HEADER OXIDOREDUCTASE 14-JUL-11 3SX6 TITLE CRYSTAL STRUCTURE OF SULFIDE:QUINONE OXIDOREDUCTASE CYS356ALA VARIANT TITLE 2 FROM ACIDITHIOBACILLUS FERROOXIDANS COMPLEXED WITH DECYLUBIQUINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIDE-QUINONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SQR,SULFIDE:QUINONE OXIDOREDUCTASE; COMPND 5 EC: 1.8.5.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS ATCC 23270; SOURCE 3 ORGANISM_TAXID: 243159; SOURCE 4 STRAIN: ATCC 23270 / DSM 14882 / NCIB 8455; SOURCE 5 GENE: AFE_1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFIDE:QUINONE OXIDOREDUCTASE, CYS356ALA VARIANT, INTEGRAL MONOTOPIC KEYWDS 2 MEMBRANE PROTEIN, COMPLEX WITH SULFIDE AND DECYLUBIQUINONE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.CHERNEY,Y.ZHANG,M.N.G.JAMES,J.H.WEINER REVDAT 3 27-MAR-24 3SX6 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV SEQRES HET HETNAM REVDAT 3 3 1 FORMUL LINK SITE ATOM REVDAT 2 13-JUN-12 3SX6 1 JRNL REVDAT 1 16-MAY-12 3SX6 0 JRNL AUTH M.M.CHERNEY,Y.ZHANG,M.N.JAMES,J.H.WEINER JRNL TITL STRUCTURE-ACTIVITY CHARACTERIZATION OF SULFIDE:QUINONE JRNL TITL 2 OXIDOREDUCTASE VARIANTS. JRNL REF J.STRUCT.BIOL. V. 178 319 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22542586 JRNL DOI 10.1016/J.JSB.2012.04.007 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 46540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1440 - 4.6116 0.97 2999 143 0.1618 0.1823 REMARK 3 2 4.6116 - 3.6624 0.98 2842 170 0.1347 0.1554 REMARK 3 3 3.6624 - 3.2001 0.99 2823 160 0.1682 0.2254 REMARK 3 4 3.2001 - 2.9077 0.99 2825 146 0.1971 0.2407 REMARK 3 5 2.9077 - 2.6995 0.99 2803 144 0.2058 0.2352 REMARK 3 6 2.6995 - 2.5404 0.99 2817 131 0.2009 0.2505 REMARK 3 7 2.5404 - 2.4132 1.00 2803 164 0.1957 0.2731 REMARK 3 8 2.4132 - 2.3082 1.00 2804 144 0.1879 0.2698 REMARK 3 9 2.3082 - 2.2194 0.99 2766 171 0.1909 0.2370 REMARK 3 10 2.2194 - 2.1428 0.99 2748 140 0.1899 0.2707 REMARK 3 11 2.1428 - 2.0758 0.97 2700 147 0.1911 0.2696 REMARK 3 12 2.0758 - 2.0165 0.94 2615 144 0.1990 0.2149 REMARK 3 13 2.0165 - 1.9634 0.90 2505 142 0.1988 0.2352 REMARK 3 14 1.9634 - 1.9156 0.85 2384 114 0.2139 0.2460 REMARK 3 15 1.9156 - 1.8720 0.78 2186 101 0.2446 0.3276 REMARK 3 16 1.8720 - 1.8322 0.69 1917 114 0.2864 0.3727 REMARK 3 17 1.8322 - 1.7955 0.59 1627 101 0.3247 0.3518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.12120 REMARK 3 B22 (A**2) : -6.12120 REMARK 3 B33 (A**2) : 12.24230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3456 REMARK 3 ANGLE : 1.078 4688 REMARK 3 CHIRALITY : 0.076 504 REMARK 3 PLANARITY : 0.008 589 REMARK 3 DIHEDRAL : 20.593 1313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1:161) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5840 -26.7760 12.1828 