HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 12-JUL-11 3SV9 TITLE CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH TITLE 2 TELAPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEASE, NS4A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NS4A (UNP RESIDUES 1674-1688), NS3 (UNP RESIDUES 1027- COMPND 5 1208); COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 31646; SOURCE 4 STRAIN: SUBTYPE 1A, BID-V318; SOURCE 5 GENE: NS3-NS4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DRUG RESISTANCE, DRUG DESIGN, PROTEASE INHIBITORS, SERINE PROTEASE, KEYWDS 2 HYDROLASE, VIRAL PROTEIN, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SCHIFFER,K.P.ROMANO REVDAT 4 28-FEB-24 3SV9 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3SV9 1 REMARK REVDAT 2 23-AUG-17 3SV9 1 SOURCE REMARK REVDAT 1 05-SEP-12 3SV9 0 JRNL AUTH K.P.ROMANO,A.ALI,C.AYDIN,D.SOUMANA,A.OZEN,L.M.DEVEAU, JRNL AUTH 2 C.SILVER,H.CAO,A.NEWTON,C.J.PETROPOULOS,W.HUANG,C.A.SCHIFFER JRNL TITL THE MOLECULAR BASIS OF DRUG RESISTANCE AGAINST HEPATITIS C JRNL TITL 2 VIRUS NS3/4A PROTEASE INHIBITORS. JRNL REF PLOS PATHOG. V. 8 02832 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 22910833 JRNL DOI 10.1371/JOURNAL.PPAT.1002832 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33000 REMARK 3 B22 (A**2) : -1.70000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1531 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1002 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2094 ; 1.314 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2394 ; 0.843 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;31.751 ;22.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;12.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.357 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 249 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1707 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 295 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 995 ; 0.637 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 412 ; 0.167 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1601 ; 1.162 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 536 ; 1.721 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 488 ; 2.776 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 982 A 987 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2767 -22.7134 -4.4087 REMARK 3 T TENSOR REMARK 3 T11: 0.5393 T22: 0.2133 REMARK 3 T33: 0.3520 T12: -0.1381 REMARK 3 T13: -0.0847 T23: 0.2530 REMARK 3 L TENSOR REMARK 3 L11: 19.7819 L22: 51.4765 REMARK 3 L33: 15.6561 L12: 3.0790 REMARK 3 L13: -9.5954 L23: 10.4885 REMARK 3 S TENSOR REMARK 3 S11: 1.7451 S12: -1.6647 S13: -1.3529 REMARK 3 S21: -2.3889 S22: -1.0571 S23: -0.6916 REMARK 3 S31: -0.3706 S32: -0.5466 S33: -0.6879 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 988 A 995 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1832 -9.5745 11.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.1353 REMARK 3 T33: 0.0934 T12: -0.0061 REMARK 3 T13: 0.0251 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.4883 L22: 4.4422 REMARK 3 L33: 2.9240 L12: 0.4209 REMARK 3 L13: -1.9415 L23: 0.3719 REMARK 3 S TENSOR REMARK 3 S11: -0.2000 S12: 0.1840 S13: -0.0600 REMARK 3 S21: -0.3614 S22: 0.0890 S23: -0.0487 REMARK 3 S31: 0.1443 S32: 0.1141 S33: 0.1110 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 996 A 1008 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7399 5.9220 26.4446 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.1472 REMARK 3 T33: 0.1283 T12: -0.0192 REMARK 3 T13: 0.0129 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 3.7627 L22: 4.1997 