HEADER HYDROLASE 18-JUL-11 3SYU TITLE RE-REFINED COORDINATES FOR PDB ENTRY 1DET - RIBONUCLEASE T1 TITLE 2 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYL-SPECIFIC RIBONUCLEASE T1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE T1; COMPND 5 EC: 3.1.27.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; SOURCE 3 ORGANISM_TAXID: 510516; SOURCE 4 STRAIN: ATCC 42149 / RIB 40 KEYWDS HYDROLASE, ENDORIBONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR O.S.SMART,T.O.WOMACK,G.BRICOGNE REVDAT 4 15-NOV-23 3SYU 1 ATOM REVDAT 3 13-SEP-23 3SYU 1 REMARK LINK REVDAT 2 02-MAY-12 3SYU 1 JRNL REVDAT 1 28-MAR-12 3SYU 0 JRNL AUTH O.S.SMART,T.O.WOMACK,C.FLENSBURG,P.KELLER,W.PACIOREK, JRNL AUTH 2 A.SHARFF,C.VONRHEIN,G.BRICOGNE JRNL TITL EXPLOITING STRUCTURE SIMILARITY IN REFINEMENT: AUTOMATED NCS JRNL TITL 2 AND TARGET-STRUCTURE RESTRAINTS IN BUSTER. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 368 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22505257 JRNL DOI 10.1107/S0907444911056058 REMARK 0 REMARK 0 THIS ENTRY 3SYU REFLECTS AN ALTERNATIVE MODELING OF X-RAY DATA REMARK 0 IN 1DET. ORIGINAL DATA DETERMINED BY AUTHOR: K.ISHIKAWA,E.SUZUKI, REMARK 0 M.TANOKURA,K.TAKAHASHI REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 1DET REMARK 0 AUTH K.ISHIKAWA,E.SUZUKI,M.TANOKURA,K.TAKAHASHI REMARK 0 TITL CRYSTAL STRUCTURE OF RIBONUCLEASE T1 CARBOXYMETHYLATED AT REMARK 0 TITL 2 GLU58 IN COMPLEX WITH 2'-GMP. REMARK 0 REF BIOCHEMISTRY V. 35 8329 1996 REMARK 0 REFN ISSN 0006-2960 REMARK 0 PMID 8679590 REMARK 0 DOI 10.1021/BI960493D REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.13.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 8365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : IN RE-REFINEMENT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 416 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.27 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2298 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1400 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2189 REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE : 0.1808 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 109 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.189 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.169 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1518 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2687 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 313 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 24 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 264 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1518 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 103 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1609 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.39 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.1322 -46.7198 14.8879 REMARK 3 T TENSOR REMARK 3 T11: -0.0472 T22: -0.0453 REMARK 3 T33: -0.0664 T12: 0.0187 REMARK 3 T13: 0.0227 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 4.4966 L22: 1.6031 REMARK 3 L33: 2.3279 L12: -0.4423 REMARK 3 L13: -1.0064 L23: -0.2293 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.3042 S13: -0.1118 REMARK 3 S21: 0.3166 S22: -0.0010 S23: -0.0561 REMARK 3 S31: -0.0910 S32: 0.2916 S33: -0.0155 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RE-REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1DET REMARK 200 REMARK 200 REMARK: AUTHOR USED THE SF DATA FROM ENTRY 1DET. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 44.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 UNK UNX A 991 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 218 O HOH A 223 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 98 UNK UNX A 991 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 71.45 49.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 30 O REMARK 620 2 HOH A 236 O 102.4 REMARK 620 3 HOH A 992 O 90.9 71.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GP A 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DET RELATED DB: PDB REMARK 900 RE-REFINED COORDINATES FOR PDB ENTRY 1DET - RIBONUCLEASE T1 REMARK 900 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP DBREF 3SYU A 1 104 UNP P00651 RNT1_ASPOR 27 130 SEQRES 1 A 104 ALA CYS ASP TYR THR CYS GLY SER ASN CYS TYR SER SER SEQRES 2 A 104 SER ASP VAL SER THR ALA GLN ALA ALA GLY TYR GLN LEU SEQRES 3 A 104 HIS GLU ASP GLY GLU THR VAL GLY SER ASN SER TYR PRO SEQRES 4 A 104 HIS LYS TYR ASN ASN TYR GLU GLY PHE ASP PHE SER VAL SEQRES 5 A 104 SER SER PRO TYR TYR CGA TRP PRO ILE LEU SER SER GLY SEQRES 6 A 104 ASP VAL TYR SER GLY GLY SER PRO GLY ALA ASP ARG VAL SEQRES 7 A 104 VAL PHE ASN GLU ASN ASN GLN LEU ALA GLY VAL ILE THR SEQRES 8 A 104 HIS THR GLY ALA SER GLY ASN ASN PHE VAL GLU CYS THR MODRES 3SYU CGA A 58 GLU CARBOXYMETHYLATED GLUTAMIC ACID HET CGA A 58 19 HET NA A 106 1 HET NA A 107 1 HET 2GP A 105 37 HET UNX A 991 1 HETNAM CGA CARBOXYMETHYLATED GLUTAMIC ACID HETNAM NA SODIUM ION HETNAM 2GP GUANOSINE-2'-MONOPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 CGA C7 H11 N O6 FORMUL 2 NA 2(NA 1+) FORMUL 4 2GP C10 H14 N5 O8 P FORMUL 5 UNX X FORMUL 6 HOH *46(H2 O) HELIX 1 1 SER A 12 GLY A 30 1 19 SHEET 1 A 2 TYR A 4 CYS A 6 0 SHEET 2 A 2 ASN A 9 TYR A 11 -1 O TYR A 11 N TYR A 4 SHEET 1 B 5 HIS A 40 TYR A 42 0 SHEET 2 B 5 TYR A 56 PRO A 60 -1 O CGA A 58 N HIS A 40 SHEET 3 B 5 ASP A 76 ASN A 81 -1 O PHE A 80 N TYR A 57 SHEET 4 B 5 LEU A 86 THR A 91 -1 O ALA A 87 N VAL A 79 SHEET 5 B 5 VAL A 101 GLU A 102 -1 O VAL A 101 N THR A 91 SSBOND 1 CYS A 2 CYS A 10 1555 1555 2.03 SSBOND 2 CYS A 6 CYS A 103 1555 1555 2.03 LINK C TYR A 57 N CGA A 58 1555 1555 1.31 LINK C CGA A 58 N TRP A 59 1555 1555 1.32 LINK O GLY A 30 NA NA A 106 1555 1555 2.40 LINK NA NA A 106 O HOH A 236 1555 1555 2.23 LINK NA NA A 106 O HOH A 992 1555 1555 2.55 LINK NA NA A 107 O HOH A 268 1555 1555 2.39 CISPEP 1 TYR A 38 PRO A 39 0 -3.49 CISPEP 2 SER A 54 PRO A 55 0 2.78 SITE 1 AC1 6 GLY A 30 HIS A 92 ALA A 95 HOH A 206 SITE 2 AC1 6 HOH A 236 HOH A 992 SITE 1 AC2 5 THR A 32 TYR A 45 HOH A 220 HOH A 256 SITE 2 AC2 5 HOH A 268 SITE 1 AC3 12 TYR A 42 ASN A 43 ASN A 44 TYR A 45 SITE 2 AC3 12 GLU A 46 CGA A 58 ASN A 98 PHE A 100 SITE 3 AC3 12 HOH A 231 HOH A 258 HOH A 260 HOH A 267 CRYST1 88.690 88.690 88.690 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011275 0.00000