HEADER OXIDOREDUCTASE 14-JUL-11 3SWT TITLE CRYSTAL STRUCTURE OF THE TAURINE CATABOLISM DIOXYGENASE, TAUD FROM TITLE 2 MYCOBACTERIUM MARINUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAURINE CATABOLISM DIOXYGENASE, TAUD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM MARINUM M; SOURCE 3 ORGANISM_TAXID: 216594; SOURCE 4 STRAIN: ATCC BAA-535 / M; SOURCE 5 GENE: TAUD, MMAR_1141; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TAURINE CATABOLISM DIOXYGENASE, TAUD, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 28-FEB-24 3SWT 1 REMARK SEQADV LINK REVDAT 5 08-NOV-17 3SWT 1 REMARK REVDAT 4 15-APR-15 3SWT 1 JRNL REVDAT 3 11-MAR-15 3SWT 1 JRNL REVDAT 2 12-NOV-14 3SWT 1 AUTHOR REVDAT 1 03-AUG-11 3SWT 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 40461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2556 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.23000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.649 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3937 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2574 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5378 ; 1.357 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6238 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 6.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;33.556 ;23.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;13.568 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4472 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 827 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2454 ; 0.699 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 996 ; 0.174 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3935 ; 1.307 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 2.078 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1436 ; 3.294 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 296 REMARK 3 RESIDUE RANGE : A 299 A 300 REMARK 3 RESIDUE RANGE : A 301 A 456 REMARK 3 ORIGIN FOR THE GROUP (A): 56.6303 28.7753 62.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.0283 REMARK 3 T33: 0.0333 T12: -0.0179 REMARK 3 T13: 0.0278 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.4246 L22: 1.2960 REMARK 3 L33: 0.8329 L12: 0.0130 REMARK 3 L13: -0.0864 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0218 S13: -0.0020 REMARK 3 S21: 0.0851 S22: -0.0056 S23: 0.1406 REMARK 3 S31: 0.0239 S32: -0.0725 S33: 0.0553 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 297 REMARK 3 RESIDUE RANGE : B 299 B 300 REMARK 3 RESIDUE RANGE : B 301 B 467 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7982 17.6272 91.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.0236 REMARK 3 T33: 0.0386 T12: 0.0155 REMARK 3 T13: 0.0490 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.4952 L22: 1.0277 REMARK 3 L33: 0.8974 L12: -0.0999 REMARK 3 L13: -0.1597 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: -0.0717 S12: 0.0010 S13: -0.0152 REMARK 3 S21: -0.0955 S22: -0.0262 S23: -0.0684 REMARK 3 S31: 0.0912 S32: 0.0362 S33: 0.0980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3SWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40618 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 44 MG/ML. 20% PEG 3350, 200MM REMARK 280 POTASSIUM CITRATE. 