data_3SV8 # _entry.id 3SV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SV8 RCSB RCSB066693 WWPDB D_1000066693 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SU3 'Crystal structure of NS3/4A protease in complex with vaniprevir' unspecified PDB 3SU4 'Crystal structure of NS3/4A protease variant R155K in complex with vaniprevir' unspecified PDB 3SU5 'Crystal structure of NS3/4A protease variant D168A in complex with vaniprevir' unspecified PDB 3SU6 'Crystal structure of NS3/4A protease variant A156T in complex with vaniprevir' unspecified PDB 3SUD 'Crystal structure of NS3/4A protease in complex with MK-5172' unspecified PDB 3SUE 'Crystal structure of NS3/4A protease variant R155K in complex with MK-5172' unspecified PDB 3SUF 'Crystal structure of NS3/4A protease variant D168A in complex with MK-5172' unspecified PDB 3SUG 'Crystal structure of NS3/4A protease variant A156T in complex with MK-5172' unspecified PDB 3SV6 'Crystal structure of NS3/4A protease in complex with Telaprevir' unspecified PDB 3SV7 'Crystal structure of NS3/4A protease variant R155K in complex with Telaprevir' unspecified PDB 3SV9 'Crystal structure of NS3/4A protease variant A156T in complex with Telaprevir' unspecified # _pdbx_database_status.entry_id 3SV8 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-07-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schiffer, C.A.' 1 'Romano, K.P.' 2 # _citation.id primary _citation.title 'The Molecular Basis of Drug Resistance against Hepatitis C Virus NS3/4A Protease Inhibitors.' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 8 _citation.page_first e1002832 _citation.page_last e1002832 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22910833 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1002832 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Romano, K.P.' 1 primary 'Ali, A.' 2 primary 'Aydin, C.' 3 primary 'Soumana, D.' 4 primary 'Ozen, A.' 5 primary 'Deveau, L.M.' 6 primary 'Silver, C.' 7 primary 'Cao, H.' 8 primary 'Newton, A.' 9 primary 'Petropoulos, C.J.' 10 primary 'Huang, W.' 11 primary 'Schiffer, C.A.' 12 # _cell.entry_id 3SV8 _cell.length_a 69.532 _cell.length_b 69.532 _cell.length_c 79.051 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SV8 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NS3 protease, NS4A protein' 21459.320 1 ? ;A1027S, P1028G, I1029D, L1039E, L1040E, I1043Q, I1044E, L1047Q, A1066T, C1073S, C1078L, I1098T, P1112Q, S1165A, C1185S, C1679S, V1686I, I1687N, D1168A ; 'NS4A (UNP residues 1674-1688), NS3 (UNP residues 1027-1208)' ? 2 non-polymer syn ;(1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide ; 681.865 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASMKKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGA GTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSS GGPLLCPAGHAVGIFRAAVSTRGVAKAVAFIPVESLETTMRSP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASMKKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGA GTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSS GGPLLCPAGHAVGIFRAAVSTRGVAKAVAFIPVESLETTMRSP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 MET n 1 8 LYS n 1 9 LYS n 1 10 LYS n 1 11 GLY n 1 12 SER n 1 13 VAL n 1 14 VAL n 1 15 ILE n 1 16 VAL n 1 17 GLY n 1 18 ARG n 1 19 ILE n 1 20 ASN n 1 21 LEU n 1 22 SER n 1 23 GLY n 1 24 ASP n 1 25 THR n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 GLN n 1 30 GLN n 1 31 THR n 1 32 ARG n 1 33 GLY n 1 34 GLU n 1 35 GLU n 1 36 GLY n 1 37 CYS n 1 38 GLN n 1 39 GLU n 1 40 THR n 1 41 SER n 1 42 GLN n 1 43 THR n 1 44 GLY n 1 45 ARG n 1 46 ASP n 1 47 LYS n 1 48 ASN n 1 49 GLN n 1 50 VAL n 1 51 GLU n 1 52 GLY n 1 53 GLU n 1 54 VAL n 1 55 GLN n 1 56 ILE n 1 57 VAL n 1 58 SER n 1 59 THR n 1 60 ALA n 1 61 THR n 1 62 GLN n 1 63 THR n 1 64 PHE n 1 65 LEU n 1 66 ALA n 1 67 THR n 1 68 SER n 1 69 ILE n 1 70 ASN n 1 71 GLY n 1 72 VAL n 1 73 LEU n 1 74 TRP n 1 75 THR n 1 76 VAL n 1 77 TYR n 1 78 HIS n 1 79 GLY n 1 80 ALA n 1 81 GLY n 1 82 THR n 1 83 ARG n 1 84 THR n 1 85 ILE n 1 86 ALA n 1 87 SER n 1 88 PRO n 1 89 LYS n 1 90 GLY n 1 91 PRO n 1 92 VAL n 1 93 THR n 1 94 GLN n 1 95 MET n 1 96 TYR n 1 97 THR n 1 98 ASN n 1 99 VAL n 1 100 ASP n 1 101 LYS n 1 102 ASP n 1 103 LEU n 1 104 VAL n 1 105 GLY n 1 106 TRP n 1 107 GLN n 1 108 ALA n 1 109 PRO n 1 110 GLN n 1 111 GLY n 1 112 SER n 1 113 ARG n 1 114 SER n 1 115 LEU n 1 116 THR n 1 117 