HEADER TRANSFERASE 14-JUL-11 3SXA TITLE CRYSTAL STRUCTURE OF ABBB+UDP+GAL WITH GLYCEROL AS THE CRYOPROTECTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HISTO-BLOOD GROUP B TRANSFERASE (UNP RESIDUES 64-354); COMPND 5 SYNONYM: GTB, FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, COMPND 6 FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE, COMPND 7 GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- COMPND 8 ACETYLGALACTOSAMINYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE COMPND 9 ALPHA-GALACTOSYLTRANSFERASE, NAGAT; COMPND 10 EC: 2.4.1.37; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCQ DELTA 1AC KEYWDS RETAINING GLYCOSYLTRANSFERASE, GLYCOPROTEIN, BLOOD GROUP ANTIGEN, ABO KEYWDS 2 ROSSMANN FOLD, METAL-BINDING, MANGANESE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.JOHAL,S.V.EVANS REVDAT 5 13-SEP-23 3SXA 1 HETSYN REVDAT 4 29-JUL-20 3SXA 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 07-MAR-18 3SXA 1 REMARK REVDAT 2 28-MAR-12 3SXA 1 JRNL REVDAT 1 29-FEB-12 3SXA 0 JRNL AUTH A.R.JOHAL,B.SCHUMAN,J.A.ALFARO,S.BORISOVA,N.O.SETO,S.V.EVANS JRNL TITL SEQUENCE-DEPENDENT EFFECTS OF CRYOPROTECTANTS ON THE ACTIVE JRNL TITL 2 SITES OF THE HUMAN ABO(H) BLOOD GROUP A AND B JRNL TITL 3 GLYCOSYLTRANSFERASES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 268 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22349229 JRNL DOI 10.1107/S0907444912001801 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 48982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3284 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.5570 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.5350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2512 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3410 ; 2.365 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 6.309 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;34.691 ;22.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 415 ;13.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1906 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1457 ; 1.439 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2372 ; 2.265 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1055 ; 3.419 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1038 ; 5.023 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3SXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : OSMIC BLUE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.4SSI REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48983 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 74.953 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.330 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.61 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LZ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% PEG4000, 5% MPD, 100 MM AMMONIUM REMARK 280 SULFATE, 70 MM SODIUM CHLORIDE, 50 MM ADA, PH 7.6, 30 MM SODIUM REMARK 280 ACETATE, PH 4.6, 5 MM MANGANESE CHLORIDE, WITH 30% GLYCEROL AS REMARK 280 CRYOPROTECTANT, HANGING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.24000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.24000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.80500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.24000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.87000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.80500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.24000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.87000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.48000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -39.80500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 194 REMARK 465 PHE A 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER A 193 O HOH A 423 1.68 REMARK 500 O HOH A 429 O HOH A 513 1.74 REMARK 500 OE1 GLU A 135 O HOH A 412 1.75 REMARK 500 O LEU A 329 O HOH A 414 1.79 REMARK 500 CE LYS A 125 O HOH A 399 1.80 REMARK 500 O HOH A 416 O HOH A 527 1.80 REMARK 500 O HOH A 414 O HOH A 455 1.90 REMARK 500 O HOH A 460 O HOH A 498 1.95 REMARK 500 CG MET A 289 O HOH A 418 2.00 REMARK 500 CG GLU A 197 O HOH A 423 2.02 REMARK 500 SG CYS A 196 O HOH A 535 2.09 REMARK 500 O CYS A 80 O HOH A 400 2.14 REMARK 500 N VAL A 64 O HOH A 424 2.18 REMARK 500 SD MET A 63 NE2 GLN A 112 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 460 O HOH A 507 3454 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 135 CG GLU A 135 CD 0.103 REMARK 500 GLU A 135 CD GLU A 135 OE1 -0.108 REMARK 500 GLU A 135 CD GLU A 135 OE2 0.084 REMARK 500 TYR A 206 CZ TYR A 206 CE2 0.099 REMARK 500 PHE A 244 CG PHE A 244 CD1 0.090 REMARK 500 MET A 266 CB MET A 266 CG 0.332 REMARK 500 MET A 266 CG MET A 266 SD -0.214 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 79 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 TYR A 126 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 213 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 259 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 PHE A 269 CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 MET A 288 CG - SD - CE ANGL. DEV. = -14.3 DEGREES REMARK 500 LEU A 324 CB - CG - CD2 ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP A 326 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -127.57 54.25 REMARK 500 THR A 245 47.19 -90.47 REMARK 500 PHE A 269 99.91 -163.19 REMARK 500 HIS A 301 -130.51 59.