25% ETHYLENE GLYCOL (CRYOPROTECTION), PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.54900 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.35150 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.54900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.35150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 138.19600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.70300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 34.54900 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 89.07800 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 157.05450 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 103.64700 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 89.07800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -52.35150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 70 REMARK 465 HIS A 71 REMARK 465 PRO A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 ALA A 77 REMARK 465 LEU A 78 REMARK 465 PRO A 79 REMARK 465 ASP A 80 REMARK 465 ALA A 81 REMARK 465 PRO A 82 REMARK 465 ILE A 83 REMARK 465 ILE A 84 REMARK 465 THR A 85 REMARK 465 PRO A 86 REMARK 465 ILE A 87 REMARK 465 ASN A 88 REMARK 465 SER A 89 REMARK 465 GLU A 90 REMARK 465 TRP A 91 REMARK 465 GLY A 92 REMARK 465 LYS A 93 REMARK 465 TYR A 156 REMARK 465 ASP A 157 REMARK 465 TYR A 158 REMARK 465 VAL A 159 REMARK 465 ALA A 160 REMARK 465 ASN A 161 REMARK 465 GLU A 162 REMARK 465 ALA A 163 REMARK 465 VAL A 164 REMARK 465 GLN A 165 REMARK 465 ALA A 166 REMARK 465 LEU A 167 REMARK 465 THR A 168 REMARK 465 ASP A 169 REMARK 465 THR A 170 REMARK 465 GLN A 171 REMARK 465 GLN A 172 REMARK 465 ALA A 173 REMARK 465 PHE A 174 REMARK 465 ARG A 175 REMARK 465 GLN A 176 REMARK 465 ALA A 177 REMARK 465 PHE A 178 REMARK 465 GLN A 179 REMARK 465 LYS A 180 REMARK 465 ALA A 297 REMARK 465 GLY A 298 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 PRO B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 ALA B 75 REMARK 465 ALA B 76 REMARK 465 ALA B 77 REMARK 465 LEU B 78 REMARK 465 PRO B 79 REMARK 465 ASP B 80 REMARK 465 ALA B 81 REMARK 465 PRO B 82 REMARK 465 ILE B 83 REMARK 465 ILE B 84 REMARK 465 THR B 85 REMARK 465 PRO B 86 REMARK 465 ILE B 87 REMARK 465 ASN B 88 REMARK 465 SER B 89 REMARK 465 GLU B 90 REMARK 465 TRP B 91 REMARK 465 GLY B 92 REMARK 465 LYS B 93 REMARK 465 ALA B 94 REMARK 465 TYR B 156 REMARK 465 ASP B 157 REMARK 465 TYR B 158 REMARK 465 VAL B 159 REMARK 465 ALA B 160 REMARK 465 ASN B 161 REMARK 465 GLU B 162 REMARK 465 ALA B 163 REMARK 465 VAL B 164 REMARK 465 GLN B 165 REMARK 465 ALA B 166 REMARK 465 LEU B 167 REMARK 465 THR B 168 REMARK 465 ASP B 169 REMARK 465 THR B 170 REMARK 465 GLN B 171 REMARK 465 GLN B 172 REMARK 465 ALA B 173 REMARK 465 PHE B 174 REMARK 465 ARG B 175 REMARK 465 GLN B 176 REMARK 465 ALA B 177 REMARK 465 PHE B 178 REMARK 465 GLN B 179 REMARK 465 LYS B 180 REMARK 465 GLY B 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 ILE A 69 CG1 CG2 CD1 REMARK 470 ASN A 95 CG OD1 ND2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 LEU A 296 CG CD1 CD2 REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 HIS B 71 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 216 CG CD OE1 NE2 REMARK 470 ASP B 263 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 301 O HOH A 381 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 43 -41.77 77.98 REMARK 500 ASN A 106 69.97 -102.03 REMARK 500 ALA A 203 -124.90 -145.08 REMARK 500 ALA A 252 19.91 -141.89 REMARK 500 ALA A 295 -43.70 -130.92 REMARK 500 LYS B 43 -40.72 75.67 REMARK 500 ASN B 106 69.96 -106.57 REMARK 500 ALA B 203 -128.88 -154.13 REMARK 500 ALA B 252 24.82 -144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 299 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 ASP A 100 OD1 93.9 REMARK 620 3 HIS A 255 NE2 92.7 94.6 REMARK 620 4 HOH A 319 O 93.4 104.5 159.