PRO n 1 118 CYS n 1 119 THR n 1 120 CYS n 1 121 GLY n 1 122 SER n 1 123 SER n 1 124 ASP n 1 125 LEU n 1 126 TYR n 1 127 LEU n 1 128 VAL n 1 129 THR n 1 130 ARG n 1 131 HIS n 1 132 ALA n 1 133 ASP n 1 134 VAL n 1 135 ILE n 1 136 PRO n 1 137 VAL n 1 138 ARG n 1 139 ARG n 1 140 ARG n 1 141 GLY n 1 142 ASP n 1 143 SER n 1 144 ARG n 1 145 GLY n 1 146 SER n 1 147 LEU n 1 148 LEU n 1 149 SER n 1 150 PRO n 1 151 ARG n 1 152 PRO n 1 153 ILE n 1 154 SER n 1 155 TYR n 1 156 LEU n 1 157 LYS n 1 158 GLY n 1 159 SER n 1 160 SER n 1 161 GLY n 1 162 GLY n 1 163 PRO n 1 164 LEU n 1 165 LEU n 1 166 CYS n 1 167 PRO n 1 168 ALA n 1 169 GLY n 1 170 HIS n 1 171 ALA n 1 172 VAL n 1 173 GLY n 1 174 ILE n 1 175 PHE n 1 176 ARG n 1 177 ALA n 1 178 ALA n 1 179 VAL n 1 180 SER n 1 181 THR n 1 182 ARG n 1 183 GLY n 1 184 VAL n 1 185 ALA n 1 186 LYS n 1 187 ALA n 1 188 VAL n 1 189 ALA n 1 190 PHE n 1 191 ILE n 1 192 PRO n 1 193 VAL n 1 194 GLU n 1 195 SER n 1 196 LEU n 1 197 GLU n 1 198 THR n 1 199 THR n 1 200 MET n 1 201 ARG n 1 202 SER n 1 203 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 7 21 ? ? NS3-NS4A ? 'subtype 1a, BID-V318' ? ? ? ? 'Hepatitis C virus' 31646 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? PET28a ? ? 1 2 sample ? 22 203 ? ? NS3-NS4A ? 'subtype 1a, BID-V318' ? ? ? ? 'Hepatitis C virus' 31646 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? PET28a ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP A8DG50_9HEPC A8DG50 1 CLSTGCVVIVGRVIL 1674 ? 2 UNP A8DG50_9HEPC A8DG50 1 ;APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTAAQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDK DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCT RGVAKAVDFIPVESLETTMRSP ; 1027 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SV8 A 7 ? 21 ? A8DG50 1674 ? 1688 ? 986 1000 2 2 3SV8 A 22 ? 203 ? A8DG50 1027 ? 1208 ? 1001 1182 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SV8 GLY A 1 ? UNP A8DG50 ? ? 'EXPRESSION TAG' 980 1 1 3SV8 SER A 2 ? UNP A8DG50 ? ? 'EXPRESSION TAG' 981 2 1 3SV8 HIS A 3 ? UNP A8DG50 ? ? 'EXPRESSION TAG' 982 3 1 3SV8 MET A 4 ? UNP A8DG50 ? ? 'EXPRESSION TAG' 983 4 1 3SV8 ALA A 5 ? UNP A8DG50 ? ? 'EXPRESSION TAG' 984 5 1 3SV8 SER A 6 ? UNP A8DG50 ? ? 'EXPRESSION TAG' 985 6 1 3SV8 MET A 7 ? UNP A8DG50 CYS 1674 'ENGINEERED MUTATION' 986 7 1 3SV8 LYS A 8 ? UNP A8DG50 LEU 1675 'ENGINEERED MUTATION' 987 8 1 3SV8 LYS A 9 ? UNP A8DG50 SER 1676 'ENGINEERED MUTATION' 988 9 1 3SV8 LYS A 10 ? UNP A8DG50 THR 1677 'ENGINEERED MUTATION' 989 10 1 3SV8 SER A 12 ? UNP A8DG50 CYS 1679 'SEE REMARK 999' 991 11 1 3SV8 ILE A 19 ? UNP A8DG50 VAL 1686 'SEE REMARK 999' 998 12 1 3SV8 ASN A 20 ? UNP A8DG50 ILE 1687 'SEE REMARK 999' 999 13 2 3SV8 SER A 22 ? UNP A8DG50 ALA 1027 'ENGINEERED MUTATION' 1001 14 2 3SV8 GLY A 23 ? UNP A8DG50 PRO 1028 'ENGINEERED MUTATION' 1002 15 2 3SV8 ASP A 24 ? UNP A8DG50 ILE 1029 'ENGINEERED MUTATION' 1003 16 2 3SV8 GLU A 34 ? UNP A8DG50 LEU 1039 'ENGINEERED MUTATION' 1013 17 2 3SV8 GLU A 35 ? UNP A8DG50 LEU 1040 'ENGINEERED MUTATION' 1014 18 2 3SV8 GLN A 38 ? UNP A8DG50 ILE 1043 'ENGINEERED MUTATION' 1017 19 2 3SV8 GLU A 39 ? UNP A8DG50 ILE 1044 'ENGINEERED MUTATION' 1018 20 2 3SV8 GLN A 42 ? UNP A8DG50 LEU 1047 'ENGINEERED MUTATION' 1021 21 2 3SV8 THR A 61 ? UNP A8DG50 ALA 1066 'ENGINEERED MUTATION' 1040 22 2 3SV8 SER A 68 ? UNP A8DG50 CYS 1073 'ENGINEERED MUTATION' 1047 23 2 3SV8 LEU A 73 ? UNP A8DG50 CYS 1078 'ENGINEERED MUTATION' 1052 24 2 3SV8 THR A 93 ? UNP A8DG50 ILE 1098 'ENGINEERED MUTATION' 1072 25 2 3SV8 GLN A 107 ? UNP A8DG50 PRO 1112 'ENGINEERED MUTATION' 1086 26 2 3SV8 SER A 180 ? UNP A8DG50 CYS 1185 'ENGINEERED MUTATION' 1159 27 2 3SV8 ALA A 189 ? UNP A8DG50 ASP 1194 'ENGINEERED MUTATION' 1168 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SV6 peptide-like . ;(1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide ; 'TELAPREVIR, bound form' 'C36 H55 N7 O6' 681.865 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3SV8 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drop, vapor diffusion' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pdbx_details '20-25% PEG 3350, 0.1M MES (pH 6.5), 4% ammonium sulfate, hanging drop, vapor diffusion, temperature 295K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2011-03-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3SV8 _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 30.000 _reflns.number_obs 7049 _reflns.pdbx_Rmerge_I_obs 0.136 _reflns.pdbx_netI_over_sigmaI 9.700 _reflns.pdbx_chi_squared 2.195 _reflns.pdbx_redundancy 7.200 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.690 ? ? ? 