HEADER OXIDOREDUCTASE 12-JUL-11 3SVT TITLE STRUCTURE OF A SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE FROM TITLE 2 MYCOBACTERIUM ULCERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS; SOURCE 3 ORGANISM_TAXID: 362242; SOURCE 4 STRAIN: AGY99; SOURCE 5 GENE: MUL_4042; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3SVT 1 REMARK SEQADV REVDAT 3 08-NOV-17 3SVT 1 REMARK REVDAT 2 22-APR-15 3SVT 1 JRNL REVDAT 1 20-JUL-11 3SVT 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 32144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.32000 REMARK 3 B22 (A**2) : -2.35000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4017 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2575 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5463 ; 1.333 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6260 ; 1.066 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 551 ; 6.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;31.998 ;23.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 587 ;12.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 625 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4694 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 828 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2699 ; 0.643 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1154 ; 0.145 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4253 ; 1.128 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1318 ; 1.975 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 3.026 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2885 21.1199 71.8945 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.1138 REMARK 3 T33: 0.1265 T12: 0.0250 REMARK 3 T13: -0.0376 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.1356 L22: 1.0109 REMARK 3 L33: 2.0005 L12: 0.3347 REMARK 3 L13: 0.2672 L23: 0.2517 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0044 S13: 0.1521 REMARK 3 S21: -0.0713 S22: -0.0165 S23: 0.1231 REMARK 3 S31: -0.1098 S32: -0.1398 S33: 0.0238 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8238 22.1079 67.3716 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1166 REMARK 3 T33: 0.0933 T12: 0.0050 REMARK 3 T13: -0.0380 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.5268 L22: 2.0153 REMARK 3 L33: 1.1599 L12: 0.3001 REMARK 3 L13: 0.1717 L23: -0.0573 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.1021 S13: 0.1603 REMARK 3 S21: -0.1945 S22: 0.0117 S23: 0.1710 REMARK 3 S31: -0.0363 S32: -0.1285 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 56.7332 4.6098 67.9915 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1102 REMARK 3 T33: 0.1234 T12: -0.0165 REMARK 3 T13: -0.0130 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.2854 L22: 6.1302 REMARK 3 L33: 0.2172 L12: 1.0059 REMARK 3 L13: 0.1869 L23: 0.7301 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0428 S13: 0.0262 REMARK 3 S21: -0.1847 S22: 0.0158 S23: 0.3474 REMARK 3 S31: 0.0358 S32: -0.0420 S33: 0.0047 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0070 3.3579 81.