HEADER ISOMERASE 14-JUL-11 3SWX TITLE CRYSTAL STRUCTURE OF A PROBABLE ENOYL-COA HYDRATASE/ISOMERASE FROM TITLE 2 MYCOBACTERIUM ABSCESSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ENOYL-COA HYDRATASE/ISOMERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: MAB_1493C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 13-SEP-23 3SWX 1 REMARK SEQADV REVDAT 3 08-NOV-17 3SWX 1 REMARK REVDAT 2 22-APR-15 3SWX 1 JRNL REVDAT 1 27-JUL-11 3SWX 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5788 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3713 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7902 ; 1.381 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9031 ; 0.963 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 771 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;31.073 ;23.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 847 ;12.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;19.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 949 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6644 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1185 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3834 ; 0.608 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1587 ; 0.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6070 ; 1.101 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1954 ; 1.803 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1832 ; 2.943 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4693 1.1383 15.8752 REMARK 3 T TENSOR REMARK 3 T11: 0.0076 T22: 0.0278 REMARK 3 T33: 0.0167 T12: 0.0099 REMARK 3 T13: 0.0006 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.4901 L22: 0.5985 REMARK 3 L33: 0.6561 L12: -0.0626 REMARK 3 L13: 0.1693 L23: -0.0823 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0278 S13: -0.0282 REMARK 3 S21: -0.0063 S22: 0.0152 S23: 0.0927 REMARK 3 S31: -0.0423 S32: -0.0929 S33: -0.0498 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 261 REMARK 3 ORIGIN FOR THE GROUP (A): 51.3948 -13.2786 18.8032 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0298 REMARK 3 T33: 0.0254 T12: 0.0226 REMARK 3 T13: -0.0040 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.5950 L22: 0.6329 REMARK 3 L33: 0.3711 L12: 0.0325 REMARK 3 L13: -0.2173 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0179 S13: -0.1115 REMARK 3 S21: -0.0191 S22: -0.0012 S23: -0.0400 REMARK 3 S31: 0.0546 S32: 0.0565 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 261 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9632 18.0259 18.4251 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0203 REMARK 3 T33: 0.0117 T12: -0.0325 REMARK 3 T13: 0.0149 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.7819 L22: 0.3598 REMARK 3 L33: 0.5818 L12: -0.0631 REMARK 3 L13: -0.1589 L23: -0.1072 