0.561 ? ? 1.066 7.000 ? 1170 100.000 1 1 2.690 2.800 ? ? ? 0.442 ? ? 1.269 7.000 ? 1147 100.000 2 1 2.800 2.930 ? ? ? 0.328 ? ? 1.568 7.100 ? 1175 100.000 3 1 2.930 3.080 ? ? ? 0.273 ? ? 1.859 7.200 ? 1168 100.000 4 1 3.080 3.280 ? ? ? 0.211 ? ? 2.091 7.200 ? 1152 100.000 5 1 3.280 3.530 ? ? ? 0.166 ? ? 2.435 7.300 ? 1173 99.900 6 1 3.530 3.880 ? ? ? 0.144 ? ? 3.514 7.200 ? 1165 100.000 7 1 3.880 4.440 ? ? ? 0.096 ? ? 3.152 7.400 ? 1174 100.000 8 1 4.440 5.590 ? ? ? 0.074 ? ? 2.413 7.400 ? 1176 100.000 9 1 5.590 30.000 ? ? ? 0.063 ? ? 2.454 7.200 ? 1190 98.800 10 1 # _refine.entry_id 3SV8 _refine.ls_d_res_high 2.5 _refine.ls_d_res_low 21.99 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8600 _refine.ls_number_reflns_obs 7049 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_obs 0.2089 _refine.ls_R_factor_R_work 0.2053 _refine.ls_wR_factor_R_work 0.2020 _refine.ls_R_factor_R_free 0.2825 _refine.ls_wR_factor_R_free 0.2877 _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 332 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 52.5702 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0800 _refine.aniso_B[2][2] -0.0800 _refine.aniso_B[3][3] 0.1600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9410 _refine.correlation_coeff_Fo_to_Fc_free 0.8840 _refine.overall_SU_R_Cruickshank_DPI 0.7302 _refine.overall_SU_R_free 0.3391 _refine.pdbx_overall_ESU_R_Free 0.3390 _refine.overall_SU_ML 0.2700 _refine.overall_SU_B 24.8400 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7686 _refine.B_iso_max 100.070 _refine.B_iso_min 2.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1388 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 1488 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 21.99 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1471 0.009 0.021 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 978 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2006 1.352 2.000 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2385 1.065 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 192 7.250 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 47 32.330 21.702 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 211 17.007 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13 18.097 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 241 0.073 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1635 0.004 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 288 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 959 0.433 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 398 0.067 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1541 0.808 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 512 1.251 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 462 1.609 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.5650 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.4600 _refine_ls_shell.number_reflns_R_work 480 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2650 _refine_ls_shell.R_factor_R_free 0.3810 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 18 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 498 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3SV8 _struct.title 'Crystal structure of NS3/4A protease variant D168A in complex with Telaprevir' _struct.pdbx_descriptor 'NS3 protease, NS4A protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SV8 _struct_keywords.text 'drug resistance, drug design, Protease inhibitors, serine protease, HYDROLASE, VIRAL PROTEIN, HYDROLASE-INHIBITOR complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, HYDROLASE/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is the same as asym.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? GLY A 44 ? GLY A 1012 GLY A 1023 1 ? 12 HELX_P HELX_P2 2 TYR A 77 ? GLY A 81 ? TYR A 1056 GLY A 1060 1 ? 5 HELX_P HELX_P3 3 ILE A 153 ? LYS A 157 ? ILE A 1132 LYS A 1136 1 ? 5 HELX_P HELX_P4 4 VAL A 193 ? ARG A 201 ? VAL A 1172 ARG A 1180 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 160 OG ? ? ? 1_555 B SV6 . CAI ? ? A SER 1139 A SV6 1 1_555 ? ? ? ? ? ? ? 