN LEU LEU SER GLU ARG ASN SEQRES 3 B 190 PRO SER LYS ASN ILE ARG MET MET GLN ALA GLN GLU ALA SEQRES 4 B 190 VAL SER ARG VAL LYS ARG MET GLN LYS ALA ALA LYS ILE SEQRES 5 B 190 LYS LYS LYS ALA ASN SER GLU GLY ASP ALA GLN THR LEU SEQRES 6 B 190 THR GLU VAL ASP LEU PHE ILE SER THR GLN ARG ILE LYS SEQRES 7 B 190 VAL LEU ASN ALA ASP THR GLN GLU THR MET MET ASP HIS SEQRES 8 B 190 ALA LEU ARG THR ILE SER TYR ILE ALA ASP ILE GLY ASN SEQRES 9 B 190 ILE VAL VAL LEU MET ALA ARG ARG ARG MET PRO ARG SER SEQRES 10 B 190 ALA SER GLN ASP CYS ILE GLU THR THR PRO GLY ALA GLN SEQRES 11 B 190 GLU GLY LYS LYS GLN TYR LYS MET ILE CYS HIS VAL PHE SEQRES 12 B 190 GLU SER GLU ASP ALA GLN LEU ILE ALA GLN SER ILE GLY SEQRES 13 B 190 GLN ALA PHE SER VAL ALA TYR GLN GLU PHE LEU ARG ALA SEQRES 14 B 190 ASN GLY ILE ASN PRO GLU ASP LEU SER GLN LYS GLU TYR SEQRES 15 B 190 SER ASP ILE ILE ASN THR GLN GLU SEQRES 1 C 190 GLY SER GLU ASP LEU ILE ASP GLY ILE ILE PHE ALA ALA SEQRES 2 C 190 ASN TYR LEU GLY SER THR GLN LEU LEU SER GLU ARG ASN SEQRES 3 C 190 PRO SER LYS ASN ILE ARG MET MET GLN ALA GLN GLU ALA SEQRES 4 C 190 VAL SER ARG VAL LYS ARG MET GLN LYS ALA ALA LYS ILE SEQRES 5 C 190 LYS LYS LYS ALA ASN SER GLU GLY ASP ALA GLN THR LEU SEQRES 6 C 190 THR GLU VAL ASP LEU PHE ILE SER THR GLN ARG ILE LYS SEQRES 7 C 190 VAL LEU ASN ALA ASP THR GLN GLU THR MET MET ASP HIS SEQRES 8 C 190 ALA LEU ARG THR ILE SER TYR ILE ALA ASP ILE GLY ASN SEQRES 9 C 190 ILE VAL VAL LEU MET ALA ARG ARG ARG MET PRO ARG SER SEQRES 10 C 190 ALA SER GLN ASP CYS ILE GLU THR THR PRO GLY ALA GLN SEQRES 11 C 190 GLU GLY LYS LYS GLN TYR LYS MET ILE CYS HIS VAL PHE SEQRES 12 C 190 GLU SER GLU ASP ALA GLN LEU ILE ALA GLN SER ILE GLY SEQRES 13 C 190 GLN ALA PHE SER VAL ALA TYR GLN GLU PHE LEU ARG ALA SEQRES 14 C 190 ASN GLY ILE ASN PRO GLU ASP LEU SER GLN LYS GLU TYR SEQRES 15 C 190 SER ASP ILE ILE ASN THR GLN GLU SEQRES 1 D 14 GLN ASN GLY TYR GLU ASN PRO THR TYR LYS PHE PHE GLU SEQRES 2 D 14 GLN SEQRES 1 E 14 GLN ASN GLY TYR GLU ASN PRO THR TYR LYS PHE PHE GLU SEQRES 2 E 14 GLN SEQRES 1 F 14 GLN ASN GLY TYR GLU ASN PRO THR TYR LYS PHE PHE GLU SEQRES 2 F 14 GLN FORMUL 7 HOH *45(H2 O) HELIX 1 1 GLU A 365 GLY A 370 1 6 HELIX 2 2 ASN A 392 ALA A 418 1 27 HELIX 3 3 ASP A 509 ALA A 531 1 23 HELIX 4 4 ASP A 538 LYS A 542 5 5 HELIX 5 5 ILE A 548 GLU A 552 5 5 HELIX 6 6 GLU B 365 GLY B 370 1 6 HELIX 7 7 SER B 390 LYS B 415 1 26 HELIX 8 8 ASP B 509 ARG B 530 1 22 HELIX 9 9 GLU C 365 GLY C 370 1 6 HELIX 10 10 SER C 390 LYS C 416 1 27 HELIX 11 11 ASP C 509 GLN C 526 1 18 HELIX 12 12 THR D 761 GLU D 766 1 6 SHEET 1 A 8 THR A 449 ALA A 454 0 SHEET 2 A 8 ARG A 438 ASN A 443 -1 N VAL A 441 O MET A 450 SHEET 3 A 8 THR A 428 ILE A 434 -1 N PHE A 433 O LYS A 440 SHEET 4 A 8 ILE A 371 LEU A 384 -1 N ALA A 375 O VAL A 430 SHEET 5 A 8 LYS A 499 GLU A 506 -1 O VAL A 504 N LEU A 378 SHEET 6 A 8 ILE A 467 ARG A 473 -1 N LEU A 470 O HIS A 503 SHEET 7 A 8 ILE A 458 ALA A 462 -1 N SER A 459 O MET A 471 SHEET 8 A 8 GLY D 756 GLU D 758 -1 O TYR D 757 N ILE A 461 SHEET 1 B 4 ILE B 371 TYR B 377 0 SHEET 2 B 4 THR B 428 ILE B 434 -1 O THR B 428 N TYR B 377 SHEET 3 B 4 ARG B 438 ASN B 443 -1 O LEU B 442 N ASP B 431 SHEET 4 B 4 THR B 449 ALA B 454 -1 O MET B 451 N VAL B 441 SHEET 1 C 4 GLN B 382 LEU B 384 0 SHEET 2 C 4 LYS B 499 GLU B 506 -1 O MET B 500 N LEU B 383 SHEET 3 C 4 ILE B 467 ARG B 473 -1 N LEU B 470 O HIS B 503 SHEET 4 C 4 ASP B 463 ILE B 464 -1 N ILE B 464 O ILE B 467 SHEET 1 D 6 GLN C 382 SER C 385 0 SHEET 2 D 6 TYR C 498 GLU C 506 -1 O TYR C 498 N SER C 385 SHEET 3 D 6 ILE C 371 GLY C 379 -1 N ASN C 376 O GLU C 506 SHEET 4 D 6 THR C 428 ILE C 434 -1 O LEU C 432 N PHE C 373 SHEET 5 D 6 ARG C 438 ASN C 443 -1 O LYS C 440 N PHE C 433 SHEET 6 D 6 THR C 449 ALA C 454 -1 O MET C 450 N VAL C 441 SHEET 1 E 4 GLN C 382 SER C 385 0 SHEET 2 E 4 TYR C 498 GLU C 506 -1 O TYR C 498 N SER C 385 SHEET 3 E 4 ILE C 467 ALA C 472 -1 N LEU C 470 O HIS C 503 SHEET 4 E 4 ILE C 458 ILE C 464 -1 N SER C 459 O MET C 471 CRYST1 151.119 52.092 121.282 90.00 127.80 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006617 0.000000 0.005133 0.00000 SCALE2 0.000000 0.019197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010435 0.00000