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0008 S13: 0.0722 REMARK 3 S21: -0.0029 S22: 0.0065 S23: -0.0317 REMARK 3 S31: -0.1511 S32: 0.0920 S33: -0.0343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3SWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3AIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 27.9 MG/ML. CRYSTALANT: 45% REMARK 280 MPD, 0.1M BISTRIS PH 5.5, 0.2M CALCIUM CHLORIDE. CRYOPROTECTION: REMARK 280 25% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.20850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.79100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.20850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.79100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 594 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 VAL A 247 CG1 CG2 REMARK 470 GLN A 248 CG CD OE1 NE2 REMARK 470 PHE A 250 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 251 CG CD1 CD2 REMARK 470 SER A 252 OG REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 THR A 254 OG1 CG2 REMARK 470 THR A 255 OG1 CG2 REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LEU B 68 CG CD1 CD2 REMARK 470 SER B 70 OG REMARK 470 VAL B 71 CG1 CG2 REMARK 470 ILE B 75 CG1 CG2 CD1 REMARK 470 GLN B 76 CG CD OE1 NE2 REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 GLN B 248 CG CD OE1 NE2 REMARK 470 SER B 252 OG REMARK 470 ARG B 253 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 ASP C 3 CG OD1 OD2 REMARK 470 GLU C 5 CG CD OE1 OE2 REMARK 470 LYS C 25 CG CD CE NZ REMARK 470 ARG C 26 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 68 CG CD1 CD2 REMARK 470 VAL C 71 CG1 CG2 REMARK 470 GLN C 76 CG CD OE1 NE2 REMARK 470 GLU C 84 CG CD OE1 OE2 REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 ARG C 235 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 236 CG CD OE1 OE2 REMARK 470 VAL C 247 CG1 CG2 REMARK 470 GLN C 248 CG CD OE1 NE2 REMARK 470 PHE C 250 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 251 CG CD1 CD2 REMARK 470 SER C 252 OG REMARK 470 ARG C 253 CG CD NE CZ NH1 NH2 REMARK 470 THR C 254 OG1 CG2 REMARK 470 THR C 255 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 152 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG C 152 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C 152 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 4 -132.30 -85.01 REMARK 500 THR A 111 -106.81 41.96 REMARK 500 ILE A 140 -146.23 -123.03 REMARK 500 ALA B 72 -74.63 -46.83 REMARK 500 ALA B 73 -97.80 90.49 REMARK 500 THR B 111 -106.45 45.82 REMARK 500 ILE B 140 -148.06 -119.94 REMARK 500 ASN C 21 75.34 -153.16 REMARK 500 LEU C 68 -74.77 -17.79 REMARK 500 SER C 70 -65.53 16.22 REMARK 500 THR C 111 -105.34 47.23 REMARK 500 ILE C 140 -144.40 -116.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 3 TYR A 4 144.45 REMARK 500 ALA B 72 ALA B 73 48.