1.357 ? metalc1 metalc ? ? D ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 3 A HOH 53 1_555 ? ? ? ? ? ? ? 2.246 ? metalc2 metalc ? ? A CYS 120 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1099 A ZN 3 1_555 ? ? ? ? ? ? ? 2.393 ? metalc3 metalc ? ? A CYS 118 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1097 A ZN 3 1_555 ? ? ? ? ? ? ? 2.475 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 27 ? GLN A 30 ? TYR A 1006 GLN A 1009 A 2 VAL A 14 ? ASN A 20 ? VAL A 993 ASN A 999 A 3 VAL A 54 ? SER A 58 ? VAL A 1033 SER A 1037 A 4 THR A 63 ? ILE A 69 ? THR A 1042 ILE A 1048 A 5 VAL A 72 ? VAL A 76 ? VAL A 1051 VAL A 1055 A 6 LEU A 103 ? GLN A 107 ? LEU A 1082 GLN A 1086 A 7 TYR A 96 ? ASN A 98 ? TYR A 1075 ASN A 1077 B 1 ASP A 124 ? VAL A 128 ? ASP A 1103 VAL A 1107 B 2 VAL A 134 ? ARG A 139 ? VAL A 1113 ARG A 1118 B 3 ARG A 144 ? PRO A 152 ? ARG A 1123 PRO A 1131 B 4 VAL A 184 ? PRO A 192 ? VAL A 1163 PRO A 1171 B 5 ALA A 171 ? THR A 181 ? ALA A 1150 THR A 1160 B 6 PRO A 163 ? LEU A 165 ? PRO A 1142 LEU A 1144 B 7 ASP A 124 ? VAL A 128 ? ASP A 1103 VAL A 1107 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 29 ? O GLN A 1008 N ARG A 18 ? N ARG A 997 A 2 3 N ILE A 19 ? N ILE A 998 O VAL A 54 ? O VAL A 1033 A 3 4 N GLN A 55 ? N GLN A 1034 O ALA A 66 ? O ALA A 1045 A 4 5 N THR A 67 ? N THR A 1046 O TRP A 74 ? O TRP A 1053 A 5 6 N LEU A 73 ? N LEU A 1052 O TRP A 106 ? O TRP A 1085 A 6 7 O LEU A 103 ? O LEU A 1082 N ASN A 98 ? N ASN A 1077 B 1 2 N LEU A 127 ? N LEU A 1106 O ILE A 135 ? O ILE A 1114 B 2 3 N ARG A 138 ? N ARG A 1117 O SER A 146 ? O SER A 1125 B 3 4 N GLY A 145 ? N GLY A 1124 O VAL A 188 ? O VAL A 1167 B 4 5 O LYS A 186 ? O LYS A 1165 N VAL A 179 ? N VAL A 1158 B 5 6 O VAL A 172 ? O VAL A 1151 N LEU A 164 ? N LEU A 1143 B 6 7 O PRO A 163 ? O PRO A 1142 N VAL A 128 ? N VAL A 1107 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE SV6 A 1' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 2' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ASP A 24 ? ASP A 1003 . ? 3_555 ? 2 AC1 13 THR A 63 ? THR A 1042 . ? 1_555 ? 3 AC1 13 HIS A 78 ? HIS A 1057 . ? 1_555 ? 4 AC1 13 VAL A 134 ? VAL A 1113 . ? 3_555 ? 5 AC1 13 LYS A 157 ? LYS A 1136 . ? 1_555 ? 6 AC1 13 GLY A 158 ? GLY A 1137 . ? 1_555 ? 7 AC1 13 SER A 159 ? SER A 1138 . ? 1_555 ? 8 AC1 13 SER A 160 ? SER A 1139 . ? 1_555 ? 9 AC1 13 ARG A 176 ? ARG A 1155 . ? 1_555 ? 10 AC1 13 ALA A 177 ? ALA A 1156 . ? 1_555 ? 11 AC1 13 ALA A 178 ? ALA A 1157 . ? 1_555 ? 12 AC1 13 VAL A 179 ? VAL A 1158 . ? 1_555 ? 13 AC1 13 SER A 180 ? SER A 1159 . ? 1_555 ? 14 AC2 5 HOH E . ? HOH A 46 . ? 1_555 ? 15 AC2 5 TYR A 126 ? TYR A 1105 . ? 1_555 ? 16 AC2 5 ARG A 144 ? ARG A 1123 . ? 4_454 ? 17 AC2 5 CYS A 166 ? CYS A 1145 . ? 1_555 ? 18 AC2 5 GLY A 169 ? GLY A 1148 . ? 1_555 ? 19 AC3 4 HOH E . ? HOH A 53 . ? 1_555 ? 20 AC3 4 CYS A 118 ? CYS A 1097 . ? 1_555 ? 21 AC3 4 CYS A 120 ? CYS A 1099 . ? 1_555 ? 22 AC3 4 CYS A 166 ? CYS A 1145 . ? 1_555 ? # _atom_sites.entry_id 3SV8 _atom_sites.fract_transf_matrix[1][1] 0.014382 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014382 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012650 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 980 ? ? ? A . n A 1 2 SER 2 981 ? ? ? A . n A 1 3 HIS 3 982 ? ? ? A . n A 1 4 MET 4 983 ? ? ? A . n A 1 5 ALA 5 984 ? ? ? A . n A 1 6 SER 6 985 ? ? ? A . n A 1 7 MET 7 986 ? ? ? A . n A 1 8 LYS 8 987 ? ? ? A . n A 1 9 LYS 9 988 ? ? ? A . n A 1 10 LYS 10 989 989 LYS LYS A . n A 1 11 GLY 11 990 990 GLY GLY A . n A 1 12 SER 12 991 991 SER SER A . n A 1 13 VAL 13 992 992 VAL VAL A . n A 1 14 VAL 14 993 993 VAL VAL A . n A 1 15 ILE 15 994 994 ILE ILE A . n A 1 16 VAL 16 995 995 VAL VAL A . n A 1 17 GLY 17 996 996 GLY GLY A . n A 1 18 ARG 18 997 997 ARG ARG A . n A 1 19 ILE 19 998 998 ILE ILE A . n A 1 20 ASN 20 999 999 ASN ASN A . n A 1 21 LEU 21 1000 1000 LEU LEU A . n A 1 22 SER 22 1001 1001 SER SER A . n A 1 23 GLY 23 1002 1002 GLY GLY A . n A 1 24 ASP 24 1003 1003 ASP ASP A . n A 1 25 THR 25 1004 1004 THR THR A . n A 1 26 ALA 26 1005 1005 ALA ALA A . n A 1 27 TYR 27 1006 1006 TYR TYR A . n A 1 28 ALA 28 1007 1007 ALA ALA A . n A 1 29 GLN 29 1008 1008 GLN GLN A . n A 1 30 GLN 30 1009 1009 GLN GLN A . n A 1 31 THR 31 1010 1010 THR THR A . n A 1 32 ARG 32 1011 1011 ARG ARG A . n A 1 33 GLY 33 1012 1012 GLY GLY A . n A 1 34 GLU 34 1013 1013 GLU GLU A . n A 1 35 GLU 35 1014 1014 GLU GLU A . n A 