HEADER TRANSCRIPTION REGULATOR 15-JUL-11 3SXK TITLE ZN2+-BOUND FCD DOMAIN OF TM0439, A PUTATIVE TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 75-211; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM_0439; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION, METAL-BINDING, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER FOR KEYWDS 3 STRUCTURE AND FUNCTION INNOVATION, ISFI, FADR-C, FADR, GNTR, KEYWDS 4 TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION REPRESSOR, ZINC-BINDING, KEYWDS 5 NICKEL-BINDING, DNA-BINDING, SURFACE ENTROPY REDUCTION, KEYWDS 6 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR G.P.CZELAKOWSKI,Z.S.DEREWENDA,INTEGRATED CENTER FOR STRUCTURE AND AUTHOR 2 FUNCTION INNOVATION (ISFI) REVDAT 3 13-SEP-23 3SXK 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3SXK 1 REMARK REVDAT 1 16-NOV-11 3SXK 0 JRNL AUTH G.P.CZELAKOWSKI,Z.S.DEREWENDA JRNL TITL ZN2+-BOUND FCD DOMAIN OF TM0439, A PUTATIVE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ZHENG,D.R.COOPER,N.E.GROSSOEHME,M.YU,L.W.HUNG,M.CIESLIK, REMARK 1 AUTH 2 U.DEREWENDA,S.A.LESLEY,I.A.WILSON,D.P.GIEDROC,Z.S.DEREWENDA REMARK 1 TITL STRUCTURE OF THERMOTOGA MARITIMA TM0439: IMPLICATIONS FOR REMARK 1 TITL 2 THE MECHANISM OF BACTERIAL GNTR TRANSCRIPTION REGULATORS REMARK 1 TITL 3 WITH ZN2+-BINDING FCD DOMAINS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 356 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19307717 REMARK 1 DOI 10.1107/S0907444909004727 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_817 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 38057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9336 - 3.1175 0.99 5606 159 0.1745 0.1760 REMARK 3 2 3.1175 - 2.4746 1.00 5543 159 0.1655 0.2010 REMARK 3 3 2.4746 - 2.1618 0.99 5538 133 0.1518 0.1727 REMARK 3 4 2.1618 - 1.9642 0.99 5461 164 0.1581 0.2015 REMARK 3 5 1.9642 - 1.8234 0.99 5449 127 0.1656 0.2009 REMARK 3 6 1.8234 - 1.7159 0.97 5433 161 0.2025 0.2332 REMARK 3 7 1.7159 - 1.6299 0.73 4010 114 0.2336 0.3006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 51.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.55560 REMARK 3 B22 (A**2) : -7.61760 REMARK 3 B33 (A**2) : 6.11020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.96510 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.029 2408 REMARK 3 ANGLE : 1.762 3240 REMARK 3 CHIRALITY : 0.093 352 REMARK 3 PLANARITY : 0.007 417 REMARK 3 DIHEDRAL : 13.327 932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 72:118 OR RESSEQ REMARK 3 121:211 ) AND (NOT ELEMENT H) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 72:118 OR RESSEQ REMARK 3 121:211 ) AND (NOT ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 1103 REMARK 3 RMSD : 0.336 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CURVED REMARK 200 CRYSTAL REMARK 200 OPTICS : MIRRORS RH/PT COATED REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38096 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB: 3FMS, CHAIN A: 72-211 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.0, 100 MM NACL, 200 MM REMARK 280 (NH4)2SO4, 100 MM BISTRIS PH 5.5, 25% PEG 3350, 0.1 MM ZNCL2, 2 REMARK 280 MM DTT , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.98850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 119 REMARK 465 SER B 120 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 