HEADER TRANSPORT PROTEIN 14-JUL-11 3SWY TITLE CNGA3 626-672 CONTAINING CLZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC NUCLEOTIDE-GATED CATION CHANNEL ALPHA-3; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CLZ DOMAIN (UNP RESIDUES 626-669); COMPND 5 SYNONYM: CONE PHOTORECEPTOR CGMP-GATED CHANNEL SUBUNIT ALPHA, CYCLIC COMPND 6 NUCLEOTIDE-GATED CHANNEL ALPHA-3, CNG CHANNEL ALPHA-3, CNG-3, CNG3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CNCG3, CNGA3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS COILED-COIL, ASSEMBLY DOMAIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.G.SHUART,Y.HAITIN,S.S.CAMP,K.D.BLACK,W.N.ZAGOTTA REVDAT 2 13-SEP-23 3SWY 1 SEQADV REVDAT 1 14-SEP-11 3SWY 0 JRNL AUTH N.G.SHUART,Y.HAITIN,S.S.CAMP,K.D.BLACK,W.N.ZAGOTTA JRNL TITL MOLECULAR MECHANISM FOR 3:1 SUBUNIT STOICHIOMETRY OF ROD JRNL TITL 2 CYCLIC NUCLEOTIDE-GATED ION CHANNELS. JRNL REF NAT COMMUN V. 2 457 2011 JRNL REFN ESSN 2041-1723 JRNL PMID 21878911 JRNL DOI 10.1038/NCOMMS1466 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 9704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2205 - 2.7399 0.99 3228 181 0.1938 0.2058 REMARK 3 2 2.7399 - 2.1749 0.99 3157 156 0.1867 0.2250 REMARK 3 3 2.1749 - 1.9000 0.89 2854 128 0.2296 0.3388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 53.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64480 REMARK 3 B22 (A**2) : 6.24060 REMARK 3 B33 (A**2) : 6.05210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.65590 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1073 REMARK 3 ANGLE : 1.058 1434 REMARK 3 CHIRALITY : 0.084 171 REMARK 3 PLANARITY : 0.004 184 REMARK 3 DIHEDRAL : 16.102 415 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -15.7332 19.6880 43.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.0633 REMARK 3 T33: 0.1623 T12: 0.0038 REMARK 3 T13: 0.0020 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.3944 L22: 0.6184 REMARK 3 L33: 0.9767 L12: 0.3278 REMARK 3 L13: 0.4243 L23: -0.1024 REMARK 3 S TENSOR REMARK 3 S11: -0.1802 S12: -0.0963 S13: 0.2864 REMARK 3 S21: 0.0486 S22: -0.0764 S23: 0.0038 REMARK 3 S31: -0.1614 S32: -0.1052 S33: 0.0551 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -11.2205 15.9658 38.3699 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1357 REMARK 3 T33: 0.1334 T12: 0.0067 REMARK 3 T13: 0.0190 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.9130 L22: 0.2797 REMARK 3 L33: 0.7416 L12: 0.2504 REMARK 3 L13: 0.5685 L23: 0.0957 REMARK 3 S TENSOR REMARK 3 S11: -0.1090 S12: 0.2726 S13: 0.2176 REMARK 3 S21: -0.0282 S22: 0.0068 S23: -0.0448 REMARK 3 S31: 0.0591 S32: 0.1982 S33: 0.0476 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -15.8563 11.2700 43.1086 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.0928 REMARK 3 T33: 0.1159 T12: -0.0340 REMARK 3 T13: -0.0043 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.8064 L22: 0.3652 REMARK 3 L33: 0.2300 L12: -0.1700 REMARK 3 L13: -0.0733 L23: -0.1132 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: -0.0763 S13: -0.1406 REMARK 3 S21: -0.0314 S22: -0.0313 S23: 0.0301 REMARK 3 S31: 0.2722 S32: -0.0906 S33: -0.0314 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.324 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : 0.26600 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZVB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG3350, 200 MM POTASSIUM REMARK 280 ACETATE, PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.82500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 15 CG OD1 OD2 REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 41 CG CD OE1 NE2 REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 GLU C 8 CG CD OE1 OE2 REMARK 470 GLN C 9 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 33 O HOH A 86 1.84 REMARK 500 NZ LYS A 36 O HOH A 95 1.85 REMARK 500 O VAL B 46 O HOH B 91 1.97 REMARK 500 O HOH C 99 O HOH C 100 2.04 REMARK 500 O HOH C 81 O HOH C 89 2.15 REMARK 500 CE MET A 33 O HOH A 86 2.16 REMARK 500 O HOH A 68 O HOH A 104 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 59 O HOH B 70 2557 1.96 REMARK 500 O HOH A 101 O HOH C 85 2557 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SWF RELATED DB: PDB REMARK 900 CNGA1 621-690 CONTAINING CLZ DOMAIN DBREF 3SWY A 3 46 UNP Q16281 CNGA3_HUMAN 626 669 DBREF 3SWY B 3 46 UNP Q16281 CNGA3_HUMAN 626 669 DBREF 3SWY C 3 46 UNP Q16281 CNGA3_HUMAN 626 669 SEQADV 3SWY GLY A 1 UNP Q16281 EXPRESSION TAG SEQADV 3SWY ALA A 2 UNP Q16281 EXPRESSION TAG SEQADV 3SWY GLY B 1 UNP Q16281 EXPRESSION TAG SEQADV 3SWY ALA B 2 UNP Q16281 EXPRESSION TAG SEQADV 3SWY GLY C 1 UNP Q16281 EXPRESSION TAG SEQADV 3SWY ALA C 2 UNP Q16281 EXPRESSION TAG SEQRES 1 A 46 GLY ALA LEU GLU GLU LYS VAL GLU GLN LEU GLY SER SER SEQRES 2 A 46 LEU ASP THR LEU GLN THR ARG PHE ALA ARG LEU LEU ALA SEQRES 3 A 46 GLU TYR ASN ALA THR GLN MET LYS MET LYS GLN ARG LEU SEQRES 4 A 46 SER GLN LEU GLU SER GLN VAL SEQRES 1 B 46 GLY ALA LEU GLU GLU LYS VAL GLU GLN LEU GLY SER SER SEQRES 2 B 46 LEU ASP THR LEU GLN THR ARG PHE ALA ARG LEU LEU ALA SEQRES 3 B 46 GLU TYR ASN ALA THR GLN MET LYS MET LYS GLN ARG LEU SEQRES 4 B 46 SER GLN LEU GLU SER GLN VAL SEQRES 1 C 46 GLY ALA LEU GLU GLU LYS VAL GLU GLN LEU GLY SER SER SEQRES 2 C 46 LEU ASP THR LEU GLN THR ARG PHE ALA ARG LEU LEU ALA SEQRES 3 C 46 GLU TYR ASN ALA THR GLN MET LYS MET LYS GLN ARG LEU SEQRES 4 C 46 SER GLN LEU GLU SER GLN VAL FORMUL 4 HOH *115(H2 O) HELIX 1 1 GLY A 1 VAL A 46 1 46 HELIX 2 2 GLY B 1 VAL B 46 1 46 HELIX 3 3 GLY C 1 VAL C 46 1 46 CRYST1 36.750 37.650 49.580 90.00 110.88 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027211 0.000000 0.010380 0.00000 SCALE2 0.000000 0.026560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021587 0.00000