1 36 GLY 36 1015 1015 GLY GLY A . n A 1 37 CYS 37 1016 1016 CYS CYS A . n A 1 38 GLN 38 1017 1017 GLN GLN A . n A 1 39 GLU 39 1018 1018 GLU GLU A . n A 1 40 THR 40 1019 1019 THR THR A . n A 1 41 SER 41 1020 1020 SER SER A . n A 1 42 GLN 42 1021 1021 GLN GLN A . n A 1 43 THR 43 1022 1022 THR THR A . n A 1 44 GLY 44 1023 1023 GLY GLY A . n A 1 45 ARG 45 1024 1024 ARG ARG A . n A 1 46 ASP 46 1025 1025 ASP ASP A . n A 1 47 LYS 47 1026 1026 LYS LYS A . n A 1 48 ASN 48 1027 1027 ASN ASN A . n A 1 49 GLN 49 1028 1028 GLN GLN A . n A 1 50 VAL 50 1029 1029 VAL VAL A . n A 1 51 GLU 51 1030 1030 GLU GLU A . n A 1 52 GLY 52 1031 1031 GLY GLY A . n A 1 53 GLU 53 1032 1032 GLU GLU A . n A 1 54 VAL 54 1033 1033 VAL VAL A . n A 1 55 GLN 55 1034 1034 GLN GLN A . n A 1 56 ILE 56 1035 1035 ILE ILE A . n A 1 57 VAL 57 1036 1036 VAL VAL A . n A 1 58 SER 58 1037 1037 SER SER A . n A 1 59 THR 59 1038 1038 THR THR A . n A 1 60 ALA 60 1039 1039 ALA ALA A . n A 1 61 THR 61 1040 1040 THR THR A . n A 1 62 GLN 62 1041 1041 GLN GLN A . n A 1 63 THR 63 1042 1042 THR THR A . n A 1 64 PHE 64 1043 1043 PHE PHE A . n A 1 65 LEU 65 1044 1044 LEU LEU A . n A 1 66 ALA 66 1045 1045 ALA ALA A . n A 1 67 THR 67 1046 1046 THR THR A . n A 1 68 SER 68 1047 1047 SER SER A . n A 1 69 ILE 69 1048 1048 ILE ILE A . n A 1 70 ASN 70 1049 1049 ASN ASN A . n A 1 71 GLY 71 1050 1050 GLY GLY A . n A 1 72 VAL 72 1051 1051 VAL VAL A . n A 1 73 LEU 73 1052 1052 LEU LEU A . n A 1 74 TRP 74 1053 1053 TRP TRP A . n A 1 75 THR 75 1054 1054 THR THR A . n A 1 76 VAL 76 1055 1055 VAL VAL A . n A 1 77 TYR 77 1056 1056 TYR TYR A . n A 1 78 HIS 78 1057 1057 HIS HIS A . n A 1 79 GLY 79 1058 1058 GLY GLY A . n A 1 80 ALA 80 1059 1059 ALA ALA A . n A 1 81 GLY 81 1060 1060 GLY GLY A . n A 1 82 THR 82 1061 1061 THR THR A . n A 1 83 ARG 83 1062 1062 ARG ARG A . n A 1 84 THR 84 1063 1063 THR THR A . n A 1 85 ILE 85 1064 1064 ILE ILE A . n A 1 86 ALA 86 1065 1065 ALA ALA A . n A 1 87 SER 87 1066 1066 SER SER A . n A 1 88 PRO 88 1067 1067 PRO PRO A . n A 1 89 LYS 89 1068 1068 LYS LYS A . n A 1 90 GLY 90 1069 1069 GLY GLY A . n A 1 91 PRO 91 1070 1070 PRO PRO A . n A 1 92 VAL 92 1071 1071 VAL VAL A . n A 1 93 THR 93 1072 1072 THR THR A . n A 1 94 GLN 94 1073 1073 GLN GLN A . n A 1 95 MET 95 1074 1074 MET MET A . n A 1 96 TYR 96 1075 1075 TYR TYR A . n A 1 97 THR 97 1076 1076 THR THR A . n A 1 98 ASN 98 1077 1077 ASN ASN A . n A 1 99 VAL 99 1078 1078 VAL VAL A . n A 1 100 ASP 100 1079 1079 ASP ASP A . n A 1 101 LYS 101 1080 1080 LYS LYS A . n A 1 102 ASP 102 1081 1081 ASP ASP A . n A 1 103 LEU 103 1082 1082 LEU LEU A . n A 1 104 VAL 104 1083 1083 VAL VAL A . n A 1 105 GLY 105 1084 1084 GLY GLY A . n A 1 106 TRP 106 1085 1085 TRP TRP A . n A 1 107 GLN 107 1086 1086 GLN GLN A . n A 1 108 ALA 108 1087 1087 ALA ALA A . n A 1 109 PRO 109 1088 1088 PRO PRO A . n A 1 110 GLN 110 1089 1089 GLN GLN A . n A 1 111 GLY 111 1090 1090 GLY GLY A . n A 1 112 SER 112 1091 1091 SER SER A . n A 1 113 ARG 113 1092 1092 ARG ARG A . n A 1 114 SER 114 1093 1093 SER SER A . n A 1 115 LEU 115 1094 1094 LEU LEU A . n A 1 116 THR 116 1095 1095 THR THR A . n A 1 117 PRO 117 1096 1096 PRO PRO A . n A 1 118 CYS 118 1097 1097 CYS CYS A . n A 1 119 THR 119 1098 1098 THR THR A . n A 1 120 CYS 120 1099 1099 CYS CYS A . n A 1 121 GLY 121 1100 1100 GLY GLY A . n A 1 122 SER 122 1101 1101 SER SER A . n A 1 123 SER 123 1102 1102 SER SER A . n A 1 124 ASP 124 1103 1103 ASP ASP A . n A 1 125 LEU 125 1104 1104 LEU LEU A . n A 1 126 TYR 126 1105 1105 TYR TYR A . n A 1 127 LEU 127 1106 1106 LEU LEU A . n A 1 128 VAL 128 1107 1107 VAL VAL A . n A 1 129 THR 129 1108 1108 THR THR A . n A 1 130 ARG 130 1109 1109 ARG ARG A . n A 1 131 HIS 131 1110 1110 HIS HIS A . n A 1 132 ALA 132 1111 1111 ALA ALA A . n A 1 133 ASP 133 1112 1112 ASP ASP A . n A 1 134 VAL 134 1113 1113 VAL VAL A . n A 1 135 ILE 135 1114 1114 ILE ILE A . n A 1 136 PRO 136 1115 1115 PRO PRO A . n A 1 137 VAL 137 1116 1116 VAL VAL A . n A 1 138 ARG 138 1117 1117 ARG ARG A . n A 1 139 ARG 139 1118 1118 ARG ARG A . n A 1 140 ARG 140 1119 1119 ARG ARG A . n A 1 141 GLY 141 1120 1120 GLY GLY A . n A 1 142 ASP 142 1121 1121 ASP ASP A . n A 1 143 SER 143 1122 1122 SER SER A . n A 1 144 ARG 144 1123 1123 ARG ARG A . n A 1 145 GLY 145 1124 1124 GLY GLY A . n A 1 146 SER 146 1125 1125 SER SER A . n A 1 147 LEU 147 1126 1126 LEU LEU A . n A 1 148 LEU 148 1127 1127 