HEADER CHAPERONE 18-JUL-11 3SYL TITLE CRYSTAL STRUCTURE OF THE AAA+ PROTEIN CBBX, NATIVE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CBBX; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 STRAIN: KD131 / KCTC 12085; SOURCE 5 GENE: CBBX, RSKD131_2679; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS PHOTOSYNTHESIS, RUBISCO ACTIVASE, AAA+ PROTEIN, CALVIN CYCLE, KEYWDS 2 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR O.MUELLER-CAJAR,M.STOTZ,P.WENDLER,F.U.HARTL,A.BRACHER,M.HAYER-HARTL REVDAT 6 13-SEP-23 3SYL 1 REMARK REVDAT 5 20-NOV-19 3SYL 1 REMARK SEQADV REVDAT 4 08-NOV-17 3SYL 1 REMARK REVDAT 3 30-JUL-14 3SYL 1 REMARK REVDAT 2 23-NOV-11 3SYL 1 JRNL REVDAT 1 09-NOV-11 3SYL 0 JRNL AUTH O.MUELLER-CAJAR,M.STOTZ,P.WENDLER,F.U.HARTL,A.BRACHER, JRNL AUTH 2 M.HAYER-HARTL JRNL TITL STRUCTURE AND FUNCTION OF THE AAA+ PROTEIN CBBX, A RED-TYPE JRNL TITL 2 RUBISCO ACTIVASE. JRNL REF NATURE V. 479 194 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 22048315 JRNL DOI 10.1038/NATURE10568 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 14233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 777 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.00000 REMARK 3 B22 (A**2) : 2.46000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.488 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.378 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.439 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.843 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4393 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5962 ; 1.084 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 5.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;35.826 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;19.800 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;19.056 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3333 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2112 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2984 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2900 ; 0.389 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4488 ; 0.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1627 ; 0.725 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1474 ; 1.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.894 REMARK 200 RESOLUTION RANGE LOW (A) : 46.098 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : 0.45300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NONE REMARK 200 STARTING MODEL: PDB ENTRY 3SYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M (NH4)2SO4, 0.05 M MES-NAOH PH REMARK 280 6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.06400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.05100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.57050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.05100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.06400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.57050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ANALYSIS OF THE CBBX PROTEIN IN SOLUTION AND EM