HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 12-JUL-11 3SV6 TITLE CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH TELAPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEASE, NS4A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NS4A (UNP RESIDUES 1674-1688), NS3 (UNP RESIDUES 1027- COMPND 5 1208); COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 31646; SOURCE 4 STRAIN: SUBTYPE 1A, BID-V318; SOURCE 5 GENE: NS3-NS4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DRUG RESISTANCE, DRUG DESIGN, PROTEASE INHIBITORS, SERINE PROTEASE, KEYWDS 2 HYDROLASE, VIRAL PROTEIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SCHIFFER,K.P.ROMANO REVDAT 3 08-NOV-17 3SV6 1 REMARK REVDAT 2 23-AUG-17 3SV6 1 SOURCE REMARK REVDAT 1 05-SEP-12 3SV6 0 JRNL AUTH K.P.ROMANO,A.ALI,C.AYDIN,D.SOUMANA,A.OZEN,L.M.DEVEAU, JRNL AUTH 2 C.SILVER,H.CAO,A.NEWTON,C.J.PETROPOULOS,W.HUANG,C.A.SCHIFFER JRNL TITL THE MOLECULAR BASIS OF DRUG RESISTANCE AGAINST HEPATITIS C JRNL TITL 2 VIRUS NS3/4A PROTEASE INHIBITORS. JRNL REF PLOS PATHOG. V. 8 02832 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 22910833 JRNL DOI 10.1371/JOURNAL.PPAT.1002832 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1545 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1002 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2117 ; 1.320 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2400 ; 0.835 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;32.260 ;22.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;11.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1740 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 297 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1018 ; 0.654 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 422 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1633 ; 1.191 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 527 ; 1.838 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 478 ; 2.864 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 980 A 987 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4098 -23.9903 -4.7249 REMARK 3 T TENSOR REMARK 3 T11: 0.4043 T22: 0.1020 REMARK 3 T33: 0.2256 T12: 0.1187 REMARK 3 T13: 0.0423 T23: 0.0999 REMARK 3 L TENSOR REMARK 3 L11: 25.9557 L22: 27.2655 REMARK 3 L33: 38.2277 L12: 31.0182 REMARK 3 L13: 13.8758 L23: 19.5630 REMARK 3 S TENSOR REMARK 3 S11: 0.9537 S12: -0.9916 S13: -0.4976 REMARK 3 S21: 0.1557 S22: -1.2334 S23: 0.0511 REMARK 3 S31: -2.6431 S32: -1.5289 S33: 0.2797 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 988 A 996 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9756 -9.1971 12.0417 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1141 REMARK 3 T33: 0.1041 T12: 0.0037 REMARK 3 T13: 0.0177 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.8362 L22: 4.8143 REMARK 3 L33: 2.5230 L12: 0.9086 REMARK 3 L13: -1.2651 L23: 0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.0271 S13: -0.0337 REMARK 3 S21: -0.3197 S22: 0.0673 S23: -0.1161 REMARK 3 S31: 0.1138 S32: 0.0765 S33: 0.0712 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 997 A 1004 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5407 5.0094 27.8396 REMARK 3 T TENSOR REMARK 3 T11: 0.3759 T22: 0.1000 REMARK 3 T33: 0.0992 T12: -0.0555 REMARK 3 T13: 0.0408 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 4.5801 L22: 0.1063 REMARK 3 L33: 4.7860 L12: -0.3175 REMARK 3 L13: -3.0364 