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.3047 REMARK 3 T33: 0.1836 T12: -0.0660 REMARK 3 T13: 0.0349 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.5461 L22: 1.6119 REMARK 3 L33: 0.2914 L12: 0.6045 REMARK 3 L13: -0.2041 L23: -0.3266 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: -0.1325 S13: -0.0857 REMARK 3 S21: 0.3068 S22: -0.0556 S23: 0.1755 REMARK 3 S31: 0.0303 S32: -0.1562 S33: -0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 162:232) REMARK 3 ORIGIN FOR THE GROUP (A): 64.4777 -17.1586 6.2074 REMARK 3 T TENSOR REMARK 3 T11: 0.1998 T22: 0.2161 REMARK 3 T33: 0.3858 T12: -0.0339 REMARK 3 T13: -0.0479 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 0.7048 L22: 1.1121 REMARK 3 L33: 0.2051 L12: 0.3109 REMARK 3 L13: -0.2808 L23: -0.1383 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.0595 S13: -0.0464 REMARK 3 S21: 0.0161 S22: -0.2009 S23: -0.6700 REMARK 3 S31: -0.0479 S32: 0.1390 S33: 0.0261 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 233:341) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5926 -25.8538 -2.5480 REMARK 3 T TENSOR REMARK 3 T11: 0.2167 T22: 0.2830 REMARK 3 T33: 0.1657 T12: -0.0493 REMARK 3 T13: -0.0033 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.5055 L22: 1.4912 REMARK 3 L33: 0.4488 L12: 0.7270 REMARK 3 L13: -0.3655 L23: -0.5138 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.1739 S13: -0.0660 REMARK 3 S21: -0.2062 S22: 0.0719 S23: -0.0612 REMARK 3 S31: 0.1874 S32: -0.1583 S33: 0.0042 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 342:377) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4886 -10.2781 -1.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.3165 REMARK 3 T33: 0.2512 T12: -0.0192 REMARK 3 T13: -0.0160 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 0.6349 L22: 1.6406 REMARK 3 L33: 0.3510 L12: 0.6005 REMARK 3 L13: -0.0587 L23: -0.4376 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: -0.0911 S13: 0.0962 REMARK 3 S21: -0.1004 S22: 0.1678 S23: 0.2228 REMARK 3 S31: 0.0039 S32: -0.3123 S33: -0.0297 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 378:410) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1319 -7.2394 11.6927 REMARK 3 T TENSOR REMARK 3 T11: 0.3226 T22: 0.3057 REMARK 3 T33: 0.3026 T12: 0.0011 REMARK 3 T13: 0.0867 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.7355 L22: 1.0252 REMARK 3 L33: 0.5379 L12: 0.6578 REMARK 3 L13: -0.6106 L23: -0.5731 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: -0.0773 S13: 0.2586 REMARK 3 S21: 0.3862 S22: 0.0148 S23: 0.2096 REMARK 3 S31: -0.0837 S32: -0.0857 S33: -0.0711 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DCM, SI(111) CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY BENT REMARK 200 SECOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : 0.74900 REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 600, 0.1 M BIS-TRIS BUFFER,0.1 REMARK 280 M MGSO4, 0.05% DDM, 2 MM DECYLUBIQUINONE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.34200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.17100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.34200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.17100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.34200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.17100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.34200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.17100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 GLY A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 ARG A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 THR A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 LYS A 432 REMARK 465 ALA A 433 REMARK 465 SER A 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 1 56.68 -148.65 REMARK 500 ALA A 9 65.45 -111.35 REMARK 500 ASP A 206 43.66 -99.45 REMARK 500 PRO A 371 -153.82 -79.24 REMARK 500 SER A 407 -56.43 -163.17 REMARK 500 GLU A 408 164.30 -47.36 REMARK 500 PHE A 410 -26.91 126.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 646 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 5.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCQ A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KPG RELATED DB: PDB REMARK 900 RELATED ID: 3KPI RELATED DB: PDB REMARK 900 RELATED ID: 3KPK RELATED DB: PDB REMARK 900 RELATED ID: 3SXI RELATED DB: PDB REMARK 900 RELATED ID: 3SY4 RELATED DB: PDB REMARK 900 RELATED ID: 3SYI RELATED DB: PDB REMARK 900 RELATED ID: 3SZ0 RELATED DB: PDB REMARK 900 RELATED ID: 3SZC RELATED DB: PDB REMARK 900 RELATED ID: 3SZF RELATED DB: PDB DBREF 3SX6 A 2 434 UNP B7JBP8 SQRD_ACIF2 2 434 SEQADV 3SX6 MET A -2 UNP B7JBP8 INITIATING METHIONINE SEQADV 3SX6 ARG A -1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SX6 GLY A 0 UNP B7JBP8 EXPRESSION TAG SEQADV 3SX6 SER A 1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SX6 ALA A 356 UNP B7JBP8 CYS 356 ENGINEERED MUTATION SEQRES 1 A 437 MET ARG GLY SER ALA HIS VAL VAL ILE LEU GLY ALA GLY SEQRES 2 A 437 THR GLY GLY MET PRO ALA ALA TYR GLU MET LYS GLU ALA SEQRES 3 A 437 LEU GLY SER GLY HIS GLU VAL THR LEU ILE SER ALA ASN SEQRES 4 A 437 ASP TYR PHE GLN PHE VAL PRO SER ASN PRO TRP VAL GLY SEQRES 5 A 437 VAL GLY TRP LYS GLU ARG ASP ASP ILE ALA PHE PRO ILE SEQRES 6 A 437 ARG HIS TYR VAL GLU ARG LYS GLY ILE HIS PHE ILE ALA SEQRES 7 A 437 GLN SER ALA GLU GLN ILE ASP ALA GLU ALA GLN ASN ILE SEQRES 8 A 437 THR LEU ALA ASP GLY ASN THR VAL HIS TYR ASP TYR LEU SEQRES 9 A 437 MET ILE ALA THR GLY PRO LYS LEU ALA PHE GLU ASN VAL SEQRES 10 A 437 PRO