LEU LEU A . n A 1 149 SER 149 1128 1128 SER SER A . n A 1 150 PRO 150 1129 1129 PRO PRO A . n A 1 151 ARG 151 1130 1130 ARG ARG A . n A 1 152 PRO 152 1131 1131 PRO PRO A . n A 1 153 ILE 153 1132 1132 ILE ILE A . n A 1 154 SER 154 1133 1133 SER SER A . n A 1 155 TYR 155 1134 1134 TYR TYR A . n A 1 156 LEU 156 1135 1135 LEU LEU A . n A 1 157 LYS 157 1136 1136 LYS LYS A . n A 1 158 GLY 158 1137 1137 GLY GLY A . n A 1 159 SER 159 1138 1138 SER SER A . n A 1 160 SER 160 1139 1139 SER SER A . n A 1 161 GLY 161 1140 1140 GLY GLY A . n A 1 162 GLY 162 1141 1141 GLY GLY A . n A 1 163 PRO 163 1142 1142 PRO PRO A . n A 1 164 LEU 164 1143 1143 LEU LEU A . n A 1 165 LEU 165 1144 1144 LEU LEU A . n A 1 166 CYS 166 1145 1145 CYS CYS A . n A 1 167 PRO 167 1146 1146 PRO PRO A . n A 1 168 ALA 168 1147 1147 ALA ALA A . n A 1 169 GLY 169 1148 1148 GLY GLY A . n A 1 170 HIS 170 1149 1149 HIS HIS A . n A 1 171 ALA 171 1150 1150 ALA ALA A . n A 1 172 VAL 172 1151 1151 VAL VAL A . n A 1 173 GLY 173 1152 1152 GLY GLY A . n A 1 174 ILE 174 1153 1153 ILE ILE A . n A 1 175 PHE 175 1154 1154 PHE PHE A . n A 1 176 ARG 176 1155 1155 ARG ARG A . n A 1 177 ALA 177 1156 1156 ALA ALA A . n A 1 178 ALA 178 1157 1157 ALA ALA A . n A 1 179 VAL 179 1158 1158 VAL VAL A . n A 1 180 SER 180 1159 1159 SER SER A . n A 1 181 THR 181 1160 1160 THR THR A . n A 1 182 ARG 182 1161 1161 ARG ARG A . n A 1 183 GLY 183 1162 1162 GLY GLY A . n A 1 184 VAL 184 1163 1163 VAL VAL A . n A 1 185 ALA 185 1164 1164 ALA ALA A . n A 1 186 LYS 186 1165 1165 LYS LYS A . n A 1 187 ALA 187 1166 1166 ALA ALA A . n A 1 188 VAL 188 1167 1167 VAL VAL A . n A 1 189 ALA 189 1168 1168 ALA ALA A . n A 1 190 PHE 190 1169 1169 PHE PHE A . n A 1 191 ILE 191 1170 1170 ILE ILE A . n A 1 192 PRO 192 1171 1171 PRO PRO A . n A 1 193 VAL 193 1172 1172 VAL VAL A . n A 1 194 GLU 194 1173 1173 GLU GLU A . n A 1 195 SER 195 1174 1174 SER SER A . n A 1 196 LEU 196 1175 1175 LEU LEU A . n A 1 197 GLU 197 1176 1176 GLU GLU A . n A 1 198 THR 198 1177 1177 THR THR A . n A 1 199 THR 199 1178 1178 THR THR A . n A 1 200 MET 200 1179 1179 MET MET A . n A 1 201 ARG 201 1180 1180 ARG ARG A . n A 1 202 SER 202 1181 1181 SER SER A . n A 1 203 PRO 203 1182 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SV6 1 1 1 SV6 SV6 A . C 3 GOL 1 2 2 GOL GOL A . D 4 ZN 1 3 3 ZN ZN A . E 5 HOH 1 11 11 HOH HOH A . E 5 HOH 2 12 12 HOH HOH A . E 5 HOH 3 13 13 HOH HOH A . E 5 HOH 4 14 14 HOH HOH A . E 5 HOH 5 15 15 HOH HOH A . E 5 HOH 6 16 16 HOH HOH A . E 5 HOH 7 17 17 HOH HOH A . E 5 HOH 8 18 18 HOH HOH A . E 5 HOH 9 19 19 HOH HOH A . E 5 HOH 10 20 20 HOH HOH A . E 5 HOH 11 21 21 HOH HOH A . E 5 HOH 12 22 22 HOH HOH A . E 5 HOH 13 23 23 HOH HOH A . E 5 HOH 14 24 24 HOH HOH A . E 5 HOH 15 25 25 HOH HOH A . E 5 HOH 16 26 26 HOH HOH A . E 5 HOH 17 27 27 HOH HOH A . E 5 HOH 18 28 28 HOH HOH A . E 5 HOH 19 29 29 HOH HOH A . E 5 HOH 20 30 30 HOH HOH A . E 5 HOH 21 31 31 HOH HOH A . E 5 HOH 22 32 32 HOH HOH A . E 5 HOH 23 33 33 HOH HOH A . E 5 HOH 24 34 34 HOH HOH A . E 5 HOH 25 35 35 HOH HOH A . E 5 HOH 26 36 36 HOH HOH A . E 5 HOH 27 37 37 HOH HOH A . E 5 HOH 28 38 38 HOH HOH A . E 5 HOH 29 39 39 HOH HOH A . E 5 HOH 30 40 40 HOH HOH A . E 5 HOH 31 41 41 HOH HOH A . E 5 HOH 32 42 42 HOH HOH A . E 5 HOH 33 43 43 HOH HOH A . E 5 HOH 34 44 44 HOH HOH A . E 5 HOH 35 45 45 HOH HOH A . E 5 HOH 36 46 46 HOH HOH A . E 5 HOH 37 47 47 HOH HOH A . E 5 HOH 38 48 48 HOH HOH A . E 5 HOH 39 49 49 HOH HOH A . E 5 HOH 40 50 50 HOH HOH A . E 5 HOH 41 51 51 HOH HOH A . E 5 HOH 42 52 52 HOH HOH A . E 5 HOH 43 53 53 HOH HOH A . E 5 HOH 44 54 54 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 53 ? 1_555 ZN ? D ZN . ? A ZN 3 ? 1_555 SG ? A CYS 120 ? A CYS 1099 ? 1_555 114.1 ? 2 O ? E HOH . ? A HOH 53 ? 1_555 ZN ? D ZN . ? A ZN 3 ? 1_555 SG ? A CYS 118 ? A CYS 1097 ? 1_555 130.3 ? 3 SG ? A CYS 120 ? A CYS 1099 ? 1_555 ZN ? D ZN . ? A ZN 3 ? 1_555 SG ? A CYS 118 ? A CYS 1097 ? 1_555 94.