REMARK 3 L33: 1.7193 L12: 0.1795 REMARK 3 L13: -0.7991 L23: -0.3026 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.4770 S13: 0.3223 REMARK 3 S21: 0.6424 S22: -0.0484 S23: -0.0271 REMARK 3 S31: -0.1829 S32: 0.2016 S33: 0.0497 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1009 A 1017 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8576 0.5196 11.1748 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1326 REMARK 3 T33: 0.1291 T12: 0.0195 REMARK 3 T13: 0.0365 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.7243 L22: 9.3725 REMARK 3 L33: 3.4602 L12: -0.9032 REMARK 3 L13: -2.0746 L23: 4.6520 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: -0.0724 S13: 0.0310 REMARK 3 S21: -0.4386 S22: 0.0292 S23: -0.1981 REMARK 3 S31: -0.0318 S32: 0.1406 S33: 0.0256 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1018 A 1027 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2822 -7.2940 11.6996 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.0927 REMARK 3 T33: 0.1260 T12: 0.0074 REMARK 3 T13: 0.0765 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 4.6288 L22: 7.4512 REMARK 3 L33: 12.1486 L12: -0.5643 REMARK 3 L13: 1.2004 L23: 2.5340 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.1146 S13: 0.1022 REMARK 3 S21: -0.3731 S22: -0.1550 S23: -0.2785 REMARK 3 S31: -0.1437 S32: 0.2745 S33: 0.1457 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1028 A 1033 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9831 -1.7108 26.1655 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.0629 REMARK 3 T33: 0.1265 T12: -0.0354 REMARK 3 T13: -0.0181 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 21.4048 L22: 4.5750 REMARK 3 L33: 5.4606 L12: 3.1789 REMARK 3 L13: -5.5889 L23: 0.0275 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.3658 S13: 0.4643 REMARK 3 S21: 0.1911 S22: -0.0651 S23: -0.3597 REMARK 3 S31: -0.2208 S32: 0.2559 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1034 A 1042 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3603 -5.2118 12.9872 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.1262 REMARK 3 T33: 0.0857 T12: 0.0090 REMARK 3 T13: 0.0113 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.3199 L22: 3.9425 REMARK 3 L33: 11.1259 L12: -1.0740 REMARK 3 L13: 0.5360 L23: -0.5694 REMARK 3 S TENSOR REMARK 3 S11: 0.2500 S12: 0.1986 S13: -0.0893 REMARK 3 S21: -0.3423 S22: -0.1157 S23: -0.0317 REMARK 3 S31: 0.3000 S32: -0.4119 S33: -0.1343 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1043 A 1061 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0002 -11.8449 21.4769 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.0888 REMARK 3 T33: 0.0878 T12: 0.0067 REMARK 3 T13: -0.0003 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.2223 L22: 1.1525 REMARK 3 L33: 0.3331 L12: -0.2442 REMARK 3 L13: -0.5228 L23: 0.5119 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.0189 S13: -0.0434 REMARK 3 S21: -0.0005 S22: -0.0392 S23: -0.0140 REMARK 3 S31: -0.0058 S32: -0.0028 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1062 A 1077 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3740 -16.2324 18.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.0920 REMARK 3 T33: 0.1168 T12: 0.0161 REMARK 3 T13: 0.0037 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.3822 L22: 1.9518 REMARK 3 L33: 1.2735 L12: 1.2388 REMARK 3 L13: -0.7756 L23: -0.3557 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0892 S13: -0.1041 REMARK 3 S21: -0.0793 S22: -0.1007 S23: -0.1756 REMARK 3 S31: 0.0781 S32: 0.1255 S33: 0.0695 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1078 A 1094 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3189 -13.5614 24.0743 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.0911 REMARK 3 T33: 0.1010 T12: 0.0098 REMARK 3 T13: -0.0039 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.7422 L22: 1.8829 REMARK 3 L33: 1.9979 L12: 0.8208 REMARK 3 L13: 0.6959 L23: 1.