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 262 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYABA.01530.B RELATED DB: TARGETDB DBREF 3SWX A 1 261 UNP B1MM02 B1MM02_MYCA9 1 261 DBREF 3SWX B 1 261 UNP B1MM02 B1MM02_MYCA9 1 261 DBREF 3SWX C 1 261 UNP B1MM02 B1MM02_MYCA9 1 261 SEQADV 3SWX GLY A -3 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX PRO A -2 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX GLY A -1 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX SER A 0 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX GLY B -3 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX PRO B -2 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX GLY B -1 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX SER B 0 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX GLY C -3 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX PRO C -2 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX GLY C -1 UNP B1MM02 EXPRESSION TAG SEQADV 3SWX SER C 0 UNP B1MM02 EXPRESSION TAG SEQRES 1 A 265 GLY PRO GLY SER MET SER ASP TYR GLU THR LEU ARG ILE SEQRES 2 A 265 ARG ARG ASP GLY TYR VAL LEU VAL ILE GLY LEU ASN ARG SEQRES 3 A 265 PRO ALA LYS ARG ASN ALA PHE ASP LYS THR MET LEU GLU SEQRES 4 A 265 GLU LEU ALA LEU ALA LEU GLY GLU TYR GLU THR ASP THR SEQRES 5 A 265 ASP LEU ARG ALA ALA VAL LEU TYR GLY GLU GLY PRO LEU SEQRES 6 A 265 PHE THR ALA GLY LEU ASP LEU ALA SER VAL ALA ALA GLU SEQRES 7 A 265 ILE GLN GLY GLY ALA SER LEU THR PRO GLU GLY GLY ILE SEQRES 8 A 265 ASN PRO TRP GLN VAL ASP GLY ARG GLN LEU SER LYS PRO SEQRES 9 A 265 LEU LEU VAL ALA VAL HIS GLY LYS VAL LEU THR LEU GLY SEQRES 10 A 265 ILE GLU LEU ALA LEU ALA ALA ASP ILE VAL ILE ALA ASP SEQRES 11 A 265 GLU THR ALA THR PHE ALA GLN LEU GLU VAL ASN ARG GLY SEQRES 12 A 265 ILE TYR PRO PHE GLY GLY ALA THR ILE ARG PHE PRO ARG SEQRES 13 A 265 THR ALA GLY TRP GLY ASN ALA MET ARG TRP MET LEU THR SEQRES 14 A 265 ALA ASP THR PHE ASP ALA VAL GLU ALA HIS ARG ILE GLY SEQRES 15 A 265 ILE VAL GLN GLU ILE VAL PRO VAL GLY GLU HIS VAL ASP SEQRES 16 A 265 THR ALA ILE ALA ILE ALA GLN THR ILE ALA ARG GLN ALA SEQRES 17 A 265 PRO LEU GLY VAL GLN ALA THR LEU ARG ASN ALA ARG LEU SEQRES 18 A 265 ALA VAL ARG GLU GLY ASP ALA ALA ALA GLU GLU GLN LEU SEQRES 19 A 265 VAL PRO THR VAL ARG GLU LEU PHE THR SER GLU ASP ALA SEQRES 20 A 265 THR LEU GLY VAL GLN ALA PHE LEU SER ARG THR THR ALA SEQRES 21 A 265 GLU PHE VAL GLY ARG SEQRES 1 B 265 GLY PRO GLY SER MET SER ASP TYR GLU THR LEU ARG ILE SEQRES 2 B 265 ARG ARG ASP GLY TYR VAL LEU VAL ILE GLY LEU ASN ARG SEQRES 3 B 265 PRO ALA LYS ARG ASN ALA PHE ASP LYS THR MET LEU GLU SEQRES 4 B 265 GLU LEU ALA LEU ALA LEU GLY GLU TYR GLU THR ASP THR SEQRES 5 B 265 ASP LEU ARG ALA ALA VAL LEU TYR GLY GLU GLY PRO LEU SEQRES 6 B 265 PHE THR ALA GLY LEU ASP LEU ALA