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-05 2 'Structure model' 1 1 2017-08-23 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' software 3 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -20.0322 7.2688 -1.4529 0.1543 0.4615 0.5266 -0.0453 -0.0430 0.1043 3.0816 2.7689 7.3667 1.6245 -1.3708 2.8705 -0.1177 -0.0864 0.2041 -0.1831 0.0340 0.1537 -0.0754 0.0610 0.0354 'X-RAY DIFFRACTION' 2 ? refined -22.0524 25.4189 -6.7107 0.3810 0.3055 0.2610 -0.0360 -0.1010 0.0163 3.9985 5.3799 2.7775 0.1455 -3.0055 -1.4614 -0.1186 0.0796 0.0390 0.1010 -0.0462 0.5176 -0.4146 -0.0115 -0.0208 'X-RAY DIFFRACTION' 3 ? refined -26.4574 5.7974 1.0428 0.5324 0.3783 0.6130 0.0157 0.0475 0.0455 2.1334 7.2527 0.0530 3.8037 -0.2507 -0.5521 0.3540 -0.2856 -0.0684 -0.2605 -0.1550 0.2168 0.5965 -0.0376 -0.0088 'X-RAY DIFFRACTION' 4 ? refined -23.6918 9.3621 -8.5214 0.2465 0.3078 0.5763 -0.0045 -0.0714 -0.0522 7.4022 1.5903 7.1186 2.2379 -1.6636 -2.9803 0.0508 0.1726 -0.2235 0.3903 -0.0375 0.1232 -0.1200 0.2835 -0.0566 'X-RAY DIFFRACTION' 5 ? refined -18.1305 10.9763 1.1088 0.2940 0.3121 0.4992 0.0311 -0.0148 -0.0351 4.7019 8.2475 2.0221 -1.5637 2.4468 1.5679 -0.6146 0.4328 0.1817 -0.6338 -0.0277 0.1298 0.7057 -0.2167 -0.3041 'X-RAY DIFFRACTION' 6 ? refined -12.4084 13.7983 -4.5036 0.3616 0.3169 0.3356 0.0250 -0.0587 0.0381 3.4877 3.5586 1.2720 -0.0888 0.8444 1.9256 -0.1922 0.0817 0.1105 -0.1125 -0.1836 0.2940 -0.0187 -0.0360 0.0154 'X-RAY DIFFRACTION' 7 ? refined -8.1099 9.2906 -0.9697 0.3093 0.2863 0.2867 -0.0275 -0.0137 0.0027 2.7111 5.4747 0.4905 -0.0235 0.3586 -0.9850 0.1745 -0.0657 -0.1088 -0.0229 -0.6527 0.2878 -0.0175 0.2940 -0.1005 'X-RAY DIFFRACTION' 8 ? refined -14.9233 2.0167 -3.4272 0.3994 0.2820 0.3873 -0.0179 -0.0419 -0.0037 9.1353 8.1026 0.9893 2.5182 -0.0516 2.6864 0.3445 -0.4455 0.1010 -0.2962 -0.4477 0.1709 0.3635 0.1372 -0.1295 'X-RAY DIFFRACTION' 9 ? refined -9.0028 3.4623 -7.5028 0.4116 0.2699 0.3596 0.0097 -0.0822 -0.0059 6.1577 3.3235 2.6803 1.9455 2.0577 0.4487 -0.0053 0.1107 -0.1054 0.1003 -0.4182 -0.0120 -0.5288 0.1821 -0.1731 'X-RAY DIFFRACTION' 10 ? refined -8.0402 7.8025 -5.7784 0.2137 0.3371 0.2365 0.0801 0.0187 -0.0225 15.6954 5.8910 18.7324 3.2563 13.6666 -2.3072 0.4604 0.3222 -0.7826 0.6977 -0.4631 -0.1376 -0.1788 0.2773 0.0666 'X-RAY DIFFRACTION' 11 ? refined -17.1256 12.8887 -14.2148 0.3271 0.4442 0.5678 0.0174 -0.1053 0.0298 16.0665 16.9000 6.6236 10.8176 -4.0901 4.5612 -0.3715 0.1508 0.2207 0.8860 0.0837 0.5846 -0.6784 -0.2924 -0.5243 'X-RAY DIFFRACTION' 12 ? refined -4.7907 27.8681 -7.7451 0.3338 0.3553 0.2339 0.0145 0.0044 0.0173 4.1658 4.3102 0.8802 2.2393 -0.1322 -0.9081 0.1305 0.0384 -0.1689 0.1653 0.0729 -0.0120 -0.3450 -0.1862 0.1804 'X-RAY DIFFRACTION' 13 ? refined -17.9945 23.4426 2.4857 0.4221 0.3027 0.2635 0.0342 0.0872 0.0306 42.7846 10.6978 2.7588 -2.5271 8.3623 2.9497 -0.3843 0.4528 -0.0685 -0.5512 -1.2430 0.4901 1.4587 0.3836 0.0118 'X-RAY DIFFRACTION' 14 ? refined -5.6665 30.5988 0.6379 0.2587 0.3205 0.3023 -0.0352 -0.0628 -0.0033 9.8843 2.2666 4.7203 2.1918 6.0842 0.2525 -0.1351 0.0157 0.1194 0.2247 0.4517 -0.1199 0.3369 -0.2399 0.1570 'X-RAY DIFFRACTION' 15 ? refined -1.4866 28.4504 4.9628 0.3221 0.3360 0.2867 -0.0157 0.0306 -0.0155 1.2242 10.1495 2.4041 1.5414 1.0020 -0.0442 -0.1206 -0.0101 0.1307 0.2192 -0.0948 0.0813 0.3162 -0.2566 -0.0365 'X-RAY DIFFRACTION' 16 ? refined -13.5274 24.1458 10.9119 0.3265 0.3860 0.3820 0.0251 0.0207 0.0202 10.8450 3.2976 20.0062 0.0028 6.9189 7.1722 -0.2420 0.0137 0.2284 -0.1641 -0.3268 0.2003 0.0204 -0.1248 -0.0951 'X-RAY DIFFRACTION' 17 ? refined -9.5478 23.9326 -3.6138 0.2954 0.3390 0.2885 -0.0041 -0.0146 0.0030 0.2650 12.0746 5.6838 0.4372 -0.4381 -8.0406 0.1474 -0.0853 -0.0621 -0.0249 0.0355 -0.2257 -0.1712 -0.0393 -0.0819 'X-RAY DIFFRACTION' 18 ? refined -5.1949 21.0358 1.0954 0.2512 0.2611 0.2389 -0.0152 0.0134 -0.0087 5.1151 2.1291 5.2569 -0.9105 5.0935 -0.3065 0.1407 -0.0605 -0.0802 0.0236 -0.0740 0.0291 0.0253 0.1363 0.0089 'X-RAY DIFFRACTION' 19 ? refined -3.6908 22.8607 6.5441 0.3024 0.3542 0.2722 -0.0761 0.0164 -0.0396 3.3656 2.3904 0.6932 -0.9072 -1.1023 -0.5421 0.0569 0.0153 -0.0722 -0.4934 0.1177 -0.0446 0.3057 -0.1660 0.2248 'X-RAY DIFFRACTION' 20 ? refined 0.7878 14.0184 -10.1857 0.4372 0.3967 0.2990 -0.1001 0.0126 -0.0256 12.9739 2.5704 0.2763 0.7355 -1.3743 0.4863 -0.6830 0.7075 -0.0245 0.7258 0.4240 0.0890 -0.8240 -0.1286 0.0421 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 989 A 997 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 998 A 1008 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 1009 A 1021 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 1022 A 1032 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 1033 A 1040 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 1041 A 1051 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 1052 A 1060 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 1061 A 1066 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 1067 A 1080 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 1081 A 1086 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 A 1087 A 1093 ? . . . . ? 