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: -0.0609 S13: -0.0623 REMARK 3 S21: 0.0687 S22: -0.1195 S23: -0.0589 REMARK 3 S31: 0.0349 S32: 0.0395 S33: 0.0693 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1095 A 1106 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8095 -5.3929 35.8044 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.1449 REMARK 3 T33: 0.0854 T12: -0.0108 REMARK 3 T13: 0.0227 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 2.8422 L22: 1.4909 REMARK 3 L33: 2.7651 L12: -0.6124 REMARK 3 L13: -0.5262 L23: -1.5194 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.2973 S13: 0.2435 REMARK 3 S21: 0.0804 S22: -0.0671 S23: 0.0208 REMARK 3 S31: -0.0164 S32: 0.0954 S33: 0.0193 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1107 A 1112 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0759 3.2437 20.9136 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0926 REMARK 3 T33: 0.1786 T12: 0.0199 REMARK 3 T13: 0.0146 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 7.3802 L22: 4.8641 REMARK 3 L33: 15.5311 L12: 4.5565 REMARK 3 L13: -4.2286 L23: -2.9284 REMARK 3 S TENSOR REMARK 3 S11: 0.1360 S12: 0.1259 S13: 0.5295 REMARK 3 S21: -0.3551 S22: -0.0185 S23: 0.3889 REMARK 3 S31: -0.1153 S32: 0.2122 S33: -0.1176 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1113 A 1122 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2139 -4.8474 30.1116 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.1192 REMARK 3 T33: 0.0941 T12: 0.0042 REMARK 3 T13: 0.0267 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.1584 L22: 2.6662 REMARK 3 L33: 1.3809 L12: 0.7204 REMARK 3 L13: -1.3678 L23: -1.1872 REMARK 3 S TENSOR REMARK 3 S11: 0.1394 S12: -0.0258 S13: 0.2298 REMARK 3 S21: 0.0748 S22: -0.0156 S23: 0.0043 REMARK 3 S31: -0.0601 S32: -0.0235 S33: -0.1238 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1123 A 1129 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2672 -1.4613 25.4801 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1361 REMARK 3 T33: 0.1264 T12: 0.0416 REMARK 3 T13: -0.0012 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.1349 L22: 9.9592 REMARK 3 L33: 3.4072 L12: -4.7168 REMARK 3 L13: 1.7222 L23: -6.6984 REMARK 3 S TENSOR REMARK 3 S11: 0.3225 S12: 0.1586 S13: 0.0116 REMARK 3 S21: -0.3317 S22: -0.1217 S23: 0.3303 REMARK 3 S31: 0.0948 S32: 0.0163 S33: -0.2007 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1130 A 1140 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6273 0.8587 16.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1372 REMARK 3 T33: 0.1275 T12: 0.0243 REMARK 3 T13: 0.0084 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 13.7321 L22: 9.5565 REMARK 3 L33: 4.2376 L12: -9.6844 REMARK 3 L13: 5.5875 L23: -6.6086 REMARK 3 S TENSOR REMARK 3 S11: -0.2294 S12: -0.0147 S13: 0.4271 REMARK 3 S21: 0.2882 S22: 0.2772 S23: -0.1576 REMARK 3 S31: -0.2027 S32: -0.1914 S33: -0.0478 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1141 A 1149 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3937 -3.6429 33.5832 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.1331 REMARK 3 T33: 0.1178 T12: -0.0099 REMARK 3 T13: 0.0310 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 3.8851 L22: 1.4729 REMARK 3 L33: 14.2857 L12: 0.4018 REMARK 3 L13: -3.8480 L23: 3.6240 REMARK 3 S TENSOR REMARK 3 S11: 0.2197 S12: -0.2400 S13: 0.3394 REMARK 3 S21: 0.0320 S22: -0.0122 S23: 0.0865 REMARK 3 S31: -0.0535 S32: 0.1724 S33: -0.2075 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1150 A 1155 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6088 -9.1906 25.