124 CG OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 109 O HOH A 281 2.06 REMARK 500 OD1 ASP A 127 O HOH A 268 2.14 REMARK 500 O HOH A 220 O HOH A 276 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 276 O HOH B 242 2555 1.99 REMARK 500 O HOH A 276 O HOH B 273 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 122 CB - CA - C ANGL. DEV. = -19.3 DEGREES REMARK 500 ASP B 128 CA - C - N ANGL. DEV. = -19.1 DEGREES REMARK 500 ASP B 128 O - C - N ANGL. DEV. = 21.2 DEGREES REMARK 500 SER B 129 C - N - CA ANGL. DEV. = -20.6 DEGREES REMARK 500 ASP B 158 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 1 O3 REMARK 620 2 ASP A 130 OD1 73.4 REMARK 620 3 HIS A 134 NE2 121.1 84.8 REMARK 620 4 HIS A 174 NE2 115.1 81.9 114.8 REMARK 620 5 HIS A 196 NE2 96.6 166.3 108.6 94.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 6 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 162 NE2 REMARK 620 2 HOH A 220 O 92.7 REMARK 620 3 HOH A 268 O 109.1 98.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 B 2 O3 REMARK 620 2 HIS B 134 NE2 121.1 REMARK 620 3 HIS B 174 NE2 114.5 114.6 REMARK 620 4 HIS B 196 NE2 96.4 110.2 94.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 5 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 162 NE2 REMARK 620 2 HOH B 242 O 89.0 REMARK 620 3 HOH B 271 O 92.9 87.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT B 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMS RELATED DB: PDB REMARK 900 FULL-LENGTH NI2+-BOUND STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: 3SXY RELATED DB: PDB REMARK 900 FULL-LENGTH METAL-FREE STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: 3SXM RELATED DB: PDB REMARK 900 METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REMARK 900 REGULATOR (SER MUTATION E118A, K119A, K122A) REMARK 900 RELATED ID: 3SXZ RELATED DB: PDB REMARK 900 RELATED ID: ISFI335 RELATED DB: TARGETDB DBREF 3SXK A 75 211 UNP Q9WYS0 Q9WYS0_THEMA 75 211 DBREF 3SXK B 75 211 UNP Q9WYS0 Q9WYS0_THEMA 75 211 SEQADV 3SXK GLY A 72 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXK ALA A 73 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXK MET A 74 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXK ALA A 118 UNP Q9WYS0 GLU 118 ENGINEERED MUTATION SEQADV 3SXK ALA A 119 UNP Q9WYS0 LYS 119 ENGINEERED MUTATION SEQADV 3SXK ALA A 122 UNP Q9WYS0 LYS 122 ENGINEERED MUTATION SEQADV 3SXK GLY B 72 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXK ALA B 73 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXK MET B 74 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXK ALA B 118 UNP Q9WYS0 GLU 118 ENGINEERED MUTATION SEQADV 3SXK ALA B 119 UNP Q9WYS0 LYS 119 ENGINEERED MUTATION SEQADV 3SXK ALA B 122 UNP Q9WYS0 LYS 122 ENGINEERED MUTATION SEQRES 1 A 140 GLY ALA MET ASP GLU LYS PHE ILE ARG GLU THR ILE GLU SEQRES 2 A 140 THR ARG ILE MET MET GLU VAL PHE CYS LEU GLU ASN TYR SEQRES 3 A 140 PHE ASP LYS ILE ALA GLY SER GLU GLU LEU LEU GLU ILE SEQRES 4 A 140 LYS GLY GLU ILE ASP ASP VAL ALA ALA SER ALA ALA ARG SEQRES 5 A 140 GLU ILE PHE ASP ASP SER ASP GLU ARG LEU HIS LYS LEU SEQRES 6 A 140 PHE ILE ARG ALA SER GLY ASN GLU LEU ILE ILE SER LEU SEQRES 7 A 140 TYR GLU LYS ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS SEQRES 8 A 140 LEU ASN GLU ARG TYR VAL VAL SER ASN ARG GLU HIS LYS SEQRES 9 A 140 GLU LEU ILE