STUDIES REMARK 300 SUGGEST THAT THE BIOLOGICALLY ACTIVE OLIGOMER IS A HEXAMER, BUT IT REMARK 300 CANNOT BE GENERATED BY THE APPLICATION OF SYMMETRY OPERATORS TO THE REMARK 300 CHAINS IN THE COORDINATE FILE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -38.06400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 139.71150 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.10200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 147 REMARK 465 GLU A 148 REMARK 465 ARG A 149 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 GLY A 272 REMARK 465 LEU A 297 REMARK 465 ASP A 298 REMARK 465 SER A 299 REMARK 465 GLU A 300 REMARK 465 ARG A 301 REMARK 465 ARG A 302 REMARK 465 ALA A 303 REMARK 465 ALA A 304 REMARK 465 GLU A 305 REMARK 465 ALA A 306 REMARK 465 LEU A 307 REMARK 465 ALA A 308 REMARK 465 ARG A 309 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 62 REMARK 465 HIS B 63 REMARK 465 GLU B 64 REMARK 465 LEU B 297 REMARK 465 ASP B 298 REMARK 465 SER B 299 REMARK 465 GLU B 300 REMARK 465 ARG B 301 REMARK 465 ARG B 302 REMARK 465 ALA B 303 REMARK 465 ALA B 304 REMARK 465 GLU B 305 REMARK 465 ALA B 306 REMARK 465 LEU B 307 REMARK 465 ALA B 308 REMARK 465 ARG B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 6 OG1 CG2 REMARK 470 SER A 10 OG REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 34 CG1 CG2 CD1 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 TYR A 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 115 CG1 CG2 CD1 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 SER B 10 OG REMARK 470 SER B 20 OG REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ILE B 34 CG1 CG2 CD1 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 THR B 65 OG1 CG2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 113 CG CD OE1 NE2 REMARK 470 TYR B 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 115 CG1 CG2 CD1 REMARK 470 HIS B 117 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 146 CG OD1 OD2 REMARK 470 ASN B 147 CG OD1 ND2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 150 CG OD1 OD2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 ASN B 165 CG OD1 ND2 REMARK 470 ASN B 166 CG OD1 ND2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 SER B 270 OG REMARK 470 SER B 271 OG REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 291 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 206 NH1 ARG A 240 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 36 55.74 -142.02 REMARK 500 LEU A 68 23.63 -145.68 REMARK 500 ASN A 165 -77.12 -65.94 REMARK 500 ALA A 246 51.31 -113.04 REMARK 500 ASN A 247 -117.65 26.04 REMARK 500 THR B 9 -50.44 -136.98 REMARK 500 PRO B 66 -146.88 -84.65 REMARK 500 THR B 67 106.32 -162.65 REMARK 500 HIS B 117 39.60 -93.95 REMARK 500 ARG B 144 77.29 -119.76 REMARK 500 ASN B 165 -80.29 -72.17 REMARK 500 ASP B 168 3.46 -60.47 REMARK 500 LEU B 170 138.36 -174.72 REMARK 500 ASN B 247 -118.32 50.13 REMARK 500 ALA B 269 -71.95 -60.