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.1155 REMARK 3 T33: 0.1038 T12: -0.0263 REMARK 3 T13: 0.0119 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 4.1923 L22: 0.8292 REMARK 3 L33: 7.2869 L12: -2.4226 REMARK 3 L13: -0.0256 L23: -1.3123 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.1165 S13: 0.1045 REMARK 3 S21: -0.0477 S22: -0.1368 S23: -0.0401 REMARK 3 S31: 0.2769 S32: 0.0284 S33: 0.1660 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1156 A 1162 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6600 -4.9091 15.8658 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.3775 REMARK 3 T33: 0.1189 T12: 0.0009 REMARK 3 T13: -0.0171 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 8.9402 L22: 6.1936 REMARK 3 L33: 8.7539 L12: 0.1280 REMARK 3 L13: 6.3331 L23: -6.5643 REMARK 3 S TENSOR REMARK 3 S11: 0.2131 S12: 0.6711 S13: -0.4986 REMARK 3 S21: -0.2726 S22: 0.4141 S23: 0.5864 REMARK 3 S31: 0.5505 S32: -0.1387 S33: -0.6272 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1163 A 1170 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8119 -6.7830 22.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.1518 REMARK 3 T33: 0.0935 T12: 0.0311 REMARK 3 T13: 0.0026 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 5.0594 L22: 3.0672 REMARK 3 L33: 2.4069 L12: -2.5622 REMARK 3 L13: 1.2266 L23: -2.4931 REMARK 3 S TENSOR REMARK 3 S11: 0.1127 S12: 0.2119 S13: -0.1459 REMARK 3 S21: -0.0212 S22: 0.0612 S23: 0.2195 REMARK 3 S31: -0.0531 S32: -0.1356 S33: -0.1738 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1171 A 1179 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6973 -17.8200 31.3271 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.1258 REMARK 3 T33: 0.1027 T12: -0.0135 REMARK 3 T13: -0.0110 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 11.4819 L22: 5.5000 REMARK 3 L33: 3.8437 L12: -4.5403 REMARK 3 L13: -4.7429 L23: -1.0603 REMARK 3 S TENSOR REMARK 3 S11: -0.3543 S12: -0.5155 S13: -0.4998 REMARK 3 S21: 0.1527 S22: 0.1294 S23: 0.1865 REMARK 3 S31: 0.2175 S32: 0.1717 S33: 0.2248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3SV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 3350, 0.1M MES (PH 6.5), 4% REMARK 280 AMMONIUM SULFATE, HANGING DROP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 295K, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.41850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.36300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.33800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.36300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.41850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.33800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 980 REMARK 465 SER A 981 REMARK 465 SER A 1181 REMARK 465 PRO A 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 987 CG CD CE NZ REMARK 470 LYS A 988 CG CD CE NZ REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 ARG A1024 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1165 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 1149 O HOH A 128 2.03 REMARK 500 OG SER A 1139 CAI SV6 A 1 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1109 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 TELAPREVIR IS A LINEAR, PEPTIDOMIMETIC HCV NS3/4A PROTEASE REMARK 600 INHIBITOR FROM VERTEX. TELAPREVIR WAS FDA APPROVED FOR CLINICAL USE REMARK 600 IN HUMANS. THE DRUG MIMICS THE PEPTIDE BACKBONE OF PROTEINS, REMARK 