SER VAL ALA ALA GLU SEQRES 7 B 265 ILE GLN GLY GLY ALA SER LEU THR PRO GLU GLY GLY ILE SEQRES 8 B 265 ASN PRO TRP GLN VAL ASP GLY ARG GLN LEU SER LYS PRO SEQRES 9 B 265 LEU LEU VAL ALA VAL HIS GLY LYS VAL LEU THR LEU GLY SEQRES 10 B 265 ILE GLU LEU ALA LEU ALA ALA ASP ILE VAL ILE ALA ASP SEQRES 11 B 265 GLU THR ALA THR PHE ALA GLN LEU GLU VAL ASN ARG GLY SEQRES 12 B 265 ILE TYR PRO PHE GLY GLY ALA THR ILE ARG PHE PRO ARG SEQRES 13 B 265 THR ALA GLY TRP GLY ASN ALA MET ARG TRP MET LEU THR SEQRES 14 B 265 ALA ASP THR PHE ASP ALA VAL GLU ALA HIS ARG ILE GLY SEQRES 15 B 265 ILE VAL GLN GLU ILE VAL PRO VAL GLY GLU HIS VAL ASP SEQRES 16 B 265 THR ALA ILE ALA ILE ALA GLN THR ILE ALA ARG GLN ALA SEQRES 17 B 265 PRO LEU GLY VAL GLN ALA THR LEU ARG ASN ALA ARG LEU SEQRES 18 B 265 ALA VAL ARG GLU GLY ASP ALA ALA ALA GLU GLU GLN LEU SEQRES 19 B 265 VAL PRO THR VAL ARG GLU LEU PHE THR SER GLU ASP ALA SEQRES 20 B 265 THR LEU GLY VAL GLN ALA PHE LEU SER ARG THR THR ALA SEQRES 21 B 265 GLU PHE VAL GLY ARG SEQRES 1 C 265 GLY PRO GLY SER MET SER ASP TYR GLU THR LEU ARG ILE SEQRES 2 C 265 ARG ARG ASP GLY TYR VAL LEU VAL ILE GLY LEU ASN ARG SEQRES 3 C 265 PRO ALA LYS ARG ASN ALA PHE ASP LYS THR MET LEU GLU SEQRES 4 C 265 GLU LEU ALA LEU ALA LEU GLY GLU TYR GLU THR ASP THR SEQRES 5 C 265 ASP LEU ARG ALA ALA VAL LEU TYR GLY GLU GLY PRO LEU SEQRES 6 C 265 PHE THR ALA GLY LEU ASP LEU ALA SER VAL ALA ALA GLU SEQRES 7 C 265 ILE GLN GLY GLY ALA SER LEU THR PRO GLU GLY GLY ILE SEQRES 8 C 265 ASN PRO TRP GLN VAL ASP GLY ARG GLN LEU SER LYS PRO SEQRES 9 C 265 LEU LEU VAL ALA VAL HIS GLY LYS VAL LEU THR LEU GLY SEQRES 10 C 265 ILE GLU LEU ALA LEU ALA ALA ASP ILE VAL ILE ALA ASP SEQRES 11 C 265 GLU THR ALA THR PHE ALA GLN LEU GLU VAL ASN ARG GLY SEQRES 12 C 265 ILE TYR PRO PHE GLY GLY ALA THR ILE ARG PHE PRO ARG SEQRES 13 C 265 THR ALA GLY TRP GLY ASN ALA MET ARG TRP MET LEU THR SEQRES 14 C 265 ALA ASP THR PHE ASP ALA VAL GLU ALA HIS ARG ILE GLY SEQRES 15 C 265 ILE VAL GLN GLU ILE VAL PRO VAL GLY GLU HIS VAL ASP SEQRES 16 C 265 THR ALA ILE ALA ILE ALA GLN THR ILE ALA ARG GLN ALA SEQRES 17 C 265 PRO LEU GLY VAL GLN ALA THR LEU ARG ASN ALA ARG LEU SEQRES 18 C 265 ALA VAL ARG GLU GLY ASP ALA ALA ALA GLU GLU GLN LEU SEQRES 19 C 265 VAL PRO THR VAL ARG GLU LEU PHE THR SER GLU ASP ALA SEQRES 20 C 265 THR LEU GLY VAL GLN ALA PHE LEU SER ARG THR THR ALA SEQRES 21 C 265 GLU PHE VAL GLY ARG HET EDO B 262 4 HET GOL C 262 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 EDO C2 H6 O2 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *401(H2 O) HELIX 1 1 ARG A 22 ARG A 26 5 5 HELIX 2 2 ASP A 30 ASP A 47 1 18 HELIX 3 3 ASP A 67 GLN A 76 1 10 HELIX 4 4 THR A 111 ALA A 120 1 10 HELIX 5 5 LEU A 134 GLY A 139 5 6 HELIX 6 6 GLY A 145 GLY A 155 1 11 HELIX 7 7 GLY A 155 LEU A 164 1 10 HELIX 8 8 ALA A 171 ILE A 177 