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.1023 REMARK 3 T33: 0.1015 T12: -0.0038 REMARK 3 T13: -0.0153 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1682 L22: 0.6497 REMARK 3 L33: 0.3445 L12: -0.1608 REMARK 3 L13: -0.1288 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0282 S13: -0.0571 REMARK 3 S21: -0.0213 S22: -0.0306 S23: 0.1311 REMARK 3 S31: 0.0407 S32: -0.0860 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 49 REMARK 3 ORIGIN FOR THE GROUP (A): 48.2665 23.6578 108.6747 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.0445 REMARK 3 T33: 0.1101 T12: 0.0414 REMARK 3 T13: 0.0297 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 1.5147 L22: 3.2125 REMARK 3 L33: 3.1921 L12: 0.3457 REMARK 3 L13: -0.7461 L23: 0.4281 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.0000 S13: 0.1552 REMARK 3 S21: 0.0972 S22: -0.0167 S23: 0.1109 REMARK 3 S31: -0.4639 S32: -0.0678 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9996 18.1811 113.8516 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.0911 REMARK 3 T33: 0.0621 T12: 0.0362 REMARK 3 T13: 0.0398 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.5134 L22: 2.7660 REMARK 3 L33: 1.3520 L12: -0.4843 REMARK 3 L13: 0.0866 L23: 0.1962 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: -0.0715 S13: 0.0945 REMARK 3 S21: 0.2238 S22: -0.0209 S23: 0.1382 REMARK 3 S31: -0.2710 S32: -0.1216 S33: 0.0911 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 95 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 68.5416 11.2859 110.7902 REMARK 3 T TENSOR REMARK 3 T11: 0.4441 T22: 0.5232 REMARK 3 T33: 0.5795 T12: 0.1383 REMARK 3 T13: -0.0635 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 32.8903 L22: 3.7608 REMARK 3 L33: 0.1246 L12: -11.1178 REMARK 3 L13: -2.0167 L23: 0.6824 REMARK 3 S TENSOR REMARK 3 S11: -0.5129 S12: -1.1755 S13: 0.9267 REMARK 3 S21: 0.2103 S22: 0.4840 S23: -0.2871 REMARK 3 S31: 0.0247 S32: 0.0696 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 103 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0285 6.7974 105.6184 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.1029 REMARK 3 T33: 0.1031 T12: 0.0058 REMARK 3 T13: 0.0184 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.3615 L22: 0.4415 REMARK 3 L33: 0.5733 L12: -0.0710 REMARK 3 L13: 0.1993 L23: -0.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0262 S13: 0.0223 REMARK 3 S21: 0.0707 S22: 0.0002 S23: -0.0129 REMARK 3 S31: -0.0618 S32: 0.0161 S33: 0.0091 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 196 B 276 REMARK 3 ORIGIN FOR THE GROUP (A): 67.5092 15.5995 97.3888 REMARK 3 T TENSOR REMARK 3 T11: 0.1122 T22: 0.1112 REMARK 3 T33: 0.1078 T12: -0.0058 REMARK 3 T13: -0.0220 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.5948 L22: 0.6849 REMARK 3 L33: 0.3251 L12: -0.2094 REMARK 3 L13: 0.0295 L23: -0.1013 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0516 S13: 0.0984 REMARK 3 S21: 0.1172 S22: 0.0036 S23: -0.1682 REMARK 3 S31: -0.0740 S32: 0.0916 S33: 0.0449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3SVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32329 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1FMC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG300, 0.1 M CACODYLATE, PH 6.5, REMARK 280 200 MM CALCIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.59250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.27100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.59250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.27100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 122.37000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 LEU A 3 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 196 CG OD1 OD2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 THR A 202 OG1 CG2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 49 CG CD OE1 NE2 REMARK 470 LEU B 51 CG CD1 CD2 REMARK 470 LEU B 54 CG CD1 CD2 REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 