HEADER TRANSCRIPTION REGULATOR 15-JUL-11 3SXM TITLE METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 75-211; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM_0439; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION, METAL-BINDING, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER FOR KEYWDS 3 STRUCTURE AND FUNCTION INNOVATION, ISFI, FADR-C, FADR, GNTR, KEYWDS 4 TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION REPRESSOR, ZINC-BINDING, KEYWDS 5 NICKEL-BINDING, DNA-BINDING, SURFACE ENTROPY REDUCTION, KEYWDS 6 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR G.P.CZELAKOWSKI,Z.S.DEREWENDA,INTEGRATED CENTER FOR STRUCTURE AND AUTHOR 2 FUNCTION INNOVATION (ISFI) REVDAT 3 13-SEP-23 3SXM 1 REMARK SEQADV REVDAT 2 08-NOV-17 3SXM 1 REMARK REVDAT 1 16-NOV-11 3SXM 0 JRNL AUTH G.P.CZELAKOWSKI,Z.S.DEREWENDA JRNL TITL METAL-FREE FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ZHENG,D.R.COOPER,N.E.GROSSOEHME,M.YU,L.W.HUNG,M.CIESLIK, REMARK 1 AUTH 2 U.DEREWENDA,S.A.LESLEY,I.A.WILSON,D.P.GIEDROC,Z.S.DEREWENDA REMARK 1 TITL STRUCTURE OF THERMOTOGA MARITIMA TM0439: IMPLICATIONS FOR REMARK 1 TITL 2 THE MECHANISM OF BACTERIAL GNTR TRANSCRIPTION REGULATORS REMARK 1 TITL 3 WITH ZN2+-BINDING FCD DOMAINS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 65 356 2009 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 19307717 REMARK 1 DOI 10.1107/S0907444909004727 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_817 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 46041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.140 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6056 - 2.9645 1.00 6578 159 0.1735 0.1809 REMARK 3 2 2.9645 - 2.3531 1.00 6510 156 0.1583 0.2078 REMARK 3 3 2.3531 - 2.0556 1.00 6512 140 0.1532 0.1713 REMARK 3 4 2.0556 - 1.8677 1.00 6526 121 0.1560 0.1580 REMARK 3 5 1.8677 - 1.7338 1.00 6461 150 0.1752 0.2141 REMARK 3 6 1.7338 - 1.6316 1.00 6490 136 0.2046 0.2385 REMARK 3 7 1.6316 - 1.5499 0.92 5981 121 0.2364 0.2885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 49.52 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10590 REMARK 3 B22 (A**2) : -5.39930 REMARK 3 B33 (A**2) : 3.29340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.00440 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2396 REMARK 3 ANGLE : 1.645 3217 REMARK 3 CHIRALITY : 0.100 351 REMARK 3 PLANARITY : 0.008 421 REMARK 3 DIHEDRAL : 12.906 939 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 72:114) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0268 7.1933 8.6959 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.0693 REMARK 3 T33: 0.0348 T12: -0.0117 REMARK 3 T13: -0.0204 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 4.7747 L22: 1.9912 REMARK 3 L33: 1.4667 L12: -0.3005 REMARK 3 L13: -0.1205 L23: -0.1480 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0374 S13: 0.0173 REMARK 3 S21: 0.0572 S22: 0.0255 S23: -0.0712 REMARK 3 S31: -0.1137 S32: 0.0461 S33: -0.0482 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 115:125) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2004 24.7214 2.1591 REMARK 3 T TENSOR REMARK 3 T11: 0.5774 T22: 0.3838 REMARK 3 T33: 0.5403 T12: -0.1223 REMARK 3 T13: 0.0134 T23: 0.1687 REMARK 3 L TENSOR REMARK 3 L11: 5.4958 L22: 5.2165 REMARK 3 L33: 3.2028 L12: -4.0565 REMARK 3 L13: -0.7662 L23: -2.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 0.9543 S13: 1.4433 REMARK 3 S21: -0.5159 S22: 0.0535 S23: -0.0201 REMARK 3 S31: -0.7973 S32: 0.1775 S33: -0.1713 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 126:185) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0721 11.8275 5.5262 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.1057 REMARK 3 T33: 0.1137 T12: -0.0166 REMARK 3 T13: 0.0071 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.9502 L22: 1.6208 REMARK 3 L33: 1.1538 L12: -0.2537 REMARK 3 L13: 0.4850 L23: -0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: 0.0502 S13: 0.2137 