1 7 HELIX 9 9 GLU A 188 GLN A 203 1 16 HELIX 10 10 ALA A 204 GLY A 222 1 19 HELIX 11 11 GLY A 222 THR A 239 1 18 HELIX 12 12 SER A 240 SER A 252 1 13 HELIX 13 13 ARG B 22 ARG B 26 5 5 HELIX 14 14 ASP B 30 ASP B 47 1 18 HELIX 15 15 LEU B 68 SER B 70 5 3 HELIX 16 16 VAL B 71 GLY B 78 1 8 HELIX 17 17 THR B 111 ALA B 120 1 10 HELIX 18 18 LEU B 134 GLY B 139 5 6 HELIX 19 19 GLY B 145 GLY B 155 1 11 HELIX 20 20 GLY B 155 LEU B 164 1 10 HELIX 21 21 ALA B 171 ILE B 177 1 7 HELIX 22 22 GLU B 188 ARG B 202 1 15 HELIX 23 23 ALA B 204 GLY B 222 1 19 HELIX 24 24 GLY B 222 THR B 239 1 18 HELIX 25 25 SER B 240 SER B 252 1 13 HELIX 26 26 ARG C 22 ARG C 26 5 5 HELIX 27 27 ASP C 30 ASP C 47 1 18 HELIX 28 28 ASP C 67 GLY C 77 1 11 HELIX 29 29 THR C 111 ALA C 120 1 10 HELIX 30 30 LEU C 134 GLY C 139 5 6 HELIX 31 31 GLY C 145 GLY C 155 1 11 HELIX 32 32 GLY C 155 LEU C 164 1 10 HELIX 33 33 ALA C 171 ILE C 177 1 7 HELIX 34 34 GLU C 188 ARG C 202 1 15 HELIX 35 35 ALA C 204 GLY C 222 1 19 HELIX 36 36 GLY C 222 THR C 239 1 18 HELIX 37 37 SER C 240 ARG C 253 1 14 SHEET 1 A 6 LEU A 7 ASP A 12 0 SHEET 2 A 6 VAL A 15 LEU A 20 -1 O VAL A 15 N ASP A 12 SHEET 3 A 6 ALA A 52 GLY A 57 1 O VAL A 54 N ILE A 18 SHEET 4 A 6 LEU A 101 VAL A 105 1 O LEU A 102 N ALA A 53 SHEET 5 A 6 ILE A 122 ASP A 126 1 O ILE A 124 N VAL A 105 SHEET 6 A 6 GLU A 182 VAL A 184 1 O GLU A 182 N ALA A 125 SHEET 1 B 3 LYS A 108 LEU A 110 0 SHEET 2 B 3 THR A 130 ALA A 132 1 O THR A 130 N VAL A 109 SHEET 3 B 3 THR A 168 ASP A 170 -1 O PHE A 169 N PHE A 131 SHEET 1 C 6 LEU B 7 ASP B 12 0 SHEET 2 C 6 VAL B 15 LEU B 20 -1 O VAL B 17 N ARG B 10 SHEET 3 C 6 ALA B 52 GLY B 57 1 O VAL B 54 N ILE B 18 SHEET 4 C 6 LEU B 101 VAL B 105 1 O LEU B 102 N ALA B 53 SHEET 5 C 6 ILE B 122 ASP B 126 1 O ILE B 122 N VAL B 103 SHEET 6 C 6 GLU B 182 VAL B 184 1 O GLU B 182 N ALA B 125 SHEET 1 D 3 LYS B 108 LEU B 110 0 SHEET 2 D 3 THR B 130 ALA B 132 1 O THR B 130 N VAL B 109 SHEET 3 D 3 PHE B 169 ASP B 170 -1 O PHE B 169 N PHE B 131 SHEET 1 E 6 LEU C 7 ASP C 12 0 SHEET 2 E 6 VAL C 15 LEU C 20 -1 O GLY C 19 N ARG C 8 SHEET 3 E 6 ALA C 52 GLY C 57 1 O VAL C 54 N ILE C 18 SHEET 4 E 6 LEU C 101 VAL C 105 1 O LEU C 102 N ALA C 53 SHEET 5 E 6 ILE C 122 ASP C 126 1 O ILE C 124 N VAL C 105 SHEET 6 E 6 GLU C 182 VAL C 184 1 O GLU C 182 N ALA C 125 SHEET 1 F 3 LYS C 108 LEU C 110 0 SHEET 2 F 3 THR C 130 ALA C 132 1 O THR C 130 N VAL C 109 SHEET 3 F 3 THR C 168 ASP C 170 -1 O PHE C 169 N PHE C 131 CISPEP 1 GLU B 84 GLY B 85 0 -26.75 CISPEP 2 ALA C 69 SER C 70 0 -21.09 SITE 1 AC1 4 ASN C 88 VAL C 92 PHE C 143 HOH C 485 SITE 1 AC2 2 ASN B 88 HOH B 312 CRYST1 126.417 77.582 85.759 90.00 123.61 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007910 0.000000 0.005258 0.00000 SCALE2 0.000000 0.012890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014001 0.00000