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3SYK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AAA+ PROTEIN CBBX, SELENOMETHIONINE REMARK 900 STRUCTURE REMARK 900 RELATED ID: 3ZUH RELATED DB: PDB REMARK 900 CBBX HEXAMER STRUCTURE REMARK 900 RELATED ID: EMD-1932 RELATED DB: EMDB REMARK 900 NEGATIVE STAIN-EM MAP OF CBBX HEXAMER DBREF 3SYL A 1 309 UNP P95648 CBBX_RHOSH 1 309 DBREF 3SYL B 1 309 UNP P95648 CBBX_RHOSH 1 309 SEQADV 3SYL ILE A 282 UNP P95648 MET 282 ENGINEERED MUTATION SEQADV 3SYL ILE B 282 UNP P95648 MET 282 ENGINEERED MUTATION SEQRES 1 A 309 MET THR ASP ALA ALA THR ALA PRO THR SER ILE ASP LEU SEQRES 2 A 309 ARG ALA GLU TYR GLU GLY SER GLY ALA LYS GLU VAL LEU SEQRES 3 A 309 GLU GLU LEU ASP ARG GLU LEU ILE GLY LEU LYS PRO VAL SEQRES 4 A 309 LYS ASP ARG ILE ARG GLU THR ALA ALA LEU LEU LEU VAL SEQRES 5 A 309 GLU ARG ALA ARG GLN LYS LEU GLY LEU ALA HIS GLU THR SEQRES 6 A 309 PRO THR LEU HIS MET SER PHE THR GLY ASN PRO GLY THR SEQRES 7 A 309 GLY LYS THR THR VAL ALA LEU LYS MET ALA GLY LEU LEU SEQRES 8 A 309 HIS ARG LEU GLY TYR VAL ARG LYS GLY HIS LEU VAL SER SEQRES 9 A 309 VAL THR ARG ASP ASP LEU VAL GLY GLN TYR ILE GLY HIS SEQRES 10 A 309 THR ALA PRO LYS THR LYS GLU VAL LEU LYS ARG ALA MET SEQRES 11 A 309 GLY GLY VAL LEU PHE ILE ASP GLU ALA TYR TYR LEU TYR SEQRES 12 A 309 ARG PRO ASP ASN GLU ARG ASP TYR GLY GLN GLU ALA ILE SEQRES 13 A 309 GLU ILE LEU LEU GLN VAL MET GLU ASN ASN ARG ASP ASP SEQRES 14 A 309 LEU VAL VAL ILE LEU ALA GLY TYR ALA ASP ARG MET GLU SEQRES 15 A 309 ASN PHE PHE GLN SER ASN PRO GLY PHE ARG SER ARG ILE SEQRES 16 A 309 ALA HIS HIS ILE GLU PHE PRO ASP TYR SER ASP GLU GLU SEQRES 17 A 309 LEU PHE GLU ILE ALA GLY HIS MET LEU ASP ASP GLN ASN SEQRES 18 A 309 TYR GLN MET THR PRO GLU ALA GLU THR ALA LEU ARG ALA SEQRES 19 A 309 TYR ILE GLY LEU ARG ARG ASN GLN PRO HIS PHE ALA ASN SEQRES 20 A 309 ALA ARG SER ILE ARG ASN ALA LEU ASP ARG ALA ARG LEU SEQRES 21 A 309 ARG GLN ALA ASN ARG LEU PHE THR ALA SER SER GLY PRO SEQRES 22 A 309 LEU ASP ALA ARG ALA LEU SER THR ILE ALA GLU GLU ASP SEQRES 23 A 309 ILE ARG ALA SER ARG VAL PHE LYS GLY GLY LEU ASP SER SEQRES 24 A 309 GLU ARG ARG ALA ALA GLU ALA LEU ALA ARG SEQRES 1 B 309 MET THR ASP ALA ALA THR ALA PRO THR SER ILE ASP LEU SEQRES 2 B 309 ARG ALA GLU TYR GLU GLY SER GLY ALA LYS GLU VAL LEU SEQRES 3 B 309 GLU GLU LEU ASP ARG GLU LEU ILE GLY LEU LYS PRO VAL SEQRES 4 B 309 LYS ASP ARG ILE ARG GLU THR ALA ALA LEU LEU LEU VAL SEQRES 5 B 309 GLU ARG ALA ARG GLN LYS LEU GLY LEU ALA HIS GLU THR SEQRES 6 B 309 PRO THR LEU HIS MET SER PHE THR GLY ASN PRO GLY THR SEQRES 7 B 309 GLY LYS THR THR VAL ALA LEU LYS MET ALA GLY LEU LEU SEQRES 8 B 309 HIS ARG LEU GLY TYR VAL ARG LYS GLY HIS LEU VAL SER SEQRES 9 B 309 VAL THR ARG ASP ASP LEU VAL GLY GLN TYR ILE GLY HIS SEQRES 10 B 309 THR ALA PRO LYS THR LYS GLU VAL LEU LYS ARG ALA MET SEQRES 11 B 309 GLY GLY VAL LEU PHE ILE ASP GLU ALA TYR TYR LEU TYR SEQRES 12 B 309 ARG PRO ASP ASN GLU ARG ASP TYR GLY GLN GLU ALA ILE SEQRES 13 B 309 GLU ILE LEU LEU GLN VAL MET GLU ASN ASN ARG ASP ASP SEQRES 14 B 309 LEU VAL VAL ILE LEU ALA GLY TYR ALA ASP ARG MET GLU SEQRES 15 B 309 ASN PHE PHE GLN SER ASN PRO GLY PHE ARG SER ARG ILE SEQRES 