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 6 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UDP A 1 O3B REMARK 620 2 UDP A 1 O1A 90.2 REMARK 620 3 ASP A 211 OD2 100.5 96.3 REMARK 620 4 ASP A 213 OD1 158.8 81.7 99.8 REMARK 620 5 ASP A 213 OD2 105.6 81.4 153.8 54.0 REMARK 620 6 HOH A 480 O 90.6 171.5 91.9 94.7 90.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SX3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AABB+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SX5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AABB+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SX7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBA+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SX8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBA+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SXB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBB+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SXC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBBB+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBBB+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SXE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AAAA+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SXG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AAAA+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATIONS G235S, L266M, AND G268A ARE B GROUP TRANSFERASE NATURAL REMARK 999 VARIANTS. DBREF 3SXA A 64 354 UNP P16442 BGAT_HUMAN 64 354 SEQADV 3SXA PHE A 62 UNP P16442 EXPRESSION TAG SEQADV 3SXA MET A 63 UNP P16442 EXPRESSION TAG SEQADV 3SXA SER A 235 UNP P16442 GLY 235 SEE REMARK 999 SEQADV 3SXA MET A 266 UNP P16442 LEU 266 SEE REMARK 999 SEQADV 3SXA ALA A 268 UNP P16442 GLY 268 SEE REMARK 999 SEQRES 1 A 293 PHE MET VAL SER LEU PRO ARG MET VAL TYR PRO GLN PRO SEQRES 2 A 293 LYS VAL LEU THR PRO CYS ARG LYS ASP VAL LEU VAL VAL SEQRES 3 A 293 THR PRO TRP LEU ALA PRO ILE VAL TRP GLU GLY THR PHE SEQRES 4 A 293 ASN ILE ASP ILE LEU ASN GLU GLN PHE ARG LEU GLN ASN SEQRES 5 A 293 THR THR ILE GLY LEU THR VAL PHE ALA ILE LYS LYS TYR SEQRES 6 A 293 VAL ALA PHE LEU LYS LEU PHE LEU GLU THR ALA GLU LYS SEQRES 7 A 293 HIS PHE MET VAL GLY HIS ARG VAL HIS TYR TYR VAL PHE SEQRES 8 A 293 THR ASP GLN PRO ALA ALA VAL PRO ARG VAL THR LEU GLY SEQRES 9 A 293 THR GLY ARG GLN LEU SER VAL LEU GLU VAL ARG ALA TYR SEQRES 10 A 293 LYS ARG TRP GLN ASP VAL SER MET ARG ARG MET GLU MET SEQRES 11 A 293 ILE SER ASP PHE CYS GLU ARG ARG PHE LEU SER GLU VAL SEQRES 12 A 293 ASP TYR LEU VAL CYS VAL ASP VAL ASP MET GLU PHE ARG SEQRES 13 A 293 ASP HIS VAL GLY VAL GLU ILE LEU THR PRO LEU PHE GLY SEQRES 14 A 293 THR LEU HIS PRO SER PHE TYR GLY SER SER ARG GLU ALA SEQRES 15 A 293 PHE THR TYR GLU ARG ARG PRO GLN SER GLN ALA TYR ILE SEQRES 16 A 293 PRO LYS ASP GLU GLY ASP PHE TYR TYR MET GLY ALA PHE SEQRES 17 A 293 PHE GLY GLY SER VAL GLN GLU VAL GLN ARG LEU THR ARG SEQRES 18 A 293 ALA CYS HIS GLN ALA MET MET VAL ASP GLN ALA ASN GLY SEQRES 19 A 293 ILE GLU ALA VAL TRP HIS ASP GLU SER HIS LEU ASN LYS SEQRES 20 A 293 TYR LEU LEU ARG HIS LYS PRO THR LYS VAL LEU SER PRO SEQRES 21 A 293 GLU TYR LEU TRP ASP GLN GLN LEU LEU GLY TRP PRO ALA SEQRES 22 A 293 VAL LEU ARG LYS LEU ARG PHE THR ALA VAL PRO LYS ASN SEQRES 23 A 293 HIS GLN ALA VAL ARG ASN PRO HET UDP A 1 25 HET GAL A 2 12 HET GOL A 3 6 HET MN A 6 1 HET PEG A 7 7 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 GAL C6 H12 O6 FORMUL 4 GOL C3 H8 O3 FORMUL 5 MN MN 2+ FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *238(H2 O) HELIX 1 1 ASN A 101 GLN A 112 1 12 HELIX 2 2 ILE A 123 ALA A 128 5 6 HELIX 3 3 PHE A 129 PHE A 141 1 13 HELIX 4 4 GLN A 155 VAL A 159 5 5 HELIX 5 5 ARG A 180 ARG A 187 1 8 HELIX 6 6 ARG A 187 SER A 193 1 7 HELIX 7 7 CYS A 196 VAL A 204 1 9 HELIX 8 8 GLY A 221 LEU A 225 5 5 HELIX 9 9 SER A 240 PHE A 244 5 5 HELIX 10 10 VAL A 274 ASN A 294 1 21 HELIX 11 11 TRP A 300 HIS A 313 1 14 HELIX 12 12 PRO A 321 LEU A 324 5 4 HELIX 13 13 ASP A 326 GLY A 331 1 6 HELIX 14 14 ASN A 347 ARG A 352 1 6 SHEET 1 A 8 ILE A 94 VAL A 95 0 SHEET 2 A 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 A 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 A 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 A 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 A 8 THR A 115 ALA A 122 1 N GLY A 117 O TYR A 206 SHEET 7 A 8 ARG A 146 THR A 153 1 O TYR A 150 N LEU A 118 SHEET 8 A 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 B 2 MET A 214 PHE A 216 0 SHEET 2 B 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK O3B UDP A 1 MN MN A 6 1555 1555 2.14 LINK O1A UDP A 1 MN MN A 6 1555 1555 2.18 LINK MN MN A 6 OD2 ASP A 211 1555 1555 2.16 LINK MN MN A 6 OD1 ASP A 213 1555 1555 2.22 LINK MN MN A 6 OD2 ASP A 213 1555 1555 2.43 LINK MN MN A 6 O HOH A 480 1555 1555 2.19 CRYST1 52.480 149.740 79.610 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012561 0.00000