L23: -0.7534 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: -0.4961 S13: 0.1769 REMARK 3 S21: 0.2500 S22: 0.0147 S23: -0.0366 REMARK 3 S31: -0.7350 S32: 0.3474 S33: -0.1340 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1005 A 1012 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2089 4.5674 18.7657 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0481 REMARK 3 T33: 0.0867 T12: -0.0114 REMARK 3 T13: 0.0112 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.7456 L22: 2.9431 REMARK 3 L33: 4.6551 L12: -0.7501 REMARK 3 L13: -2.4431 L23: 0.7165 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.0980 S13: 0.0134 REMARK 3 S21: 0.0622 S22: -0.0429 S23: 0.0099 REMARK 3 S31: 0.0120 S32: 0.1975 S33: 0.0229 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1013 A 1026 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7541 -5.7115 9.5157 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0512 REMARK 3 T33: 0.0976 T12: 0.0111 REMARK 3 T13: 0.0680 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.4161 L22: 4.1479 REMARK 3 L33: 4.7290 L12: -1.1558 REMARK 3 L13: 0.5496 L23: -0.2396 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: 0.0471 S13: 0.0638 REMARK 3 S21: -0.4360 S22: -0.0920 S23: -0.3451 REMARK 3 S31: -0.1633 S32: 0.1736 S33: 0.0318 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1027 A 1034 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3163 -2.1761 24.2578 REMARK 3 T TENSOR REMARK 3 T11: 0.0894 T22: 0.0723 REMARK 3 T33: 0.0902 T12: -0.0311 REMARK 3 T13: -0.0051 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 7.1379 L22: 1.4249 REMARK 3 L33: 1.8671 L12: 1.3864 REMARK 3 L13: -2.4017 L23: 0.3642 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.1652 S13: 0.1561 REMARK 3 S21: 0.0571 S22: 0.0454 S23: -0.0862 REMARK 3 S31: -0.0821 S32: 0.1545 S33: -0.0667 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1035 A 1041 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4863 -5.8707 11.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.1313 REMARK 3 T33: 0.0779 T12: 0.0296 REMARK 3 T13: 0.0097 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.1336 L22: 9.0919 REMARK 3 L33: 4.7833 L12: -0.9120 REMARK 3 L13: 1.7528 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.3011 S12: 0.3151 S13: -0.0126 REMARK 3 S21: -0.6246 S22: -0.1041 S23: -0.0709 REMARK 3 S31: 0.0683 S32: 0.0973 S33: -0.1970 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1042 A 1063 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6325 -12.0350 20.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.0750 T22: 0.0723 REMARK 3 T33: 0.0779 T12: 0.0067 REMARK 3 T13: 0.0029 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7391 L22: 0.5814 REMARK 3 L33: 0.3532 L12: -0.1102 REMARK 3 L13: -0.3860 L23: 0.0506 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 0.0560 S13: -0.0301 REMARK 3 S21: 0.0159 S22: -0.0305 S23: -0.0375 REMARK 3 S31: 0.0075 S32: 0.0120 S33: 0.0226 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1064 A 1076 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9142 -16.2114 19.1519 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0805 REMARK 3 T33: 0.1128 T12: 0.0169 REMARK 3 T13: 0.0077 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.9322 L22: 1.5584 REMARK 3 L33: 1.1715 L12: 1.4600 REMARK 3 L13: -0.8721 L23: -1.3388 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: -0.0434 S13: -0.1312 REMARK 3 S21: -0.0421 S22: -0.1558 S23: -0.1128 REMARK 3 S31: 0.0747 S32: 0.1491 S33: 0.0750 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1077 A 1092 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2931 -15.2178 22.7357 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0632 REMARK 3 T33: 0.0930 T12: 0.0065 REMARK 3 T13: 0.0033 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.8262 L22: 0.9488 REMARK 3 L33: 1.0466 L12: 0.3878 REMARK 3 L13: 0.1556 L23: 0.3612 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.0546 S13: -0.0923 REMARK 3 S21: 0.0561 S22: -0.0524 S23: -0.0604 REMARK 3 S31: 0.0226 S32: 0.0373 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1093 A 1100 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8869 -8.8988 37.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.1484 REMARK 3 T33: 0.0402 T12: -0.0005 REMARK 3 T13: 0.0027 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.5051 L22: 1.6389 REMARK 3 L33: 6.2917 L12: 0.5499 REMARK 3 L13: -5.2578 L23: 0.1983 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: -0.3533 S13: -0.0999 REMARK 3 S21: 0.0890 S22: -0.0945 S23: -0.0115 REMARK 3 S31: 0.0878 S32: 0.3468 S33: 0.1231 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1101 A 1108 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4374 -1.5143 30.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0882 REMARK 3 T33: 0.1012 T12: -0.0069 REMARK 3 T13: 0.0227 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 4.2586 L22: 0.6871 REMARK 3 L33: 8.5835 L12: 1.6542 REMARK 3 L13: -4.9804 L23: -2.2677 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: -0.3026 S13: 0.2612 REMARK 3 S21: 0.0243 S22: -0.0718 S23: 0.0670 REMARK 3 S31: -0.1025 S32: 0.1242 S33: -0.0869 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1109 A 1113 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2465 4.1471 20.8456 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0180 REMARK 3 T33: 0.1170 T12: 0.0003 REMARK 3 T13: 0.0379 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 8.8724 L22: 11.1767 REMARK 3 L33: 25.4250 L12: -0.2085 REMARK 3 L13: -9.9201 L23: 6.2658 REMARK 3 S TENSOR REMARK 3 S11: 0.1485 S12: 0.1529 S13: 0.7741 REMARK 3 S21: -0.1876 S22: 0.1484 S23: 0.2918 REMARK 3 S31: -0.3435 S32: 0.3105 S33: -0.2969 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1114 A 1122 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1838 -5.7828 29.9563 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0852 REMARK 3 T33: 0.0722 T12: -0.0008 REMARK 3 T13: 0.0232 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.9706 L22: 3.7110 REMARK 3 L33: 1.3017 L12: 0.0712 REMARK 3 L13: -0.5298 L23: -0.8045 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.0673 S13: 0.0540 REMARK 3 S21: 0.0431 S22: -0.0274 S23: -0.0487 REMARK 3 S31: -0.0013 S32: -0.0551 S33: -0.0521 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1123 A 1129 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2645 -1.6406 25.1765 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1381 REMARK 3 T33: 0.0698 T12: 0.0403 REMARK 3 T13: 0.0211 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.9976 L22: 7.1534 REMARK 3 L33: 1.4526 L12: -1.4824 REMARK 3 L13: -1.0420 L23: -1.5969 REMARK 3 S TENSOR REMARK 3 S11: 0.1534 S12: 0.2234 S13: 0.0459 REMARK 3 S21: 0.0147 S22: -0.0815 S23: 0.0918 REMARK 3 S31: -0.1408 S32: -0.1999 S33: -0.0719 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1130 A 1139 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1915 1.2889 16.