REMARK 3 S21: -0.0621 S22: 0.0471 S23: -0.0841 REMARK 3 S31: -0.2291 S32: 0.0481 S33: 0.0460 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 186:211) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5271 15.5586 15.3127 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.1477 REMARK 3 T33: 0.1289 T12: 0.0075 REMARK 3 T13: -0.0178 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 3.7659 L22: 3.2883 REMARK 3 L33: 2.4042 L12: -2.9842 REMARK 3 L13: 2.3478 L23: -1.9211 REMARK 3 S TENSOR REMARK 3 S11: -0.3294 S12: -0.3422 S13: 0.4214 REMARK 3 S21: 0.3909 S22: 0.2365 S23: 0.0988 REMARK 3 S31: -0.4252 S32: -0.2834 S33: 0.1354 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 72:115) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6192 -11.1168 13.8685 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0961 REMARK 3 T33: 0.1403 T12: 0.0187 REMARK 3 T13: -0.0182 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.2922 L22: 2.4505 REMARK 3 L33: 3.1819 L12: -0.2004 REMARK 3 L13: -0.5028 L23: 0.3113 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0807 S13: -0.1664 REMARK 3 S21: 0.1726 S22: 0.0922 S23: 0.1863 REMARK 3 S31: 0.0277 S32: -0.1759 S33: -0.0466 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 116:121) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7132 -29.8090 20.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.8009 T22: 0.3827 REMARK 3 T33: 0.7170 T12: -0.2630 REMARK 3 T13: -0.0996 T23: 0.1858 REMARK 3 L TENSOR REMARK 3 L11: 1.0336 L22: 0.0891 REMARK 3 L33: 0.3317 L12: 0.2799 REMARK 3 L13: -0.0781 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.1433 S12: 0.1610 S13: 0.4379 REMARK 3 S21: 0.1440 S22: 0.1402 S23: 1.1778 REMARK 3 S31: -0.2758 S32: -0.0536 S33: -0.3171 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 122:185) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9220 -15.4100 12.9916 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.1327 REMARK 3 T33: 0.1839 T12: -0.0187 REMARK 3 T13: 0.0162 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.6023 L22: 1.3468 REMARK 3 L33: 2.1037 L12: -0.3295 REMARK 3 L13: -0.2063 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: -0.0463 S13: -0.1736 REMARK 3 S21: 0.1303 S22: 0.1121 S23: 0.2838 REMARK 3 S31: 0.2334 S32: -0.1605 S33: -0.0540 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 186:211) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0472 -18.7888 12.9026 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1330 REMARK 3 T33: 0.1917 T12: 0.0286 REMARK 3 T13: -0.0286 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.8431 L22: 5.0351 REMARK 3 L33: 8.9976 L12: -1.7856 REMARK 3 L13: -3.0599 L23: 5.5058 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0579 S13: -0.0977 REMARK 3 S21: 0.3294 S22: 0.2441 S23: -0.3957 REMARK 3 S31: 0.4822 S32: 0.1885 S33: -0.2211 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 72:117 OR RESSEQ REMARK 3 121:211 ) AND (NOT ELEMENT H) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 72:117 OR RESSEQ REMARK 3 121:211 ) AND (NOT ELEMENT H) REMARK 3 ATOM PAIRS NUMBER : 1089 REMARK 3 RMSD : 0.364 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CURVED REMARK 200 CRYSTAL REMARK 200 OPTICS : MIRRORS RH/PT COATED REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB: 3FMS, CHAIN A: 72-111 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 8.0, 100 MM NACL, 200 MM REMARK 280 (NH4)2SO4, 100 MM BISTRIS PH 5.5, 25% PEG 3350, 10 MM EDTA, 2 MM REMARK 280 DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.77900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 118 REMARK 465 ALA A 119 REMARK 465 SER A 120 REMARK 465 ALA B 118 REMARK 465 ALA B 119 REMARK 465 SER B 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 116 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 ARG B 166 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 172 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 172 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 127 -71.55 -38.42 REMARK 500 ARG B 166 45.98 -145.