600 ALTHOUGH THE DRUG MOIETIES CANNOT BE SEQUENCED USING AMINO ACID REMARK 600 NOMENCLATURE. THE A156T MUTATION STERICALLY HINDERS THE EFFICIENT REMARK 600 BINDING OF TELAPREVIR. THUS THE ELECTRON DENSITY FOR TELAPREVIR IS REMARK 600 SUBOPTIMAL IN SECTIONS, MOST NOTABLY AT THE CYCLOHEXYL AND PYRAZINE REMARK 600 DRUG MOIETIES. THIS OBSERVATION EXPLAINS THE HIGH REAL SPACE R- REMARK 600 VALUE OF THIS DATASET, AND IS ALSO CONSISTENT WITH THE AUTHORS REMARK 600 MOLECULAR INTERPRETATIONS. THE A156T MUTATION CONFERS DRAMATIC REMARK 600 TELAPREVIR RESISTANCE DUE TO DIRECT STERIC EFFECTS IMPEDING BINDING REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 128 O REMARK 620 2 CYS A1097 SG 113.3 REMARK 620 3 CYS A1099 SG 106.4 91.4 REMARK 620 4 CYS A1145 SG 116.7 114.0 111.9 REMARK 620 N 1 2 3 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (1S,3AR,6AS)-2-[(2S)-2-({(2S)-2-CYCLOHEXYL-2- REMARK 630 [(PYRAZIN-2-YLCARBONYL)AMINO]ACETYL}AMINO)-3,3-DIMETHYLBUTANOYL]-N- REMARK 630 [(2R,3S)-1-(CYCLOPROPYLAMINO)-2-HYDROXY-1-OXOHEXAN-3-YL] REMARK 630 OCTAHYDROCYCLOPENTA[C]PYRROLE-1-CARBOXAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 SV6 A 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: VGL CHG TBG 037 03A REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SV6 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SU3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH VANIPREVIR REMARK 900 RELATED ID: 3SU4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SU6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 VANIPREVIR REMARK 900 RELATED ID: 3SUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH MK-5172 REMARK 900 RELATED ID: 3SUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SUG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT A156T IN COMPLEX WITH REMARK 900 MK-5172 REMARK 900 RELATED ID: 3SV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE IN COMPLEX WITH TELAPREVIR REMARK 900 RELATED ID: 3SV7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT R155K IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 900 RELATED ID: 3SV8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NS3/4A PROTEASE VARIANT D168A IN COMPLEX WITH REMARK 900 TELAPREVIR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COFACTOR 4A RESIDUES 986-1000 (MET LYS LYS LYS GLY SER VAL VAL REMARK 999 ILE VAL GLY ARG ILE ASN LEU) IN THIS ENTRY CORRESPOND TO RESIDUES REMARK 999 NUMBERING 1674-1688 OF DATABASE SEQUENCE REFERENCE (UNP A8DG50). REMARK 999 THIS PEPTIDE IS COVALENTLY LINKED TO THE N-TERMINUS OF NS3. C1679S REMARK 999 MUTATION WAS ENGINEERED TO PREVENT DISULFIDE FORMATION. THE V1686I REMARK 999 AND I1687N WERE ENGINEERED TO OPTIMIZE THE LINKER BETWEEN THE REMARK 999 COFACTOR 4A AND NS3. DBREF 3SV9 A 986 1000 UNP A8DG50 A8DG50_9HEPC 1674 1688 DBREF 3SV9 A 1001 1182 UNP A8DG50 A8DG50_9HEPC 1027 1208 SEQADV 3SV9 GLY A 980 UNP A8DG50 EXPRESSION TAG SEQADV 3SV9 SER A 981 UNP A8DG50 EXPRESSION TAG SEQADV 3SV9 HIS A 982 UNP A8DG50 EXPRESSION TAG SEQADV 3SV9 MET A 983 UNP A8DG50 EXPRESSION TAG SEQADV 3SV9 ALA A 984 UNP A8DG50 EXPRESSION TAG SEQADV 3SV9 SER A 985 UNP A8DG50 EXPRESSION TAG SEQADV 3SV9 MET A 986 UNP A8DG50 CYS 1674 ENGINEERED MUTATION SEQADV 3SV9 LYS A 987 UNP A8DG50 LEU 1675 ENGINEERED MUTATION SEQADV 3SV9 LYS A 988 UNP A8DG50 SER 1676 ENGINEERED MUTATION SEQADV 3SV9 LYS A 989 UNP A8DG50 THR 1677 ENGINEERED MUTATION SEQADV 3SV9 SER A 991 UNP A8DG50 CYS 1679 SEE REMARK 999 SEQADV 3SV9 ILE A 998 UNP A8DG50 VAL 1686 SEE REMARK 999 SEQADV 3SV9 ASN A 999 UNP A8DG50 ILE 1687 SEE REMARK 999 SEQADV 3SV9 SER A 1001 UNP A8DG50 ALA 1027 ENGINEERED MUTATION SEQADV 3SV9 GLY A 1002 UNP