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 299 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 98 NE2 REMARK 620 2 ASP B 100 OD1 93.5 REMARK 620 3 HIS B 255 NE2 89.4 83.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYMAA.01188.A RELATED DB: TARGETDB DBREF 3SWT A 1 298 UNP B2HD26 B2HD26_MYCMM 1 298 DBREF 3SWT B 1 298 UNP B2HD26 B2HD26_MYCMM 1 298 SEQADV 3SWT GLY A -3 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT PRO A -2 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT GLY A -1 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT SER A 0 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT GLY B -3 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT PRO B -2 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT GLY B -1 UNP B2HD26 EXPRESSION TAG SEQADV 3SWT SER B 0 UNP B2HD26 EXPRESSION TAG SEQRES 1 A 302 GLY PRO GLY SER MET THR ASP LEU ILE THR VAL LYS LYS SEQRES 2 A 302 LEU GLY SER ARG ILE GLY ALA GLN VAL ASP GLY VAL SER SEQRES 3 A 302 LEU GLY ALA ASP LEU ASP ALA ALA ALA VAL ASP GLN ILE SEQRES 4 A 302 ARG ALA ALA LEU LEU GLU HIS LYS VAL ILE PHE PHE ARG SEQRES 5 A 302 ASN GLN HIS HIS LEU ASP ASP GLN GLN GLN LEU GLN PHE SEQRES 6 A 302 ALA GLY LEU LEU GLY THR PRO ILE GLY HIS PRO ALA ALA SEQRES 7 A 302 ALA ALA ALA LEU PRO ASP ALA PRO ILE ILE THR PRO ILE SEQRES 8 A 302 ASN SER GLU TRP GLY LYS ALA ASN ARG TRP HIS THR ASP SEQRES 9 A 302 VAL THR PHE ALA ALA ASN TYR PRO ALA ALA SER ILE LEU SEQRES 10 A 302 ARG ALA VAL THR LEU PRO ASN TYR GLY GLY SER THR LEU SEQRES 11 A 302 TRP ALA ASN THR ALA THR ALA TYR ALA GLU LEU PRO GLU SEQRES 12 A 302 PRO LEU LYS CYS LEU VAL GLU ASN LEU TRP ALA LEU HIS SEQRES 13 A 302 THR ASN ARG TYR ASP TYR VAL ALA ASN GLU ALA VAL GLN SEQRES 14 A 302 ALA LEU THR ASP THR GLN GLN ALA PHE ARG GLN ALA PHE SEQRES 15 A 302 GLN LYS PRO ASP PHE ARG THR GLU HIS PRO VAL VAL ARG SEQRES 16 A 302 VAL HIS PRO GLU THR GLY GLU ARG THR LEU LEU ALA GLY SEQRES 17 A 302 ASP PHE VAL ARG GLY PHE VAL GLY LEU ASP SER GLN GLU SEQRES 18 A 302 SER SER ALA LEU PHE GLU LEU LEU GLN ARG ARG ILE THR SEQRES 19 A 302 SER PRO GLU ASN THR ILE ARG TRP ASN TRP GLU SER GLY SEQRES 20 A 302 ASP VAL ALA ILE TRP ASP ASN ARG ALA THR GLN HIS ARG SEQRES 21 A 302 ALA ILE ASP ASP TYR ASP ASP GLN HIS ARG LEU LEU HIS SEQRES 22 A 302 ARG VAL THR LEU MET GLY ASP VAL PRO VAL ASP VAL HIS SEQRES 23 A 302 GLY GLN ARG SER ARG VAL ILE SER GLY ALA PRO LEU ALA SEQRES 24 A 302 LEU ALA GLY SEQRES 1 B 302 GLY PRO GLY SER MET THR ASP LEU ILE THR VAL LYS LYS SEQRES 2 B 302 LEU GLY SER ARG ILE GLY ALA GLN VAL ASP GLY VAL SER SEQRES 3 B 302 LEU GLY ALA ASP LEU ASP ALA ALA ALA VAL ASP GLN ILE SEQRES 4 B 302 ARG ALA ALA LEU LEU GLU HIS LYS VAL ILE PHE PHE ARG SEQRES 5 B 302 ASN GLN HIS HIS LEU ASP ASP GLN GLN GLN LEU GLN PHE SEQRES 6 B 302 ALA GLY LEU LEU GLY THR PRO ILE GLY HIS PRO ALA ALA SEQRES 7 B 302 ALA ALA ALA LEU PRO ASP ALA PRO ILE ILE THR PRO ILE SEQRES 8 B 302 ASN SER GLU TRP GLY LYS ALA ASN ARG TRP HIS THR ASP SEQRES 9 B 302 VAL THR PHE ALA ALA ASN TYR PRO ALA ALA SER ILE LEU SEQRES 10 B 302 ARG ALA VAL THR LEU PRO ASN TYR GLY GLY SER THR LEU SEQRES 11 B 302 TRP ALA ASN THR ALA THR ALA TYR ALA GLU LEU PRO GLU SEQRES 12 B 302 PRO LEU LYS CYS LEU VAL GLU ASN LEU TRP ALA LEU HIS SEQRES 13 B 302 THR ASN ARG TYR ASP TYR VAL ALA ASN GLU ALA VAL GLN SEQRES 14 B 302 ALA LEU THR ASP THR GLN GLN ALA PHE ARG GLN ALA PHE SEQRES 15 B 302 GLN LYS PRO ASP PHE ARG THR GLU HIS PRO VAL VAL ARG SEQRES 16 B 302 VAL HIS PRO GLU THR GLY GLU ARG THR