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FMS RELATED DB: PDB REMARK 900 FULL-LENGTH NI2+-BOUND STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: 3SXK RELATED DB: PDB REMARK 900 ZN2+-BOUND FCD DOMAIN OF TM0439 A PUTATIVE TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: 3SXY RELATED DB: PDB REMARK 900 FULL-LENGTH METAL-FREE STRUCTURE OF TM0439, A FCD FAMILY REMARK 900 TRANSCRIPTIONAL REGULATOR REMARK 900 RELATED ID: 3SXZ RELATED DB: PDB REMARK 900 RELATED ID: ISFI335 RELATED DB: TARGETDB DBREF 3SXM A 75 211 UNP Q9WYS0 Q9WYS0_THEMA 75 211 DBREF 3SXM B 75 211 UNP Q9WYS0 Q9WYS0_THEMA 75 211 SEQADV 3SXM GLY A 72 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXM ALA A 73 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXM MET A 74 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXM ALA A 118 UNP Q9WYS0 GLU 118 ENGINEERED MUTATION SEQADV 3SXM ALA A 119 UNP Q9WYS0 LYS 119 ENGINEERED MUTATION SEQADV 3SXM ALA A 122 UNP Q9WYS0 LYS 122 ENGINEERED MUTATION SEQADV 3SXM GLY B 72 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXM ALA B 73 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXM MET B 74 UNP Q9WYS0 EXPRESSION TAG SEQADV 3SXM ALA B 118 UNP Q9WYS0 GLU 118 ENGINEERED MUTATION SEQADV 3SXM ALA B 119 UNP Q9WYS0 LYS 119 ENGINEERED MUTATION SEQADV 3SXM ALA B 122 UNP Q9WYS0 LYS 122 ENGINEERED MUTATION SEQRES 1 A 140 GLY ALA MET ASP GLU LYS PHE ILE ARG GLU THR ILE GLU SEQRES 2 A 140 THR ARG ILE MET MET GLU VAL PHE CYS LEU GLU ASN TYR SEQRES 3 A 140 PHE ASP LYS ILE ALA GLY SER GLU GLU LEU LEU GLU ILE SEQRES 4 A 140 LYS GLY GLU ILE ASP ASP VAL ALA ALA SER ALA ALA ARG SEQRES 5 A 140 GLU ILE PHE ASP ASP SER ASP GLU ARG LEU HIS LYS LEU SEQRES 6 A 140 PHE ILE ARG ALA SER GLY ASN GLU LEU ILE ILE SER LEU SEQRES 7 A 140 TYR GLU LYS ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS SEQRES 8 A 140 LEU ASN GLU ARG TYR VAL VAL SER ASN ARG GLU HIS LYS SEQRES 9 A 140 GLU LEU ILE GLU ARG ILE ILE SER GLY ASP LYS GLU GLY SEQRES 10 A 140 ALA ILE GLU LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU SEQRES 11 A 140 ALA GLU THR ILE LYS ASN LEU TYR THR TYR SEQRES 1 B 140 GLY ALA MET ASP GLU LYS PHE ILE ARG GLU THR ILE GLU SEQRES 2 B 140 THR ARG ILE MET MET GLU VAL PHE CYS LEU GLU ASN TYR SEQRES 3 B 140 PHE ASP LYS ILE ALA GLY SER GLU GLU LEU LEU GLU ILE SEQRES 4 B 140 LYS GLY GLU ILE ASP ASP VAL ALA ALA SER ALA ALA ARG SEQRES 5 B 140 GLU ILE PHE ASP ASP SER ASP GLU ARG LEU HIS LYS LEU SEQRES 6 B 140 PHE ILE ARG ALA SER GLY ASN GLU LEU ILE ILE SER LEU SEQRES 7 B 140 TYR GLU LYS ILE TRP ASP ARG ILE ASP LEU VAL ARG HIS SEQRES 8 B 140 LEU ASN GLU ARG TYR VAL VAL SER ASN ARG GLU HIS LYS SEQRES 9 B 140 GLU LEU ILE GLU ARG ILE ILE SER GLY ASP LYS GLU GLY SEQRES 10 B 140 ALA ILE GLU LYS LEU LYS GLU HIS LEU LYS ASN VAL GLU SEQRES 11 B 140 ALA GLU THR ILE LYS ASN LEU TYR THR TYR HET BCT A 1 5 HET BCT B 2 5 HETNAM BCT BICARBONATE ION FORMUL 3 BCT 2(C H O3 1-) FORMUL 5 HOH *312(H2 O) HELIX 1 1 ASP A 75 TYR A 97 1 23 HELIX 2 2 TYR A 97 GLY A 103 1 7 HELIX 3 3 SER A 104 ASP A 116 1 13 HELIX 4 4 ALA A 121 ALA A 140 1 20 HELIX 5 5 ASN A 143 HIS A 162 1 20 HELIX 6 6 ARG A 166 SER A 183 1 18 HELIX 7 7 ASP A 185 ASN A 207 1 23 HELIX 8 8 ASP B 75 TYR B 97 1 23 HELIX 9 9 TYR B 97 GLY B 103 1 7 HELIX 10 10 SER B 104 ASP B 116 1 13 HELIX 11 11 ALA B 121 SER B 141 1 21 HELIX 12 12 ASN B 143 LEU B 163 1 21 HELIX 13 13 ARG B 166 SER B 183 1 18 HELIX 14 14 ASP B 185 ASN B 207 1 23 SITE 1 AC1 3 SER A 104 GLU A 105 GLU A 106 SITE 1 AC2 4 SER B 104 GLU B 105 GLU B 106 ARG B 139 CRYST1 45.471 79.558 49.379 90.00 113.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021992 0.000000 0.009719 0.00000 SCALE2 0.000000 0.012569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022141 0.00000 MTRIX1 1 -0.526052 0.004396 0.850441 -0.03265 1 MTRIX2 1 0.001735 -0.999979 0.006242 -3.36195 1 MTRIX3 1 0.850451 0.004759 0.526033 0.04567 1