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.0963 REMARK 3 T33: 0.1021 T12: 0.0381 REMARK 3 T13: 0.0359 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 7.9538 L22: 7.7431 REMARK 3 L33: 1.3186 L12: -5.6587 REMARK 3 L13: -0.4970 L23: -1.9844 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: 0.0708 S13: 0.3750 REMARK 3 S21: 0.2601 S22: 0.1349 S23: -0.0156 REMARK 3 S31: -0.1897 S32: -0.1064 S33: -0.2132 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1140 A 1153 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5211 -5.4163 31.6495 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.1023 REMARK 3 T33: 0.0841 T12: -0.0080 REMARK 3 T13: 0.0165 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5801 L22: 0.7366 REMARK 3 L33: 6.6513 L12: -0.0873 REMARK 3 L13: -2.5757 L23: 1.4173 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.0953 S13: 0.1600 REMARK 3 S21: 0.0136 S22: 0.0341 S23: 0.0238 REMARK 3 S31: -0.0526 S32: 0.1234 S33: -0.1371 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1154 A 1159 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3267 -8.0402 18.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.1407 REMARK 3 T33: 0.0807 T12: 0.0210 REMARK 3 T13: 0.0034 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 5.7615 L22: 6.5018 REMARK 3 L33: 0.2620 L12: -1.1097 REMARK 3 L13: 1.2972 L23: -0.7548 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: 0.3114 S13: 0.1895 REMARK 3 S21: -0.1026 S22: -0.1134 S23: 0.2347 REMARK 3 S31: 0.0076 S32: 0.0565 S33: 0.0425 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1160 A 1172 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0049 -7.1813 21.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.1030 REMARK 3 T33: 0.0714 T12: 0.0020 REMARK 3 T13: 0.0215 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.2100 L22: 1.1500 REMARK 3 L33: 2.2180 L12: -0.6043 REMARK 3 L13: 0.9810 L23: -1.3638 REMARK 3 S TENSOR REMARK 3 S11: -0.0094 S12: 0.0319 S13: -0.0558 REMARK 3 S21: 0.0096 S22: 0.1848 S23: 0.1109 REMARK 3 S31: -0.0327 S32: -0.2456 S33: -0.1754 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1173 A 1180 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6949 -19.3583 31.4859 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.0476 REMARK 3 T33: 0.0940 T12: 0.0229 REMARK 3 T13: 0.0105 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 13.0893 L22: 2.3882 REMARK 3 L33: 5.3446 L12: -3.6686 REMARK 3 L13: -4.2821 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.2212 S12: -0.4284 S13: -0.5960 REMARK 3 S21: 0.0674 S22: 0.0305 S23: 0.2399 REMARK 3 S31: 0.4243 S32: 0.1774 S33: 0.1907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3SV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 3350, 0.1M MES (PH 6.5), 4% REMARK 280 AMMONIUM SULFATE, HANGING DROP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.55800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.16550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.16550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.55800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 987 CG CD CE NZ REMARK 470 LYS A 988 CG CD CE NZ REMARK 470 ASP A1003 CG OD1 OD2 REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 GLN A1021 CG CD OE1 NE2 REMARK 470 ARG A1024 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1165 CG CD CE NZ REMARK 470 ARG A1180 CG CD NE CZ NH1 NH2 REMARK 470 SER A1181 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1038 -165.62 -102.65 REMARK 500 PHE A1043 -157.51 -152.