LEU LEU ALA GLY SEQRES 17 B 302 ASP PHE VAL ARG GLY PHE VAL GLY LEU ASP SER GLN GLU SEQRES 18 B 302 SER SER ALA LEU PHE GLU LEU LEU GLN ARG ARG ILE THR SEQRES 19 B 302 SER PRO GLU ASN THR ILE ARG TRP ASN TRP GLU SER GLY SEQRES 20 B 302 ASP VAL ALA ILE TRP ASP ASN ARG ALA THR GLN HIS ARG SEQRES 21 B 302 ALA ILE ASP ASP TYR ASP ASP GLN HIS ARG LEU LEU HIS SEQRES 22 B 302 ARG VAL THR LEU MET GLY ASP VAL PRO VAL ASP VAL HIS SEQRES 23 B 302 GLY GLN ARG SER ARG VAL ILE SER GLY ALA PRO LEU ALA SEQRES 24 B 302 LEU ALA GLY HET FE A 299 1 HET EDO A 300 4 HET FE B 299 1 HET PEG B 300 7 HETNAM FE FE (III) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FE 2(FE 3+) FORMUL 4 EDO C2 H6 O2 FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *323(H2 O) HELIX 1 1 ASP A 28 LYS A 43 1 16 HELIX 2 2 ASP A 54 GLY A 66 1 13 HELIX 3 3 THR A 130 GLU A 136 1 7 HELIX 4 4 PRO A 138 ASN A 147 1 10 HELIX 5 5 ASP A 214 THR A 230 1 17 HELIX 6 6 SER A 231 GLU A 233 5 3 HELIX 7 7 ASP B 28 LYS B 43 1 16 HELIX 8 8 ASP B 54 LEU B 64 1 11 HELIX 9 9 THR B 130 GLU B 136 1 7 HELIX 10 10 PRO B 138 ASN B 147 1 10 HELIX 11 11 ASP B 214 THR B 230 1 17 HELIX 12 12 SER B 231 GLU B 233 5 3 SHEET 1 A 6 THR A 6 LYS A 9 0 SHEET 2 A 6 ALA A 16 ASP A 19 -1 O GLN A 17 N LYS A 8 SHEET 3 A 6 VAL A 44 PHE A 47 1 O PHE A 46 N VAL A 18 SHEET 4 A 6 VAL A 245 ASP A 249 -1 O VAL A 245 N PHE A 47 SHEET 5 A 6 ALA A 110 THR A 117 -1 N LEU A 113 O ALA A 246 SHEET 6 A 6 LEU A 267 LEU A 273 -1 O LEU A 267 N THR A 117 SHEET 1 B 3 THR A 235 TRP A 238 0 SHEET 2 B 3 THR A 125 ASN A 129 -1 N THR A 125 O TRP A 238 SHEET 3 B 3 THR A 253 ALA A 257 -1 O ARG A 256 N LEU A 126 SHEET 1 C 4 VAL A 207 PHE A 210 0 SHEET 2 C 4 TRP A 149 THR A 153 -1 N LEU A 151 O ARG A 208 SHEET 3 C 4 ARG A 184 PRO A 188 -1 O THR A 185 N HIS A 152 SHEET 4 C 4 ARG A 287 SER A 290 -1 O ARG A 287 N GLU A 186 SHEET 1 D 2 VAL A 190 VAL A 192 0 SHEET 2 D 2 ARG A 199 LEU A 201 -1 O THR A 200 N ARG A 191 SHEET 1 E 7 THR B 6 LYS B 9 0 SHEET 2 E 7 ALA B 16 ASP B 19 -1 O GLN B 17 N LYS B 8 SHEET 3 E 7 VAL B 44 PHE B 47 1 O PHE B 46 N VAL B 18 SHEET 4 E 7 VAL B 245 ASP B 249 -1 O ILE B 247 N ILE B 45 SHEET 5 E 7 ALA B 110 THR B 117 -1 N LEU B 113 O ALA B 246 SHEET 6 E 7 LEU B 267 LEU B 273 -1 O LEU B 267 N THR B 117 SHEET 7 E 7 PRO B 68 ILE B 69 -1 N ILE B 69 O THR B 272 SHEET 1 F 3 THR B 235 TRP B 238 0 SHEET 2 F 3 THR B 125 ASN B 129 -1 N THR B 125 O TRP B 238 SHEET 3 F 3 THR B 253 ALA B 257 -1 O ARG B 256 N LEU B 126 SHEET 1 G 4 VAL B 207 PHE B 210 0 SHEET 2 G 4 TRP B 149 THR B 153 -1 N LEU B 151 O ARG B 208 SHEET 3 G 4 ARG B 184 PRO B 188 -1 O THR B 185 N HIS B 152 SHEET 4 G 4 ARG B 287 SER B 290 -1 O ARG B 287 N GLU B 186 SHEET 1 H 2 VAL B 190 VAL B 192 0 SHEET 2 H 2 ARG B 199 LEU B 201 -1 O THR B 200 N ARG B 191 LINK NE2 HIS A 98 FE FE A 299 1555 1555 2.15 LINK OD1 ASP A 100 FE FE A 299 1555 1555 2.19 LINK NE2 HIS A 255 FE FE A 299 1555 1555 2.13 LINK FE FE A 299 O HOH A 319 1555 1555 1.95 LINK NE2 HIS B 98 FE FE B 299 1555 1555 2.20 LINK OD1 ASP B 100 FE FE B 299 1555 1555 2.30 LINK NE2 HIS B 255 FE FE B 299 1555 1555 2.36 SITE 1 AC1 5 HIS B 98 ASP B 100 HIS B 255 ARG B 270 SITE 2 AC1 5 HOH B 351 SITE 1 AC2 5 HIS A 98 ASP A 100 HIS A 255 ARG A 270 SITE 2 AC2 5 HOH A 319 SITE 1 AC3 9 HIS A 52 HOH A 433 HOH A 456 THR B 117 SITE 2 AC3 9 LEU B 118 GLU B 241 SER B 242 HOH B 337 SITE 3 AC3 9 HOH B 410 SITE 1 AC4 5 TRP A 97 ARG A 256 HOH A 414 HOH A 425 SITE 2 AC4 5 HOH A 453 CRYST1 69.098 89.078 104.703 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009551 0.00000