HEADER TRANSFERASE 14-JUL-11 3SXE TITLE CRYSTAL STRUCTURE OF AAAA+UDP+GAL WITH GLYCEROL AS THE CRYOPROTECTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HISTO-BLOOD GROUP A TRANSFERASE (UNP RESIDUES 64-354); COMPND 5 SYNONYM: GTA, FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, COMPND 6 FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE, COMPND 7 GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- COMPND 8 ACETYLGALACTOSAMINYLTRANSFERASE, GLYCOPROTEIN-FUCOSYLGALACTOSIDE COMPND 9 ALPHA-GALACTOSYLTRANSFERASE, NAGAT; COMPND 10 EC: 2.4.1.40; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCQ DELTA 1AC KEYWDS RETAINING GLYCOSYLTRANSFERASE, GLYCOPROTEIN, BLOOD GROUP ANTIGEN, ABO KEYWDS 2 ROSSMANN FOLD, METAL-BINDING, MANGANESE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.R.JOHAL,S.V.EVANS REVDAT 5 13-SEP-23 3SXE 1 HETSYN REVDAT 4 29-JUL-20 3SXE 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 07-MAR-18 3SXE 1 REMARK REVDAT 2 28-MAR-12 3SXE 1 JRNL REVDAT 1 29-FEB-12 3SXE 0 JRNL AUTH A.R.JOHAL,B.SCHUMAN,J.A.ALFARO,S.BORISOVA,N.O.SETO,S.V.EVANS JRNL TITL SEQUENCE-DEPENDENT EFFECTS OF CRYOPROTECTANTS ON THE ACTIVE JRNL TITL 2 SITES OF THE HUMAN ABO(H) BLOOD GROUP A AND B JRNL TITL 3 GLYCOSYLTRANSFERASES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 268 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22349229 JRNL DOI 10.1107/S0907444912001801 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 47595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2563 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3496 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.4900 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.4960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2539 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3454 ; 2.256 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 292 ; 6.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.863 ;22.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;13.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.882 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1925 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 1.396 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2392 ; 2.260 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1071 ; 3.383 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 5.089 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : OSMIC BLUE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.4SSI REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 74.744 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.330 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.53 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% PEG4000, 5% MPD, 100 MM AMMONIUM REMARK 280 SULFATE, 70 MM SODIUM CHLORIDE, 50 MM ADA, PH 7.6, 30 MM SODIUM REMARK 280 ACETATE, PH 4.6, 5 MM MNCL2, WITH 30% GLYCEROL AS THE REMARK 280 CRYOPROTECTANT, HANGING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.81500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.81500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.88000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.81500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.88000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.81500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.55000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.88000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 41 O HOH A 551 1.17 REMARK 500 O HOH A 362 O HOH A 554 1.29 REMARK 500 O HOH A 52 O HOH A 552 1.41 REMARK 500 O HOH A 401 O HOH A 523 1.60 REMARK 500 O HOH A 444 O HOH A 490 1.61 REMARK 500 O HOH A 58 O HOH A 556 1.65 REMARK 500 O HOH A 406 O HOH A 540 1.65 REMARK 500 O HOH A 437 O HOH A 540 1.76 REMARK 500 O HOH A 447 O HOH A 461 1.95 REMARK 500 O HOH A 439 O HOH A 453 1.96 REMARK 500 NE ARG A 312 O HOH A 452 1.99 REMARK 500 NH2 ARG A 217 O HOH A 507 2.00 REMARK 500 CB CYS A 80 O HOH A 439 2.06 REMARK 500 O HOH A 452 O HOH A 524 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 461 O HOH A 555 3655 1.91 REMARK 500 OE2 GLU A 242 O HOH A 543 3655 2.03 REMARK 500 O HOH A 447 O HOH A 553 3655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 282 CG ARG A 282 CD 0.174 REMARK 500 TYR A 323 CE1 TYR A 323 CZ 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 154 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PHE A 216 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 259 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU A 266 CB - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 PHE A 269 CB - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 MET A 288 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -128.67 54.62 REMARK 500 GLU A 197 -9.31 -59.19 REMARK 500 ARG A 198 -61.81 -145.85 REMARK 500 THR A 245 50.99 -91.83 REMARK 500 PHE A 269 103.43 -163.21 REMARK 500 HIS A 301 -135.48 59.