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 TELAPREVIR IS A LINEAR, PEPTIDOMIMETIC HCV NS3/4A PROTEASE REMARK 600 INHIBITOR FROM VERTEX. TELAPREVIR WAS FDA APPROVED FOR CLINICAL USE REMARK 600 IN HUMANS. THE DRUG MIMICS THE PEPTIDE BACKBONE OF PROTEINS, REMARK 600 ALTHOUGH THE DRUG MOIETIES CANNOT BE SEQUENCED USING AMINO ACID REMARK 600 NOMENCLATURE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 166 O REMARK 620 2 CYS A1097 SG 112.5 REMARK 620 3 CYS A1145 SG 116.2 112.2 REMARK 620 4 CYS A1099 SG 105.9 95.0 113.0 REMARK 620 N 1 2 3 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (1S,3AR,6AS)-2-[(2S)-2-({(2S)-2-CYCLOHEXYL-2- REMARK 630 [(PYRAZIN-2-YLCARBONYL)AMINO]ACETYL}AMINO)-3,3-DIMETHYLBUTANOYL]-N- REMARK 630 [(2R,3S)-1-(CYCLOPROPYLAMINO)-2-HYDROXY-1-OXOHEXAN-3-YL] REMARK 630 OCTAHYDROCYCLOPENTA[C]PYRROLE-1-CARBOXAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 SV6 A 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: VGL CHG TBG 037 03A REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SV6 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SU3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH VANIPREVIR REMARK 900 RELATED ID: 3SU4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH MK-5172 REMARK 900 RELATED ID: 3SUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SV7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 900 RELATED ID: 3SV8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 900 RELATED ID: 3SV9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COFACTOR 4A RESIDUES 986-1000 (MET LYS LYS LYS GLY SER VAL VAL REMARK 999 ILE VAL GLY ARG ILE ASN LEU) IN THIS ENTRY CORRESPOND TO RESIDUES REMARK 999 NUMBERING 1674-1688 OF DATABASE SEQUENCE REFERENCE (UNP A8DG50). REMARK 999 THIS PEPTIDE IS COVALENTLY LINKED TO THE N-TERMINUS OF NS3. C1679S REMARK 999 MUTATION WAS ENGINEERED TO PREVENT DISULFIDE FORMATION. THE V1686I REMARK 999 AND I1687N WERE ENGINEERED TO OPTIMIZE THE LINKER BETWEEN THE REMARK 999 COFACTOR 4A AND NS3. DBREF 3SV6 A 986 1000 UNP A8DG50 A8DG50_9HEPC 1674 1688 DBREF 3SV6 A 1001 1182 UNP A8DG50 A8DG50_9HEPC 1027 1208 SEQADV 3SV6 GLY A 980 UNP A8DG50 EXPRESSION TAG SEQADV 3SV6 SER A 981 UNP A8DG50 EXPRESSION TAG SEQADV 3SV6 HIS A 982 UNP A8DG50 EXPRESSION TAG SEQADV 3SV6 MET A 983 UNP A8DG50 EXPRESSION TAG SEQADV 3SV6 ALA A 984 UNP A8DG50 EXPRESSION TAG SEQADV 3SV6 SER A 985 UNP A8DG50 EXPRESSION TAG SEQADV 3SV6 MET A 986 UNP A8DG50 CYS 1674 ENGINEERED MUTATION SEQADV 3SV6 LYS A 987 UNP A8DG50 LEU 1675 ENGINEERED MUTATION SEQADV 3SV6 LYS A 988 UNP A8DG50 SER 1676 ENGINEERED MUTATION SEQADV 3SV6 LYS A 989 UNP A8DG50 THR 1677 ENGINEERED MUTATION SEQADV 3SV6 SER A 991 UNP A8DG50 CYS 1679 SEE REMARK 999 SEQADV 3SV6 ILE A 998 UNP A8DG50 VAL 1686 SEE REMARK 999 SEQADV 3SV6 ASN A 999 UNP A8DG50 ILE 1687 SEE REMARK 999 SEQADV 3SV6 SER A 1001 UNP A8DG50 ALA 1027 ENGINEERED MUTATION SEQADV 3SV6 GLY A 1002 UNP A8DG50 PRO 1028 ENGINEERED MUTATION SEQADV 3SV6 ASP A 1003 UNP A8DG50 ILE 1029 ENGINEERED MUTATION SEQADV 3SV6 GLU A 1013 UNP A8DG50 LEU 1039 ENGINEERED MUTATION SEQADV 3SV6 GLU A 1014 UNP A8DG50 LEU 1040 ENGINEERED MUTATION SEQADV 3SV6 GLN A 1017 UNP A8DG50 ILE 1043 ENGINEERED