HEADER HYDROLASE INHIBITOR 12-JUL-11 3SVA TITLE CRYSTAL STRUCTURE OF V57D MUTANT OF HUMAN CYSTATIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATIN-C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTATIN-3, GAMMA-TRACE, NEUROENDOCRINE BASIC POLYPEPTIDE, COMPND 5 POST-GAMMA-GLOBULIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CST3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHD313 KEYWDS 3D DOMAIN SWAPPING, CYSTEINE PROTEASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR M.ORLIKOWSKA,A.SZYMANSKA,D.BOREK,Z.OTWINOWSKI,P.SKOWRON,E.JANKOWSKA REVDAT 4 13-SEP-23 3SVA 1 REMARK SEQADV REVDAT 3 24-JAN-18 3SVA 1 AUTHOR REVDAT 2 07-DEC-16 3SVA 1 JRNL REVDAT 1 01-AUG-12 3SVA 0 JRNL AUTH M.ORLIKOWSKA,A.SZYMANSKA,D.BOREK,Z.OTWINOWSKI,P.SKOWRON, JRNL AUTH 2 E.JANKOWSKA JRNL TITL STRUCTURAL CHARACTERIZATION OF V57D AND V57P MUTANTS OF JRNL TITL 2 HUMAN CYSTATIN C, AN AMYLOIDOGENIC PROTEIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 577 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23519666 JRNL DOI 10.1107/S0907444912051657 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 4637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 227 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 334 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 871 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 913 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1233 ; 1.623 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 112 ; 7.079 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;43.043 ;23.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 149 ;20.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;21.592 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 130 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 709 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 561 ; 0.607 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 900 ; 1.309 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 352 ; 2.058 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 333 ; 3.526 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7524 2.7833 31.7468 REMARK 3 T TENSOR REMARK 3 T11: 0.4646 T22: 1.0445 REMARK 3 T33: 0.1881 T12: -0.0733 REMARK 3 T13: 0.0895 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 15.6828 L22: 85.9083 REMARK 3 L33: 4.9772 L12: 1.4649 REMARK 3 L13: -8.7347 L23: 1.5800 REMARK 3 S TENSOR REMARK 3 S11: -0.3770 S12: -0.4200 S13: -1.6229 REMARK 3 S21: 3.3887 S22: -0.5548 S23: 1.1358 REMARK 3 S31: 0.3168 S32: 0.0038 S33: 0.9319 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 25 REMARK 3 ORIGIN FOR THE GROUP (A): 58.0503 15.3445 28.6722 REMARK 3 T TENSOR REMARK 3 T11: 0.5028 T22: 0.2159 REMARK 3 T33: 0.3786 T12: 0.0334 REMARK 3 T13: -0.1655 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 62.0973 L22: 16.7733 REMARK 3 L33: 58.3332 L12: 11.1912 REMARK 3 L13: -48.0608 L23: -2.2650 REMARK 3 S TENSOR REMARK 3 S11: 0.6742 S12: -1.6682 S13: 1.9222 REMARK 3 S21: 0.7931 S22: -0.6802 S23: 0.2939 REMARK 3 S31: -1.2996 S32: 0.8865 S33: 0.0060 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 56.9620 11.6451 16.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.2160 REMARK 3 T33: 0.2677 T12: 0.0378 REMARK 3 T13: 0.0135 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 1.8196 L22: 3.6774 REMARK 3 L33: 10.2716 L12: -0.6086 REMARK 3 L13: 1.5972 L23: -4.9371 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: -0.0997 S13: 0.1412 REMARK 3 S21: 0.1889 S22: -0.0295 S23: -0.0632 REMARK 3 S31: -0.1928 S32: -0.0747 S33: 0.1797 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 84.2022 -11.5260 16.9003 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.2354 REMARK 3 T33: 0.1936 T12: 0.0652 REMARK 3 T13: -0.0118 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 2.9200 L22: 4.7135 REMARK 3 L33: 10.1174 L12: -1.6402 REMARK 3 L13: -3.1166 L23: 5.8103 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.1411 S13: -0.0860 REMARK 3 S21: 0.0000 S22: 0.0763 S23: -0.2188 REMARK 3 S31: 0.0363 S32: 0.4324 S33: -0.0066 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 90.2557 -22.3777 7.3653 REMARK 3 T TENSOR REMARK 3 T11: 0.7828 T22: 0.2397 REMARK 3 T33: 0.3960 T12: 0.1955 REMARK 3 T13: -0.0285 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 18.7176 L22: 10.3484 REMARK 3 L33: 3.9304 L12: 1.9546 REMARK 3 L13: 6.7692 L23: 3.8214 REMARK 3 S TENSOR REMARK 3 S11: 0.1146 S12: 0.1203 S13: -0.7009 REMARK 3 S21: 0.2169 S22: 0.2424 S23: -0.4624 REMARK 3 S31: 0.7431 S32: 0.2867 S33: -0.3570 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 80.3495 -8.0803 19.1589 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.2304 REMARK 3 T33: 0.2725 T12: 0.0478 REMARK 3 T13: -0.0968 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 6.0937 L22: 3.9063 REMARK 3 L33: 7.1006 L12: 0.2636 REMARK 3 L13: -3.9724 L23: 1.4313 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.2399 S13: -0.1172 REMARK 3 S21: -0.1922 S22: 0.0405 S23: -0.0106 REMARK 3 S31: -0.2451 S32: -0.2020 S33: -0.0655 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 80.2484 -5.3139 15.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.3525 REMARK 3 T33: 0.2507 T12: 0.1124 REMARK 3 T13: -0.0936 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 18.1158 L22: 13.6571 REMARK 3 L33: 16.3919 L12: 10.4813 REMARK 3 L13: -11.0229 L23: -8.9255 REMARK 3 S TENSOR REMARK 3 S11: -0.8610 S12: 0.6088 S13: -0.4876 REMARK 3 S21: -0.9562 S22: 0.3894 S23: -0.6326 REMARK 3 S31: 1.1653 S32: 0.5498 S33: 0.4716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4864 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH 6.5, 0.1M SODIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 70.07250 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 70.07250 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 70.07250 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 70.07250 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 70.07250 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 70.07250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 140.14500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 42030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 140.14500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 140.14500 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 140.14500 REMARK 350 BIOMT2 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 140.14500 REMARK 350 BIOMT2 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 38 152.03 -49.71 REMARK 500 ASP A 119 84.12 50.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 121 DBREF 3SVA A 1 120 UNP P01034 CYTC_HUMAN 27 146 SEQADV 3SVA ASP A 57 UNP P01034 VAL 83 ENGINEERED MUTATION SEQRES 1 A 120 SER SER PRO GLY LYS PRO PRO ARG LEU VAL GLY GLY PRO SEQRES 2 A 120 MET ASP ALA SER VAL GLU GLU GLU GLY VAL ARG ARG ALA SEQRES 3 A 120 LEU ASP PHE ALA VAL GLY GLU TYR ASN LYS ALA SER ASN SEQRES 4 A 120 ASP MET TYR HIS SER ARG ALA LEU GLN VAL VAL ARG ALA SEQRES 5 A 120 ARG LYS GLN ILE ASP ALA GLY VAL ASN TYR PHE LEU ASP SEQRES 6 A 120 VAL GLU LEU GLY ARG THR THR CYS THR LYS THR GLN PRO SEQRES 7 A 120 ASN LEU ASP ASN CYS PRO PHE HIS ASP GLN PRO HIS LEU SEQRES 8 A 120 LYS ARG LYS ALA PHE CYS SER PHE GLN ILE TYR ALA VAL SEQRES 9 A 120 PRO TRP GLN GLY THR MET THR LEU SER LYS SER THR CYS SEQRES 10 A 120 GLN ASP ALA HET PEG A 121 7 HET ACT A 122 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION FORMUL 2 PEG C4 H10 O3 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *6(H2 O) HELIX 1 1 GLU A 20 SER A 38 1 19 SHEET 1 A 2 MET A 14 ASP A 15 0 SHEET 2 A 2 ARG A 53 LYS A 54 -1 O LYS A 54 N MET A 14 SHEET 1 B 3 VAL A 60 GLY A 69 0 SHEET 2 B 3 LYS A 94 VAL A 104 -1 O CYS A 97 N VAL A 66 SHEET 3 B 3 THR A 109 CYS A 117 -1 O THR A 111 N TYR A 102 SSBOND 1 CYS A 73 CYS A 83 1555 1555 2.10 SSBOND 2 CYS A 97 CYS A 117 1555 1555 2.10 SITE 1 AC1 3 TYR A 42 ARG A 51 ARG A 53 CRYST1 140.145 140.145 140.145 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007135 0.00000