HEADER HALIDE BINDING PROTEIN 12-JUL-11 3SVB TITLE ENGINEERED MEDIUM-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: TITLE 2 FLUORIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC19 KEYWDS BETA BARREL, LUMINESCENT PROTEIN, YELLOW FLUORESCENT PROTEIN, IMAGING KEYWDS 2 REAGENT, HALIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,J.S.GRIMLEY,L.S.BEESE,H.W.HELLINGA REVDAT 3 15-NOV-23 3SVB 1 REMARK SEQADV LINK ATOM REVDAT 2 08-NOV-17 3SVB 1 REMARK REVDAT 1 18-JUL-12 3SVB 0 JRNL AUTH W.WANG,J.S.GRIMLEY,G.J.AUGUSTINE,L.S.BEESE,H.W.HELLINGA JRNL TITL DETERMINATION OF ENGINEERED CHLORIDE-BINDING SITE STRUCTURES JRNL TITL 2 IN FLUORESCENT PROTEINS REVEALS PRINCIPLES OF HALIDE JRNL TITL 3 RECOGNITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 54382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7030 - 3.5283 0.98 2784 148 0.1632 0.1723 REMARK 3 2 3.5283 - 2.8006 1.00 2708 149 0.1367 0.1703 REMARK 3 3 2.8006 - 2.4466 1.00 2659 169 0.1323 0.1524 REMARK 3 4 2.4466 - 2.2229 1.00 2658 141 0.1260 0.1579 REMARK 3 5 2.2229 - 2.0636 1.00 2658 138 0.1205 0.1336 REMARK 3 6 2.0636 - 1.9419 1.00 2657 129 0.1141 0.1472 REMARK 3 7 1.9419 - 1.8447 1.00 2629 137 0.1146 0.1362 REMARK 3 8 1.8447 - 1.7644 1.00 2632 137 0.1102 0.1428 REMARK 3 9 1.7644 - 1.6964 1.00 2647 130 0.1059 0.1357 REMARK 3 10 1.6964 - 1.6379 1.00 2619 146 0.0984 0.1293 REMARK 3 11 1.6379 - 1.5867 1.00 2607 149 0.1004 0.1552 REMARK 3 12 1.5867 - 1.5413 1.00 2615 129 0.1064 0.1583 REMARK 3 13 1.5413 - 1.5007 1.00 2621 139 0.1152 0.1674 REMARK 3 14 1.5007 - 1.4641 1.00 2614 141 0.1248 0.1700 REMARK 3 15 1.4641 - 1.4308 1.00 2625 140 0.1380 0.1915 REMARK 3 16 1.4308 - 1.4004 1.00 2595 131 0.1537 0.2105 REMARK 3 17 1.4004 - 1.3724 0.99 2586 152 0.1845 0.2148 REMARK 3 18 1.3724 - 1.3465 0.96 2500 127 0.2219 0.2603 REMARK 3 19 1.3465 - 1.3224 0.86 2245 134 0.2486 0.2809 REMARK 3 20 1.3224 - 1.3000 0.76 1942 115 0.2922 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.65 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 47.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27520 REMARK 3 B22 (A**2) : -1.62700 REMARK 3 B33 (A**2) : 1.35180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1969 REMARK 3 ANGLE : 1.384 2674 REMARK 3 CHIRALITY : 0.072 282 REMARK 3 PLANARITY : 0.007 356 REMARK 3 DIHEDRAL : 15.641 735 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1109 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3000, 150 MM AMMONIUM ACETATE, REMARK 280 PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.45700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.61450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.59700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.61450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.45700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.59700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 229 REMARK 465 THR A 230 REMARK 465 LEU A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 ASN A 242 REMARK 465 ASP A 243 REMARK 465 TYR A 244 REMARK 465 LYS A 245 REMARK 465 ASP A 246 REMARK 465 ASP A 247 REMARK 465 ASP A 248 REMARK 465 ASP A 249 REMARK 465 LYS A 250 REMARK 465 GLY A 251 REMARK 465 GLY A 252 REMARK 465 SER A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 32 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP A 210 HE2 HIS A 217 1.34 REMARK 500 HZ1 LYS A 107 O HOH A 530 1.55 REMARK 500 HH12 ARG A 73 O HOH A 279 1.58 REMARK 500 O HOH A 469 O HOH A 535 1.91 REMARK 500 NH1 ARG A 73 O HOH A 279 1.93 REMARK 500 O HOH A 523 O HOH A 524 1.96 REMARK 500 O HOH A 544 O HOH A 547 1.99 REMARK 500 O HOH A 558 O HOH A 562 2.02 REMARK 500 OD2 ASP A 129 O HOH A 516 2.05 REMARK 500 O HOH A 498 O HOH A 543 2.07 REMARK 500 O HOH A 529 O HOH A 568 2.07 REMARK 500 NH1 ARG A 73 O HOH A 296 2.08 REMARK 500 O HOH A 286 O HOH A 287 2.10 REMARK 500 O HOH A 263 O HOH A 271 2.13 REMARK 500 O HOH A 528 O HOH A 532 2.14 REMARK 500 O HOH A 511 O HOH A 548 2.16 REMARK 500 O HOH A 281 O HOH A 500 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 279 O HOH A 281 4545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -158.94 -153.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SRY RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 HALIDE-FREE REMARK 900 RELATED ID: 3SS0 RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 FLUORIDE COMPLEX REMARK 900 RELATED ID: 3SSH RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 CHLORIDE COMPLEX REMARK 900 RELATED ID: 3SSK RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 BROMIDE COMPLEX REMARK 900 RELATED ID: 3SSL RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 IODIDE COMPLEX REMARK 900 RELATED ID: 3SSP RELATED DB: PDB REMARK 900 ENGINEERED LOW-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 HALIDE-FREE REMARK 900 RELATED ID: 3SST RELATED DB: PDB REMARK 900 ENGINEERED LOW-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 CHLORIDE COMPLEX REMARK 900 RELATED ID: 3SSV RELATED DB: PDB REMARK 900 ENGINEERED LOW-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 FLUORIDE COMPLEX REMARK 900 RELATED ID: 3SSY RELATED DB: PDB REMARK 900 ENGINEERED LOW-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 IODIDE COMPLEX REMARK 900 RELATED ID: 3SVE RELATED DB: PDB REMARK 900 ENGINEERED LOW-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 BROMIDE COMPLEX REMARK 900 RELATED ID: 3ST0 RELATED DB: PDB REMARK 900 ENGINEERED MEDIUM-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 HALIDE-FREE REMARK 900 RELATED ID: 3SV5 RELATED DB: PDB REMARK 900 ENGINEERED MEDIUM-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 IODIDE COMPLEX REMARK 900 RELATED ID: 3SVC RELATED DB: PDB REMARK 900 ENGINEERED MEDIUM-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 CHLORIDE COMPLEX REMARK 900 RELATED ID: 3SVD RELATED DB: PDB REMARK 900 ENGINEERED MEDIUM-AFFINITY HALIDE-BINDING PROTEIN DERIVED FROM YFP: REMARK 900 BROMIDE COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP RESIDUE SER65 UNDERWENT MUTATION TO GLY. GLY65, TYR66, AND REMARK 999 GLY67 CIRCULARIZED INTO ONE CHROMOPHORE (CR2). DBREF 3SVB A 0 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 3SVB VAL A 1 UNP P42212 INSERTION SEQADV 3SVB CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 3SVB CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 3SVB CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 3SVB THR A 69 UNP P42212 GLN 69 ENGINEERED MUTATION SEQADV 3SVB ALA A 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 3SVB ARG A 79 UNP P42212 LYS 79 ENGINEERED MUTATION SEQADV 3SVB ALA A 163 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 3SVB TYR A 203 