16 B 309 ALA HIS HIS ILE GLU PHE PRO ASP TYR SER ASP GLU GLU SEQRES 17 B 309 LEU PHE GLU ILE ALA GLY HIS MET LEU ASP ASP GLN ASN SEQRES 18 B 309 TYR GLN MET THR PRO GLU ALA GLU THR ALA LEU ARG ALA SEQRES 19 B 309 TYR ILE GLY LEU ARG ARG ASN GLN PRO HIS PHE ALA ASN SEQRES 20 B 309 ALA ARG SER ILE ARG ASN ALA LEU ASP ARG ALA ARG LEU SEQRES 21 B 309 ARG GLN ALA ASN ARG LEU PHE THR ALA SER SER GLY PRO SEQRES 22 B 309 LEU ASP ALA ARG ALA LEU SER THR ILE ALA GLU GLU ASP SEQRES 23 B 309 ILE ARG ALA SER ARG VAL PHE LYS GLY GLY LEU ASP SER SEQRES 24 B 309 GLU ARG ARG ALA ALA GLU ALA LEU ALA ARG HET SO4 A 310 5 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 B 310 5 HET SO4 B 311 5 HET SO4 B 312 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *23(H2 O) HELIX 1 1 ASP A 12 SER A 20 1 9 HELIX 2 2 GLY A 21 LEU A 33 1 13 HELIX 3 3 LEU A 36 GLY A 60 1 25 HELIX 4 4 GLY A 79 LEU A 94 1 16 HELIX 5 5 THR A 106 LEU A 110 5 5 HELIX 6 6 HIS A 117 MET A 130 1 14 HELIX 7 7 ALA A 139 LEU A 142 5 4 HELIX 8 8 GLY A 152 ASN A 166 1 15 HELIX 9 9 TYR A 177 ASN A 188 1 12 HELIX 10 10 GLY A 190 ARG A 194 1 5 HELIX 11 11 SER A 205 GLN A 220 1 16 HELIX 12 12 THR A 225 ARG A 240 1 16 HELIX 13 13 ALA A 246 ALA A 269 1 24 HELIX 14 14 ALA A 276 SER A 280 1 5 HELIX 15 15 ALA A 283 ALA A 289 1 7 HELIX 16 16 ASP B 12 GLY B 21 1 10 HELIX 17 17 GLY B 21 GLU B 32 1 12 HELIX 18 18 LEU B 36 LYS B 58 1 23 HELIX 19 19 GLY B 79 LEU B 94 1 16 HELIX 20 20 THR B 106 LEU B 110 5 5 HELIX 21 21 THR B 118 MET B 130 1 13 HELIX 22 22 ALA B 139 TYR B 143 5 5 HELIX 23 23 TYR B 151 ASN B 165 1 15 HELIX 24 24 TYR B 177 ASN B 188 1 12 HELIX 25 25 SER B 205 GLN B 220 1 16 HELIX 26 26 THR B 225 ARG B 240 1 16 HELIX 27 27 ASN B 247 SER B 270 1 24 HELIX 28 28 ASP B 275 SER B 280 1 6 HELIX 29 29 ALA B 283 ALA B 289 1 7 SHEET 1 A 5 LEU A 102 VAL A 105 0 SHEET 2 A 5 VAL A 133 ASP A 137 1 O ASP A 137 N VAL A 105 SHEET 3 A 5 VAL A 171 GLY A 176 1 O VAL A 171 N LEU A 134 SHEET 4 A 5 HIS A 69 GLY A 74 1 N PHE A 72 O LEU A 174 SHEET 5 A 5 ILE A 195 PHE A 201 1 O HIS A 197 N SER A 71 SHEET 1 B 2 GLN A 223 MET A 224 0 SHEET 2 B 2 THR A 281 ILE A 282 1 O ILE A 282 N GLN A 223 SHEET 1 C 2 LEU A 274 ASP A 275 0 SHEET 2 C 2 SER B 10 ILE B 11 -1 O ILE B 11 N LEU A 274 SHEET 1 D 5 LEU B 102 VAL B 105 0 SHEET 2 D 5 VAL B 133 ASP B 137 1 O VAL B 133 N VAL B 103 SHEET 3 D 5 VAL B 171 GLY B 176 1 O VAL B 171 N LEU B 134 SHEET 4 D 5 MET B 70 GLY B 74 1 N PHE B 72 O LEU B 174 SHEET 5 D 5 HIS B 197 PHE B 201 1 O PHE B 201 N THR B 73 SHEET 1 E 2 GLN B 223 MET B 224 0 SHEET 2 E 2 THR B 281 ILE B 282 1 O ILE B 282 N GLN B 223 SITE 1 AC1 6 PRO A 76 GLY A 77 THR A 78 GLY A 79 SITE 2 AC1 6 LYS A 80 THR A 81 SITE 1 AC2 4 ARG A 239 SER A 250 ASN A 253 ARG A 257 SITE 1 AC3 5 ARG A 257 ARG A 261 SER A 290 ARG A 291 SITE 2 AC3 5 HOH A 321 SITE 1 AC4 5 GLY B 77 THR B 78 GLY B 79 LYS B 80 SITE 2 AC4 5 THR B 81 SITE 1 AC5 4 ARG B 239 SER B 250 ASN B 253 ARG B 257 SITE 1 AC6 3 ARG B 261 SER B 290 ARG B 291 CRYST1 76.128 93.141 106.102 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009425 0.00000