MUTATION SEQADV 3SV6 GLU A 1018 UNP A8DG50 ILE 1044 ENGINEERED MUTATION SEQADV 3SV6 GLN A 1021 UNP A8DG50 LEU 1047 ENGINEERED MUTATION SEQADV 3SV6 THR A 1040 UNP A8DG50 ALA 1066 ENGINEERED MUTATION SEQADV 3SV6 SER A 1047 UNP A8DG50 CYS 1073 ENGINEERED MUTATION SEQADV 3SV6 LEU A 1052 UNP A8DG50 CYS 1078 ENGINEERED MUTATION SEQADV 3SV6 THR A 1072 UNP A8DG50 ILE 1098 ENGINEERED MUTATION SEQADV 3SV6 GLN A 1086 UNP A8DG50 PRO 1112 ENGINEERED MUTATION SEQADV 3SV6 SER A 1159 UNP A8DG50 CYS 1185 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 A 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 A 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 A 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 A 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 A 203 ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU SEQRES 13 A 203 LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 A 203 HIS ALA VAL GLY ILE PHE ARG ALA ALA VAL SER THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO VAL GLU SER SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO HET SV6 A 1 49 HET GOL A 2 6 HET SO4 A 3 5 HET ZN A 4 1 HETNAM SV6 (1S,3AR,6AS)-2-[(2S)-2-({(2S)-2-CYCLOHEXYL-2-[(PYRAZIN- HETNAM 2 SV6 2-YLCARBONYL)AMINO]ACETYL}AMINO)-3,3- HETNAM 3 SV6 DIMETHYLBUTANOYL]-N-[(2R,3S)-1-(CYCLOPROPYLAMINO)-2- HETNAM 4 SV6 HYDROXY-1-OXOHEXAN-3-YL]OCTAHYDROCYCLOPENTA[C]PYRROLE- HETNAM 5 SV6 1-CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN SV6 TELAPREVIR, BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SV6 C36 H55 N7 O6 FORMUL 3 GOL C3 H8 O3 FORMUL 4 SO4 O4 S 2- FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *167(H2 O) HELIX 1 1 HIS A 982 MET A 986 5 5 HELIX 2 2 GLY A 1012 GLY A 1023 1 12 HELIX 3 3 TYR A 1056 GLY A 1060 1 5 HELIX 4 4 SER A 1133 LYS A 1136 5 4 HELIX 5 5 VAL A 1172 SER A 1181 1 10 SHEET 1 A 7 TYR A1006 GLN A1009 0 SHEET 2 A 7 VAL A 993 ASN A 999 -1 N ASN A 999 O TYR A1006 SHEET 3 A 7 VAL A1033 SER A1037 -1 O ILE A1035 N VAL A 995 SHEET 4 A 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 A 7 VAL A1051 VAL A1055 -1 O TRP A1053 N THR A1046 SHEET 6 A 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 A 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 B 7 ASP A1103 VAL A1107 0 SHEET 2 B 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 B 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 B 7 VAL A1163 PRO A1171 -1 O ALA A1164 N ARG A1130 SHEET 5 B 7 ALA A1150 THR A1160 -1 N ALA A1156 O ASP A1168 SHEET 6 B 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 B 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 LINK ZN ZN A 4 O HOH A 166 1555 1555 2.20 LINK SG CYS A1097 ZN ZN A 4 1555 1555 2.27 LINK SG CYS A1145 ZN ZN A 4 1555 1555 2.32 LINK SG CYS A1099 ZN ZN A 4 1555 1555 2.45 LINK OG SER A1139 CAI SV6 A 1 1555 1555 1.48 SITE 1 AC1 15 HOH A 154 HOH A 158 HOH A 176 HIS A 982 SITE 2 AC1 15 THR A1042 HIS A1057 ARG A1123 LEU A1135 SITE 3 AC1 15 GLY A1137 SER A1138 SER A1139 ARG A1155 SITE 4 AC1 15 ALA A1156 ALA A1157 SER A1159 SITE 1 AC2 12 HOH A 54 HOH A 77 HOH A 97 HOH A 99 SITE 2 AC2 12 LYS A1068 GLN A1086 CYS A1097 THR A1098 SITE 3 AC2 12 CYS A1099 GLY A1100 ARG A1118 GLU A1173 SITE 1 AC3 7 HOH A 25 HOH A 28 HOH A 82 HOH A 119 SITE 2 AC3 7 TYR A1006 GLN A1008 TYR A1056 SITE 1 AC4 4 HOH A 166 CYS A1097 CYS A1099 CYS A1145 CRYST1 55.116 58.850 60.331 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016575 0.00000