GLU ARG ILE ILE SER GLY ASP LYS GLU GLY SEQRES 10 A 140 ALA ILE GLU LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU SEQRES 11 A 140 ALA GLU THR ILE LYS ASN LEU TYR THR TYR SEQRES 1 B 140 GLY ALA MET ASP GLU LYS PHE ILE ARG GLU THR ILE GLU SEQRES 2 B 140 THR ARG ILE MET MET GLU VAL PHE CYS LEU GLU ASN TYR SEQRES 3 B 140 PHE ASP LYS ILE ALA GLY SER GLU GLU LEU LEU GLU ILE SEQRES 4 B 140 LYS GLY GLU ILE ASP ASP VAL ALA ALA SER ALA ALA ARG SEQRES 5 B 140 GLU ILE PHE ASP ASP SER ASP GLU ARG LEU HIS LYS LEU SEQRES 6 B 140 PHE ILE ARG ALA SER GLY ASN GLU LEU ILE ILE SER LEU SEQRES 7 B 140 TYR GLU LYS ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS SEQRES 8 B 140 LEU ASN GLU ARG TYR VAL VAL SER ASN ARG GLU HIS LYS SEQRES 9 B 140 GLU LEU ILE GLU ARG ILE ILE SER GLY ASP LYS GLU GLY SEQRES 10 B 140 ALA ILE GLU LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU SEQRES 11 B 140 ALA GLU THR ILE LYS ASN LEU TYR THR TYR HET SO4 A 1 5 HET ZN A 4 1 HET ZN A 6 1 HET BCT A 212 5 HET SO4 B 2 5 HET ZN B 3 1 HET ZN B 5 1 HET BCT B 212 5 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM BCT BICARBONATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 ZN 4(ZN 2+) FORMUL 6 BCT 2(C H O3 1-) FORMUL 11 HOH *288(H2 O) HELIX 1 1 ASP A 75 TYR A 97 1 23 HELIX 2 2 TYR A 97 GLY A 103 1 7 HELIX 3 3 SER A 104 ASP A 116 1 13 HELIX 4 4 ALA A 118 SER A 120 5 3 HELIX 5 5 ALA A 121 ALA A 140 1 20 HELIX 6 6 ASN A 143 LEU A 163 1 21 HELIX 7 7 ARG A 166 SER A 183 1 18 HELIX 8 8 ASP A 185 ASN A 207 1 23 HELIX 9 9 ASP B 75 TYR B 97 1 23 HELIX 10 10 TYR B 97 GLY B 103 1 7 HELIX 11 11 SER B 104 ASP B 116 1 13 HELIX 12 12 ILE B 125 ALA B 140 1 16 HELIX 13 13 ASN B 143 LEU B 163 1 21 HELIX 14 14 ARG B 166 SER B 183 1 18 HELIX 15 15 ASP B 185 ASN B 207 1 23 LINK O3 SO4 A 1 ZN ZN A 4 1555 1555 2.06 LINK ZN ZN A 4 OD1 ASP A 130 1555 1555 2.66 LINK ZN ZN A 4 NE2 HIS A 134 1555 1555 2.06 LINK ZN ZN A 4 NE2 HIS A 174 1555 1555 2.02 LINK ZN ZN A 4 NE2 HIS A 196 1555 1555 2.12 LINK ZN ZN A 6 NE2 HIS A 162 1555 1555 2.01 LINK ZN ZN A 6 O HOH A 220 1555 1555 2.35 LINK ZN ZN A 6 O HOH A 268 1555 1555 2.20 LINK O3 SO4 B 2 ZN ZN B 3 1555 1555 2.12 LINK ZN ZN B 3 NE2 HIS B 134 1555 1555 2.04 LINK ZN ZN B 3 NE2 HIS B 174 1555 1555 2.06 LINK ZN ZN B 3 NE2 HIS B 196 1555 1555 2.11 LINK ZN ZN B 5 NE2 HIS B 162 1555 1555 2.23 LINK ZN ZN B 5 O HOH B 242 1555 1555 2.33 LINK ZN ZN B 5 O HOH B 271 1555 1555 2.07 SITE 1 AC1 9 ZN A 4 HOH A 19 ARG A 86 ASP A 130 SITE 2 AC1 9 HIS A 134 ARG A 161 HIS A 174 HIS A 196 SITE 3 AC1 9 VAL A 200 SITE 1 AC2 5 SO4 A 1 ASP A 130 HIS A 134 HIS A 174 SITE 2 AC2 5 HIS A 196 SITE 1 AC3 4 ASP A 127 HIS A 162 HOH A 220 HOH A 268 SITE 1 AC4 3 SER A 104 GLU A 105 GLU A 106 SITE 1 AC5 9 ZN B 3 HOH B 13 ARG B 86 ASP B 130 SITE 2 AC5 9 HIS B 134 ARG B 161 HIS B 174 HIS B 196 SITE 3 AC5 9 VAL B 200 SITE 1 AC6 5 SO4 B 2 ASP B 130 HIS B 134 HIS B 174 SITE 2 AC6 5 HIS B 196 SITE 1 AC7 4 ASP B 127 HIS B 162 HOH B 242 HOH B 271 SITE 1 AC8 2 GLU B 105 GLU B 106 CRYST1 45.697 79.977 49.223 90.00 115.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021883 0.000000 0.010241 0.00000 SCALE2 0.000000 0.012504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022430 0.00000 MTRIX1 1 -0.536423 0.006519 0.843924 0.09732 1 MTRIX2 1 0.001839 -0.999959 0.008893 -3.49212 1 MTRIX3 1 0.843947 0.006323 0.536389 0.00546 1