'X-RAY DIFFRACTION' 12 12 A 1094 A 1106 ? . . . . ? 'X-RAY DIFFRACTION' 13 13 A 1107 A 1112 ? . . . . ? 'X-RAY DIFFRACTION' 14 14 A 1113 A 1118 ? . . . . ? 'X-RAY DIFFRACTION' 15 15 A 1119 A 1129 ? . . . . ? 'X-RAY DIFFRACTION' 16 16 A 1130 A 1136 ? . . . . ? 'X-RAY DIFFRACTION' 17 17 A 1137 A 1148 ? . . . . ? 'X-RAY DIFFRACTION' 18 18 A 1149 A 1159 ? . . . . ? 'X-RAY DIFFRACTION' 19 19 A 1160 A 1172 ? . . . . ? 'X-RAY DIFFRACTION' 20 20 A 1173 A 1179 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _pdbx_entry_details.sequence_details ;THE COFACTOR 4A RESIDUES 986-1000 (MET LYS LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ASN LEU) IN THIS ENTRY CORRESPOND TO RESIDUES NUMBERING 1674-1688 OF DATABASE SEQUENCE REFERENCE (UNP A8DG50). THIS PEPTIDE IS COVALENTLY LINKED TO THE N-TERMINUS OF NS3. C1679S MUTATION WAS ENGINEERED TO PREVENT DISULFIDE FORMATION. THE V1686I AND I1687N WERE ENGINEERED TO OPTIMIZE THE LINKER BETWEEN THE COFACTOR 4A AND NS3. ; _pdbx_entry_details.entry_id 3SV8 _pdbx_entry_details.nonpolymer_details ;TELAPREVIR IS A LINEAR, PEPTIDOMIMETIC HCV NS3/4A PROTEASE INHIBITOR FROM VERTEX. TELAPREVIR WAS FDA APPROVED FOR CLINICAL USE IN HUMANS. THE DRUG MIMICS THE PEPTIDE BACKBONE OF PROTEINS, ALTHOUGH THE DRUG MOIETIES CANNOT BE SEQUENCED USING AMINO ACID NOMENCLATURE ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 1145 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 1145 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.695 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.117 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 997 ? ? -171.29 142.53 2 1 THR A 1038 ? ? -102.45 -162.69 3 1 CYS A 1145 ? ? -37.78 158.02 4 1 ARG A 1180 ? ? -102.10 47.40 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LEU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 1144 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 CYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 1145 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 989 ? CG ? A LYS 10 CG 2 1 Y 1 A LYS 989 ? CD ? A LYS 10 CD 3 1 Y 1 A LYS 989 ? CE ? A LYS 10 CE 4 1 Y 1 A LYS 989 ? NZ ? A LYS 10 NZ 5 1 Y 1 A GLN 1009 ? CG ? A GLN 30 CG 6 1 Y 1 A GLN 1009 ? CD ? A GLN 30 CD 7 1 Y 1 A GLN 1009 ? OE1 ? A GLN 30 OE1 8 1 Y 1 A GLN 1009 ? NE2 ? A GLN 30 NE2 9 1 Y 1 A GLU 1013 ? CG ? A GLU 34 CG 10 1 Y 1 A GLU 1013 ? CD ? A GLU 34 CD 11 1 Y 1 A GLU 1013 ? OE1 ? A GLU 34 OE1 12 1 Y 1 A GLU 1013 ? OE2 ? A GLU 34 OE2 13 1 Y 1 A GLU 1014 ? CG ? A GLU 35 CG 14 1 Y 1 A GLU 1014 ? CD ? A GLU 35 CD 15 1 Y 1 A GLU 1014 ? OE1 ? A GLU 35 OE1 16 1 Y 1 A GLU 1014 ? OE2 ? A GLU 35 OE2 17 1 Y 1 A GLN 1017 ? CG ? A GLN 38 CG 18 1 Y 1 A GLN 1017 ? CD ? A GLN 38 CD 19 1 Y 1 A GLN 1017 ? OE1 ? A GLN 38 OE1 20 1 Y 1 A GLN 1017 ? NE2 ? A GLN 38 NE2 21 1 Y 1 A GLU 1018 ? CG ? A GLU 39 CG 22 1 Y 1 A GLU 1018 ? CD ? A GLU 39 CD 23 1 Y 1 A GLU 1018 ? OE1 ? A GLU 39 OE1 24 1 Y 1 A GLU 1018 ? OE2 ? A GLU 39 OE2 25 1 Y 1 A GLN 1028 ? CG ? A GLN 49 CG 26 1 Y 1 A GLN 1028 ? CD ? A GLN 49 CD 27 1 Y 1 A GLN 1028 ? OE1 ? A GLN 49 OE1 28 1 Y 1 A GLN 1028 ? NE2 ? A GLN 49 NE2 29 1 Y 1 A LYS 1080 ? CG ? A LYS 101 CG 30 1 Y 1 A LYS 1080 ? CD ? A LYS 101 CD 31 1 Y 1 A LYS 1080 ? CE ? A LYS 101 CE 32 1 Y 1 A LYS 1080 ? NZ ? A LYS 101 NZ 33 1 Y 1 A ASP 1121 ? CG ? A ASP 142 CG 34 1 Y 1 A ASP 1121 ? OD1 ? A ASP 142 OD1 35 1 Y 1 A ASP 1121 ? OD2 ? A ASP 142 OD2 36 1 Y 1 A ARG 1180 ? CG ? A ARG 201 CG 37 1 Y 1 A ARG 1180 ? CD ? A ARG 201 CD 38 1 Y 1 A ARG 1180 ? NE ? A ARG 201 NE 39 1 Y 1 A ARG 1180 ? CZ ? A ARG 201 CZ 40 1 Y 1 A ARG 1180 ? NH1 ? A ARG 201 NH1 41 1 Y 1 A ARG 1180 ? NH2 ? A ARG 201 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 980 ? A GLY 1 2 1 Y 1 A SER 981 ? A SER 2 3 1 Y 1 A HIS 982 ? A HIS 3 4 1 Y 1 A MET 983 ? A MET 4 5 1 Y 1 A ALA 984 ? A ALA 5 6 1 Y 1 A SER 985 ? A SER 6 7 1 Y 1 A MET 986 ? A MET 7 8 1 Y 1 A LYS 987 ? A LYS 8 9 1 Y 1 A LYS 988 ? A LYS 9 10 1 Y 1 A PRO 1182 ? A PRO 203 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide ; SV6 3 GLYCEROL GOL 4 'ZINC ION' ZN 5 water HOH #