GLY SER ASP PRO HIS GLU GLY PRO VAL GLN SER ILE SEQRES 11 A 437 CYS THR VAL ASP HIS ALA GLU ARG ALA PHE ALA GLU TYR SEQRES 12 A 437 GLN ALA LEU LEU ARG GLU PRO GLY PRO ILE VAL ILE GLY SEQRES 13 A 437 ALA MET ALA GLY ALA SER TSY PHE GLY PRO ALA TYR GLU SEQRES 14 A 437 TYR ALA MET ILE VAL ALA SER ASP LEU LYS LYS ARG GLY SEQRES 15 A 437 MET ARG ASP LYS ILE PRO SER PHE THR PHE ILE THR SER SEQRES 16 A 437 GLU PRO TYR ILE GLY HIS LEU GLY ILE GLN GLY VAL GLY SEQRES 17 A 437 ASP SER LYS GLY ILE LEU THR LYS GLY LEU LYS GLU GLU SEQRES 18 A 437 GLY ILE GLU ALA TYR THR ASN CYS LYS VAL THR LYS VAL SEQRES 19 A 437 GLU ASP ASN LYS MET TYR VAL THR GLN VAL ASP GLU LYS SEQRES 20 A 437 GLY GLU THR ILE LYS GLU MET VAL LEU PRO VAL LYS PHE SEQRES 21 A 437 GLY MET MET ILE PRO ALA PHE LYS GLY VAL PRO ALA VAL SEQRES 22 A 437 ALA GLY VAL GLU GLY LEU CYS ASN PRO GLY GLY PHE VAL SEQRES 23 A 437 LEU VAL ASP GLU HIS GLN ARG SER LYS LYS TYR ALA ASN SEQRES 24 A 437 ILE PHE ALA ALA GLY ILE ALA ILE ALA ILE PRO PRO VAL SEQRES 25 A 437 GLU THR THR PRO VAL PRO THR GLY ALA PRO LYS THR GLY SEQRES 26 A 437 TYR MET ILE GLU SER MET VAL SER ALA ALA VAL HIS ASN SEQRES 27 A 437 ILE LYS ALA ASP LEU GLU GLY ARG LYS GLY GLU GLN THR SEQRES 28 A 437 MET GLY THR TRP ASN ALA VAL ALA PHE ALA ASP MET GLY SEQRES 29 A 437 ASP ARG GLY ALA ALA PHE ILE ALA LEU PRO GLN LEU LYS SEQRES 30 A 437 PRO ARG LYS VAL ASP VAL PHE ALA TYR GLY ARG TRP VAL SEQRES 31 A 437 HIS LEU ALA LYS VAL ALA PHE GLU LYS TYR PHE ILE ARG SEQRES 32 A 437 LYS MET LYS MET GLY VAL SER GLU PRO PHE TYR GLU LYS SEQRES 33 A 437 VAL LEU PHE LYS MET MET GLY ILE THR ARG LEU LYS GLU SEQRES 34 A 437 GLU ASP THR HIS ARG LYS ALA SER MODRES 3SX6 TSY A 160 CYS MODIFIED RESIDUE HET TSY A 160 8 HET FAD A 500 53 HET LMT A 501 35 HET DCQ A 502 23 HET SO4 A 503 5 HET SO4 A 504 5 HET H2S A 505 1 HET H2S A 508 1 HETNAM TSY (2S)-2-AMINO-3-TRISULFANYLPROPANOIC ACID HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM DCQ 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4- HETNAM 2 DCQ DIONE HETNAM SO4 SULFATE ION HETNAM H2S HYDROSULFURIC ACID HETSYN DCQ DECYLUBIQUINONE HETSYN H2S HYDROGEN SULFIDE FORMUL 1 TSY C3 H7 N O2 S3 FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 LMT C24 H46 O11 FORMUL 4 DCQ C19 H30 O4 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 H2S 2(H2 S) FORMUL 9 HOH *341(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 SER A 26 HIS A 28 5 3 HELIX 3 3 SER A 44 VAL A 50 1 7 HELIX 4 4 GLU A 54 ILE A 58 1 5 HELIX 5 5 ILE A 62 ARG A 68 1 7 HELIX 6 6 PHE A 111 VAL A 114 5 4 HELIX 7 7 THR A 129 GLU A 146 1 18 HELIX 8 8 PHE A 161 ARG A 178 1 18 HELIX 9 9 MET A 180 ILE A 184 5 5 HELIX 10 10 ASP A 206 GLU A 218 1 13 HELIX 11 11 VAL A 267 GLY A 272 1 6 HELIX 12 12 GLY A 301 ILE A 304 5 4 HELIX 13 