A8DG50 PRO 1028 ENGINEERED MUTATION SEQADV 3SV9 ASP A 1003 UNP A8DG50 ILE 1029 ENGINEERED MUTATION SEQADV 3SV9 GLU A 1013 UNP A8DG50 LEU 1039 ENGINEERED MUTATION SEQADV 3SV9 GLU A 1014 UNP A8DG50 LEU 1040 ENGINEERED MUTATION SEQADV 3SV9 GLN A 1017 UNP A8DG50 ILE 1043 ENGINEERED MUTATION SEQADV 3SV9 GLU A 1018 UNP A8DG50 ILE 1044 ENGINEERED MUTATION SEQADV 3SV9 GLN A 1021 UNP A8DG50 LEU 1047 ENGINEERED MUTATION SEQADV 3SV9 THR A 1040 UNP A8DG50 ALA 1066 ENGINEERED MUTATION SEQADV 3SV9 SER A 1047 UNP A8DG50 CYS 1073 ENGINEERED MUTATION SEQADV 3SV9 LEU A 1052 UNP A8DG50 CYS 1078 ENGINEERED MUTATION SEQADV 3SV9 THR A 1072 UNP A8DG50 ILE 1098 ENGINEERED MUTATION SEQADV 3SV9 GLN A 1086 UNP A8DG50 PRO 1112 ENGINEERED MUTATION SEQADV 3SV9 THR A 1156 UNP A8DG50 ALA 1182 ENGINEERED MUTATION SEQADV 3SV9 SER A 1159 UNP A8DG50 CYS 1185 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 A 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 A 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 A 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 A 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 A 203 ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU SEQRES 13 A 203 LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 A 203 HIS ALA VAL GLY ILE PHE ARG THR ALA VAL SER THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO VAL GLU SER SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO HET SV6 A 1 49 HET GOL A 2 6 HET SO4 A 3 5 HET ZN A 4 1 HETNAM SV6 (1S,3AR,6AS)-2-[(2S)-2-({(2S)-2-CYCLOHEXYL-2-[(PYRAZIN- HETNAM 2 SV6 2-YLCARBONYL)AMINO]ACETYL}AMINO)-3,3- HETNAM 3 SV6 DIMETHYLBUTANOYL]-N-[(2R,3S)-1-(CYCLOPROPYLAMINO)-2- HETNAM 4 SV6 HYDROXY-1-OXOHEXAN-3-YL]OCTAHYDROCYCLOPENTA[C]PYRROLE- HETNAM 5 SV6 1-CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN SV6 TELAPREVIR, BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SV6 C36 H55 N7 O6 FORMUL 3 GOL C3 H8 O3 FORMUL 4 SO4 O4 S 2- FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *135(H2 O) HELIX 1 1 GLY A 1012 GLY A 1023 1 12 HELIX 2 2 TYR A 1056 GLY A 1060 1 5 HELIX 3 3 SER A 1133 LYS A 1136 5 4 HELIX 4 4 VAL A 1172 ARG A 1180 1 9 SHEET 1 A 7 TYR A1006 GLN A1009 0 SHEET 2 A 7 VAL A 993 ASN A 999 -1 N ASN A 999 O TYR A1006 SHEET 3 A 7 VAL A1033 SER A1037 -1 O ILE A1035 N VAL A 995 SHEET 4 A 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 A 7 VAL A1051 VAL A1055 -1 O TRP A1053 N THR A1046 SHEET 6 A 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 A 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 B 7 ASP A1103 VAL A1107 0 SHEET 2 B 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 B 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 B 7 VAL A1163 PRO A1171 -1 O ALA A1164 N ARG A1130 SHEET 5 B 7 ALA A1150 THR A1160 -1 N THR A1156 O ASP A1168 SHEET 6 B 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 B 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 LINK ZN ZN A 4 O HOH A 128 1555 1555 2.07 LINK ZN ZN A 4 SG CYS A1097 1555 1555 2.28 LINK ZN ZN A 4 SG CYS A1099 1555 1555 2.55 LINK ZN ZN A 4 SG CYS A1145 1555 1555 2.29 SITE 1 AC1 12 HIS A 982 HIS A1057 LEU A1135 LYS A1136 SITE 2 AC1 12 GLY A1137 SER A1138 SER A1139 ARG A1155 SITE 3 AC1 12 THR A1156 ALA A1157 SER A1159 ASP A1168 SITE 1 AC2 12 HOH A 25 HOH A 83 HOH A 100 HOH A 135 SITE 2 AC2 12 LYS A1068 GLN A1086 CYS A1097 THR A1098 SITE 3 AC2 12 CYS A1099 GLY A1100 ARG A1118 GLU A1173 SITE 1 AC3 7 HOH A 16 HOH A 21 HOH A 123 HOH A 126 SITE 2 AC3 7 TYR A1006 GLN A1008 TYR A1056 SITE 1 AC4 5 HOH A 128 CYS A1097 CYS A1099 CYS A1145 SITE 2 AC4 5 HIS A1149 CRYST1 54.837 58.676 60.726 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016467 0.00000