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 3SVB LEU A 231 UNP P42212 HIS 231 ENGINEERED MUTATION SEQADV 3SVB GLY A 239 UNP P42212 EXPRESSION TAG SEQADV 3SVB GLY A 240 UNP P42212 EXPRESSION TAG SEQADV 3SVB SER A 241 UNP P42212 EXPRESSION TAG SEQADV 3SVB ASN A 242 UNP P42212 EXPRESSION TAG SEQADV 3SVB ASP A 243 UNP P42212 EXPRESSION TAG SEQADV 3SVB TYR A 244 UNP P42212 EXPRESSION TAG SEQADV 3SVB LYS A 245 UNP P42212 EXPRESSION TAG SEQADV 3SVB ASP A 246 UNP P42212 EXPRESSION TAG SEQADV 3SVB ASP A 247 UNP P42212 EXPRESSION TAG SEQADV 3SVB ASP A 248 UNP P42212 EXPRESSION TAG SEQADV 3SVB ASP A 249 UNP P42212 EXPRESSION TAG SEQADV 3SVB LYS A 250 UNP P42212 EXPRESSION TAG SEQADV 3SVB GLY A 251 UNP P42212 EXPRESSION TAG SEQADV 3SVB GLY A 252 UNP P42212 EXPRESSION TAG SEQADV 3SVB SER A 253 UNP P42212 EXPRESSION TAG SEQADV 3SVB HIS A 254 UNP P42212 EXPRESSION TAG SEQADV 3SVB HIS A 255 UNP P42212 EXPRESSION TAG SEQADV 3SVB HIS A 256 UNP P42212 EXPRESSION TAG SEQADV 3SVB HIS A 257 UNP P42212 EXPRESSION TAG SEQADV 3SVB HIS A 258 UNP P42212 EXPRESSION TAG SEQADV 3SVB HIS A 259 UNP P42212 EXPRESSION TAG SEQRES 1 A 258 MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 258 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 258 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 258 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 258 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE SEQRES 6 A 258 CR2 VAL THR CYS PHE ALA ARG TYR PRO ASP HIS MET ARG SEQRES 7 A 258 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 258 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 A 258 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 258 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 258 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 258 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 A 258 LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN SEQRES 14 A 258 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 258 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 258 ASP ASN HIS TYR LEU SER TYR GLN SER ALA LEU SER LYS SEQRES 17 A 258 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 258 PHE VAL THR ALA ALA GLY ILE THR LEU GLY MET ASP GLU SEQRES 19 A 258 LEU TYR LYS GLY GLY SER ASN ASP TYR LYS ASP ASP ASP SEQRES 20 A 258 ASP LYS GLY GLY SER HIS HIS HIS HIS HIS HIS MODRES 3SVB CR2 A 66 GLY CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3SVB CR2 A 66 TYR CIRCULARIZED TRI-PEPTIDE CHROMOPHORE MODRES 3SVB CR2 A 66 GLY CIRCULARIZED TRI-PEPTIDE CHROMOPHORE HET CR2 A 66 32 HET EDO A 260 10 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *314(H2 O) HELIX 1 1 SER A 2 LEU A 7 1 6 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 ALA A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 LYS A 156 ASN A 159 5 4 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O ILE A 47 N SER A 30 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N HIS A 148 O TYR A 203 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.45 LINK C3 ACR2 A 66 N AVAL A 68 1555 1555 1.31 LINK C3 BCR2 A 66 N BVAL A 68 1555 1555 1.30 CISPEP 1 MET A 88 PRO A 89 0 7.64 SITE 1 AC1 8 CR2 A 66 THR A 69 GLN A 94 ARG A 96 SITE 2 AC1 8 VAL A 150 GLN A 183 TYR A 203 HOH A 315 CRYST1 50.914 63.194 69.229 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014445 0.00000