ASN B 100 CG OD1 ND2 REMARK 470 ILE B 101 CG1 CG2 CD1 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 197 CG CD1 CD2 REMARK 470 ILE B 201 CG1 CG2 CD1 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 277 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 271 O GLY B 275 2.16 REMARK 500 NH2 ARG A 113 O HOH A 373 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 100 131.79 157.62 REMARK 500 SER A 146 -130.80 -115.20 REMARK 500 LEU A 197 1.74 -67.33 REMARK 500 ASP A 249 14.12 -148.81 REMARK 500 ARG A 255 -115.56 -103.47 REMARK 500 LEU B 54 -178.62 -65.45 REMARK 500 ASN B 57 34.28 -84.79 REMARK 500 SER B 146 -133.43 -99.66 REMARK 500 TRP B 156 12.42 80.51 REMARK 500 PRO B 218 43.33 -79.82 REMARK 500 ASP B 249 13.65 -145.68 REMARK 500 ARG B 255 -118.79 -111.46 REMARK 500 LEU B 276 95.99 92.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 54 GLY A 55 148.00 REMARK 500 ALA A 56 ASN A 57 131.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 278 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 6 O REMARK 620 2 GLY A 31 O 78.2 REMARK 620 3 HOH A 378 O 105.9 142.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYULA.00414.B RELATED DB: TARGETDB DBREF 3SVT A 1 277 UNP A0PUS8 A0PUS8_MYCUA 1 277 DBREF 3SVT B 1 277 UNP A0PUS8 A0PUS8_MYCUA 1 277 SEQADV 3SVT GLY A -3 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT PRO A -2 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT GLY A -1 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT SER A 0 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT GLY B -3 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT PRO B -2 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT GLY B -1 UNP A0PUS8 EXPRESSION TAG SEQADV 3SVT SER B 0 UNP A0PUS8 EXPRESSION TAG SEQRES 1 A 281 GLY PRO GLY SER MET GLN LEU SER PHE GLN ASP ARG THR SEQRES 2 A 281 TYR LEU VAL THR GLY GLY GLY SER GLY ILE GLY LYS GLY SEQRES 3 A 281 VAL ALA ALA GLY LEU VAL ALA ALA GLY ALA SER VAL MET SEQRES 4 A 281 ILE VAL GLY ARG ASN PRO ASP LYS LEU ALA GLY ALA VAL SEQRES 5 A 281 GLN GLU LEU GLU ALA LEU GLY ALA ASN GLY GLY ALA ILE SEQRES 6 A 281 ARG TYR GLU PRO THR ASP ILE THR ASN GLU ASP GLU THR SEQRES 7 A 281 ALA ARG ALA VAL ASP ALA VAL THR ALA TRP HIS GLY ARG SEQRES 8 A 281 LEU HIS GLY VAL VAL HIS CYS ALA GLY GLY SER GLU ASN SEQRES 9 A 281 ILE GLY PRO ILE THR GLN VAL ASP SER GLU ALA TRP ARG SEQRES 10 A 281 ARG THR VAL ASP LEU ASN VAL ASN GLY THR MET TYR VAL SEQRES 11 A 281 LEU LYS HIS ALA ALA ARG GLU MET VAL ARG GLY GLY GLY SEQRES 12 A 281 GLY SER PHE VAL GLY ILE SER SER ILE ALA ALA SER ASN SEQRES 13 A 281 THR HIS ARG TRP PHE GLY ALA TYR GLY VAL THR LYS SER SEQRES 14 A 281 ALA VAL ASP HIS LEU MET GLN LEU ALA ALA ASP GLU LEU SEQRES 15 A 281 GLY ALA SER TRP VAL ARG VAL ASN SER ILE ARG PRO GLY SEQRES 16 A 281 LEU ILE ARG THR ASP LEU VAL ALA ALA ILE THR GLU SER SEQRES 17 A 281 ALA GLU LEU SER SER ASP TYR ALA MET CYS THR PRO LEU SEQRES 18 A 281 PRO ARG GLN GLY GLU VAL GLU ASP VAL ALA ASN MET ALA SEQRES 19 A 281 MET PHE LEU LEU SER ASP ALA ALA SER PHE VAL THR GLY SEQRES 20 A 281 GLN VAL ILE ASN VAL ASP GLY GLY GLN MET LEU ARG ARG SEQRES 21 A 281 GLY PRO ASP PHE SER ALA MET LEU GLU PRO VAL PHE GLY SEQRES 22 A 281 ARG ASP ALA LEU ARG GLY LEU VAL SEQRES 1 B 281 GLY PRO GLY SER MET GLN LEU SER PHE GLN ASP ARG THR SEQRES 2 B 281 TYR LEU VAL THR GLY GLY GLY SER GLY ILE GLY LYS GLY SEQRES 3 B 281 VAL ALA ALA GLY LEU VAL ALA ALA GLY ALA SER VAL MET SEQRES 4 B 281 ILE VAL GLY ARG ASN PRO ASP LYS LEU ALA GLY ALA VAL SEQRES 5 B 281 