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 356 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UDP A 1 O3B REMARK 620 2 UDP A 1 O1A 93.3 REMARK 620 3 ASP A 211 OD1 96.7 98.7 REMARK 620 4 ASP A 213 OD1 162.0 83.8 101.3 REMARK 620 5 ASP A 213 OD2 106.6 83.5 156.5 55.5 REMARK 620 6 HOH A 473 O 88.9 169.9 90.8 91.1 86.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SX3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AABB+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SX5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AABB+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SX7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBA+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SX8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBA+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SXA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBB+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SXB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ABBB+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SXC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBBB+UDP+GAL WITH GLYCEROL AS THE REMARK 900 CRYOPROTECTANT REMARK 900 RELATED ID: 3SXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BBBB+UDP+GAL WITH MPD AS THE CRYOPROTECTANT REMARK 900 RELATED ID: 3SXG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AAAA+UDP+GAL WITH MPD AS THE CRYOPROTECTANT DBREF 3SXE A 64 354 UNP P16442 BGAT_HUMAN 64 354 SEQADV 3SXE PHE A 62 UNP P16442 EXPRESSION TAG SEQADV 3SXE MET A 63 UNP P16442 EXPRESSION TAG SEQRES 1 A 293 PHE MET VAL SER LEU PRO ARG MET VAL TYR PRO GLN PRO SEQRES 2 A 293 LYS VAL LEU THR PRO CYS ARG LYS ASP VAL LEU VAL VAL SEQRES 3 A 293 THR PRO TRP LEU ALA PRO ILE VAL TRP GLU GLY THR PHE SEQRES 4 A 293 ASN ILE ASP ILE LEU ASN GLU GLN PHE ARG LEU GLN ASN SEQRES 5 A 293 THR THR ILE GLY LEU THR VAL PHE ALA ILE LYS LYS TYR SEQRES 6 A 293 VAL ALA PHE LEU LYS LEU PHE LEU GLU THR ALA GLU LYS SEQRES 7 A 293 HIS PHE MET VAL GLY HIS ARG VAL HIS TYR TYR VAL PHE SEQRES 8 A 293 THR ASP GLN PRO ALA ALA VAL PRO ARG VAL THR LEU GLY SEQRES 9 A 293 THR GLY ARG GLN LEU SER VAL LEU GLU VAL ARG ALA TYR SEQRES 10 A 293 LYS ARG TRP GLN ASP VAL SER MET ARG ARG MET GLU MET SEQRES 11 A 293 ILE SER ASP PHE CYS GLU ARG ARG PHE LEU SER GLU VAL SEQRES 12 A 293 ASP TYR LEU VAL CYS VAL ASP VAL ASP MET GLU PHE ARG SEQRES 13 A 293 ASP HIS VAL GLY VAL GLU ILE LEU THR PRO LEU PHE GLY SEQRES 14 A 293 THR LEU HIS PRO GLY PHE TYR GLY SER SER ARG GLU ALA SEQRES 15 A 293 PHE THR TYR GLU ARG ARG PRO GLN SER GLN ALA TYR ILE SEQRES 16 A 293 PRO LYS ASP GLU GLY ASP PHE TYR TYR LEU GLY GLY PHE SEQRES 17 A 293 PHE GLY GLY SER VAL GLN GLU VAL GLN ARG LEU THR ARG SEQRES 18 A 293 ALA CYS HIS GLN ALA MET MET VAL ASP GLN ALA ASN GLY SEQRES 19 A 293 ILE GLU ALA VAL TRP HIS ASP GLU SER HIS LEU ASN LYS SEQRES 20 A 293 TYR LEU LEU ARG HIS LYS PRO THR LYS VAL LEU SER PRO SEQRES 21 A 293 GLU TYR LEU TRP ASP GLN GLN LEU LEU GLY TRP PRO ALA SEQRES 22 A 293 VAL LEU ARG LYS LEU ARG PHE THR ALA VAL PRO LYS ASN SEQRES 23 A 293 HIS GLN ALA VAL ARG ASN PRO HET UDP A 1 25 HET GAL A 2 12 HET GAL A 355 12 HET MN A 356 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM MN MANGANESE (II) ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 GAL 2(C6 H12 O6) FORMUL 5 MN MN 2+ FORMUL 6 HOH *278(H2 O) HELIX 1 1 ASN A 101 GLN A 112 1 12 HELIX 2 2 ILE A 123 ALA A 128 5 6 HELIX 3 3 PHE A 129 PHE A 141 1 13 HELIX 4 4 GLN A 155 VAL A 159 5 5 HELIX 5 5 ARG A 180 GLU A 197 1 18 HELIX 6 6 ARG A 198 VAL A 204 1 7 HELIX 7 7 GLY A 221 LEU A 225 5 5 HELIX 8 8 SER A 240 PHE A 244 5 5 HELIX 9 9 VAL A 274 ASN A 294 1 21 HELIX 10 10 TRP A 300 HIS A 313 1 14 HELIX 11 11 PRO A 321 LEU A 324 5 4 HELIX 12 12 ASP A 326 GLY A 331 1 6 HELIX 13 13 ASN A 347 ARG A 352 1 6 SHEET 1 A 8 ILE A 94 VAL A 95 0 SHEET 2 A 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 A 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 A 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 A 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 A 8 THR A 115 ALA A 122 1 N GLY A 117 O TYR A 206 SHEET 7 A 8 ARG A 146 THR A 153 1 O PHE A 152 N ALA A 122 SHEET 8 A 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 B 2 MET A 214 PHE A 216 0 SHEET 2 B 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK O3B UDP A 1 MN MN A 356 1555 1555 2.06 LINK O1A UDP A 1 MN MN A 356 1555 1555 2.17 LINK OD1 ASP A 211 MN MN A 356 1555 1555 2.14 LINK OD1 ASP A 213 MN MN A 356 1555 1555 2.25 LINK OD2 ASP A 213 MN MN A 356 1555 1555 2.38 LINK MN MN A 356 O HOH A 473 1555 1555 2.25 CRYST1 52.550 149.630 79.760 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012538 0.00000