13 THR A 321 LEU A 340 1 20 HELIX 14 14 ARG A 385 GLY A 405 1 21 HELIX 15 15 GLU A 412 LYS A 417 1 6 SHEET 1 A 5 HIS A 72 ILE A 74 0 SHEET 2 A 5 GLU A 29 ILE A 33 1 N LEU A 32 O HIS A 72 SHEET 3 A 5 HIS A 3 LEU A 7 1 N ILE A 6 O THR A 31 SHEET 4 A 5 TYR A 100 ILE A 103 1 O MET A 102 N VAL A 5 SHEET 5 A 5 ILE A 297 ALA A 299 1 O PHE A 298 N LEU A 101 SHEET 1 B 2 TYR A 38 GLN A 40 0 SHEET 2 B 2 ALA A 59 PRO A 61 -1 O PHE A 60 N PHE A 39 SHEET 1 C 3 ALA A 78 ASP A 82 0 SHEET 2 C 3 ASN A 87 LEU A 90 -1 O THR A 89 N GLU A 79 SHEET 3 C 3 THR A 95 HIS A 97 -1 O VAL A 96 N ILE A 88 SHEET 1 D 2 LYS A 108 LEU A 109 0 SHEET 2 D 2 PHE A 264 LYS A 265 -1 O LYS A 265 N LYS A 108 SHEET 1 E 5 VAL A 124 GLN A 125 0 SHEET 2 E 5 PHE A 257 ILE A 261 1 O GLY A 258 N GLN A 125 SHEET 3 E 5 ILE A 150 ALA A 154 1 N GLY A 153 O ILE A 261 SHEET 4 E 5 PHE A 187 THR A 191 1 O THR A 188 N ILE A 152 SHEET 5 E 5 GLU A 221 TYR A 223 1 O GLU A 221 N PHE A 189 SHEET 1 F 3 CYS A 226 GLU A 232 0 SHEET 2 F 3 LYS A 235 VAL A 241 -1 O THR A 239 N LYS A 227 SHEET 3 F 3 THR A 247 PRO A 254 -1 O LYS A 249 N GLN A 240 SHEET 1 G 3 ALA A 354 ASP A 359 0 SHEET 2 G 3 GLY A 364 LEU A 370 -1 O ALA A 365 N ALA A 358 SHEET 3 G 3 VAL A 378 GLY A 384 -1 O ALA A 382 N ALA A 366 LINK C SER A 159 N TSY A 160 1555 1555 1.33 LINK C TSY A 160 N PHE A 161 1555 1555 1.33 CISPEP 1 LEU A 370 PRO A 371 0 -5.70 CISPEP 2 LYS A 374 PRO A 375 0 -0.41 SITE 1 AC1 36 LEU A 7 GLY A 8 ALA A 9 GLY A 10 SITE 2 AC1 36 THR A 11 GLY A 12 SER A 34 ALA A 35 SITE 3 AC1 36 VAL A 42 SER A 77 ALA A 78 ALA A 104 SITE 4 AC1 36 THR A 105 GLY A 106 PRO A 107 PRO A 163 SITE 5 AC1 36 GLY A 301 ILE A 302 LYS A 320 THR A 321 SITE 6 AC1 36 GLY A 322 ILE A 325 VAL A 355 PHE A 357 SITE 7 AC1 36 HOH A 435 HOH A 436 HOH A 461 HOH A 489 SITE 8 AC1 36 DCQ A 502 HOH A 510 HOH A 546 HOH A 625 SITE 9 AC1 36 HOH A 645 HOH A 651 HOH A 764 HOH A 783 SITE 1 AC2 15 GLY A 205 ASP A 206 ILE A 210 ALA A 356 SITE 2 AC2 15 ALA A 358 ALA A 365 TYR A 383 HOH A 460 SITE 3 AC2 15 HOH A 462 HOH A 466 HOH A 468 HOH A 469 SITE 4 AC2 15 HOH A 473 SO4 A 504 HOH A 703 SITE 1 AC3 10 PRO A 43 GLY A 322 TYR A 323 PHE A 357 SITE 2 AC3 10 ILE A 368 PHE A 394 PHE A 398 TYR A 411 SITE 3 AC3 10 FAD A 500 HOH A 651 SITE 1 AC4 6 MET A -2 HIS A 3 HIS A 97 ASP A 99 SITE 2 AC4 6 HOH A 637 HOH A 774 SITE 1 AC5 7 ARG A 363 GLY A 384 ARG A 385 HOH A 462 SITE 2 AC5 7 LMT A 501 HOH A 542 HOH A 706 SITE 1 AC6 3 GLY A 162 HOH A 485 HOH A 527 SITE 1 AC8 2 H2S A 505 HOH A 783 SITE 1 AC9 5 LEU A 109 SER A 126 CYS A 128 THR A 129 SITE 2 AC9 5 HIS A 132 CRYST1 149.828 149.828 81.513 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006674 0.003853 0.000000 0.00000 SCALE2 0.000000 0.007707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012268 0.00000