GLN GLU LEU GLU ALA LEU GLY ALA ASN GLY GLY ALA ILE SEQRES 6 B 281 ARG TYR GLU PRO THR ASP ILE THR ASN GLU ASP GLU THR SEQRES 7 B 281 ALA ARG ALA VAL ASP ALA VAL THR ALA TRP HIS GLY ARG SEQRES 8 B 281 LEU HIS GLY VAL VAL HIS CYS ALA GLY GLY SER GLU ASN SEQRES 9 B 281 ILE GLY PRO ILE THR GLN VAL ASP SER GLU ALA TRP ARG SEQRES 10 B 281 ARG THR VAL ASP LEU ASN VAL ASN GLY THR MET TYR VAL SEQRES 11 B 281 LEU LYS HIS ALA ALA ARG GLU MET VAL ARG GLY GLY GLY SEQRES 12 B 281 GLY SER PHE VAL GLY ILE SER SER ILE ALA ALA SER ASN SEQRES 13 B 281 THR HIS ARG TRP PHE GLY ALA TYR GLY VAL THR LYS SER SEQRES 14 B 281 ALA VAL ASP HIS LEU MET GLN LEU ALA ALA ASP GLU LEU SEQRES 15 B 281 GLY ALA SER TRP VAL ARG VAL ASN SER ILE ARG PRO GLY SEQRES 16 B 281 LEU ILE ARG THR ASP LEU VAL ALA ALA ILE THR GLU SER SEQRES 17 B 281 ALA GLU LEU SER SER ASP TYR ALA MET CYS THR PRO LEU SEQRES 18 B 281 PRO ARG GLN GLY GLU VAL GLU ASP VAL ALA ASN MET ALA SEQRES 19 B 281 MET PHE LEU LEU SER ASP ALA ALA SER PHE VAL THR GLY SEQRES 20 B 281 GLN VAL ILE ASN VAL ASP GLY GLY GLN MET LEU ARG ARG SEQRES 21 B 281 GLY PRO ASP PHE SER ALA MET LEU GLU PRO VAL PHE GLY SEQRES 22 B 281 ARG ASP ALA LEU ARG GLY LEU VAL HET NA A 278 1 HET CL A 279 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 NA NA 1+ FORMUL 4 CL CL 1- FORMUL 5 HOH *194(H2 O) HELIX 1 1 SER A 17 ALA A 30 1 14 HELIX 2 2 ASN A 40 ALA A 53 1 14 HELIX 3 3 ASN A 70 GLY A 86 1 17 HELIX 4 4 PRO A 103 VAL A 107 5 5 HELIX 5 5 ASP A 108 GLY A 137 1 30 HELIX 6 6 SER A 147 ASN A 152 1 6 HELIX 7 7 GLY A 158 GLY A 179 1 22 HELIX 8 8 THR A 195 LEU A 197 5 3 HELIX 9 9 VAL A 198 GLU A 203 1 6 HELIX 10 10 SER A 204 THR A 215 1 12 HELIX 11 11 GLU A 222 SER A 235 1 14 HELIX 12 12 ASP A 236 SER A 239 5 4 HELIX 13 13 GLY A 251 ARG A 255 5 5 HELIX 14 14 PHE A 260 GLY A 269 1 10 HELIX 15 15 ASP A 271 GLY A 275 5 5 HELIX 16 16 SER B 17 ALA B 30 1 14 HELIX 17 17 ASN B 40 LEU B 54 1 15 HELIX 18 18 ASN B 70 GLY B 86 1 17 HELIX 19 19 PRO B 103 VAL B 107 5 5 HELIX 20 20 ASP B 108 GLY B 137 1 30 HELIX 21 21 SER B 147 ASN B 152 1 6 HELIX 22 22 GLY B 158 GLY B 179 1 22 HELIX 23 23 THR B 195 LEU B 197 5 3 HELIX 24 24 VAL B 198 SER B 204 1 7 HELIX 25 25 SER B 204 THR B 215 1 12 HELIX 26 26 VAL B 223 SER B 235 1 13 HELIX 27 27 ASP B 236 SER B 239 5 4 HELIX 28 28 GLY B 251 ARG B 255 5 5 HELIX 29 29 PHE B 260 GLY B 269 1 10 HELIX 30 30 ASP B 271 GLY B 275 5 5 SHEET 1 A 7 ALA A 60 PRO A 65 0 SHEET 2 A 7 SER A 33 GLY A 38 1 N ILE A 36 O ARG A 62 SHEET 3 A 7 THR A 9 THR A 13 1 N VAL A 12 O MET A 35 SHEET 4 A 7 GLY A 90 HIS A 93 1 O VAL A 92 N LEU A 11 SHEET 5 A 7 GLY A 140 ILE A 145 1 O VAL A 143 N HIS A 93 SHEET 6 A 7 VAL A 183 PRO A 190 1 O ARG A 184 N PHE A 142 SHEET 7 A 7 VAL A 245 VAL A 248 1 O ILE A 246 N ARG A 189 SHEET 1 B 7 ALA B 60 PRO B 65 0 SHEET 2 B 7 SER B 33 GLY B 38 1 N ILE B 36 O ARG B 62 SHEET 3 B 7 THR B 9 THR B 13 1 N VAL B 12 O MET B 35 SHEET 4 B 7 GLY B 90 HIS B 93 1 O VAL B 92 N LEU B 11 SHEET 5 B 7 GLY B 140 ILE B 145 1 O VAL B 143 N HIS B 93 SHEET 6 B 7 VAL B 183 PRO B 190 1 O ARG B 184 N PHE B 142 SHEET 7 B 7 VAL B 245 VAL B 248 1 O ILE B 246 N SER B 187 SHEET 1 C 2 ILE B 193 ARG B 194 0 SHEET 2 C 2 GLY B 221 GLU B 222 1 O GLY B 221 N ARG B 194 LINK O GLN A 6 NA NA A 278 1555 1555 2.30 LINK O GLY A 31 NA NA A 278 1555 1555 2.33 LINK NA NA A 278 O HOH A 378 1555 1555 2.70 SITE 1 AC1 4 GLN A 6 GLY A 31 GLY A 58 HOH A 378 SITE 1 AC2 2 GLY A 14 GLY A 16 CRYST1 61.185 64.542 118.804 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008417 0.00000