HEADER BIOTIN-BINDING PROTEIN 19-JUL-11 3SZH TITLE CRYSTAL STRUCTURE OF APO SHWANAVIDIN (P1 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIDIN/STREPTAVIDIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 318161; SOURCE 4 STRAIN: OS217 / ATCC BAA-1090 / DSM 15013; SOURCE 5 GENE: SDEN_0912; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIGH AFFINITY SYSTEMS, AVIDIN, STREPTAVIDIN, BIOTIN, SHWANAVIDIN, KEYWDS 2 BIOTIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,A.MEIR REVDAT 3 13-JUN-12 3SZH 1 JRNL REVDAT 2 25-APR-12 3SZH 1 JRNL REVDAT 1 11-APR-12 3SZH 0 JRNL AUTH A.MEIR,E.A.BAYER,O.LIVNAH JRNL TITL STRUCTURAL ADAPTATION OF A THERMOSTABLE BIOTIN-BINDING JRNL TITL 2 PROTEIN IN A PSYCHROPHILIC ENVIRONMENT. JRNL REF J.BIOL.CHEM. V. 287 17951 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22493427 JRNL DOI 10.1074/JBC.M112.357186 REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 243993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 12987 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 928 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5292 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 851 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.49000 REMARK 3 B23 (A**2) : 0.69000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.161 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5647 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7785 ; 1.429 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 791 ; 6.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;35.757 ;25.852 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 872 ;11.483 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 6.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 894 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4306 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2640 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3936 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 669 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3681 ; 1.375 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5831 ; 2.026 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2369 ; 2.480 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1898 ; 3.122 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6050 ; 1.454 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 856 ; 5.810 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5471 ; 6.084 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3SZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB066845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : OPTICAL HUTCH REMARK 200 OPTICS : OPTICAL HUTCH REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 257028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 61.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 MG/ML PROTEIN IN 0.1 M IN ACETIC REMARK 280 ACID, PH 3.0 MIXED WITH 170 MM BIS-TRIS PH 6.0-6.8, 2.0 M SODIUM REMARK 280 FORMATE, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 THR A 87 REMARK 465 GLY A 88 REMARK 465 ALA A 122 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 87 REMARK 465 GLY B 88 REMARK 465 SER B 121 REMARK 465 ALA B 122 REMARK 465 MET C 1 REMARK 465 GLY C 42 REMARK 465 GLY C 88 REMARK 465 SER C 121 REMARK 465 ALA C 122 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 42 REMARK 465 GLY D 88 REMARK 465 SER D 121 REMARK 465 ALA D 122 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 MET E 3 REMARK 465 GLY E 42 REMARK 465 SER E 121 REMARK 465 ALA E 122 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 MET F 3 REMARK 465 SER F 121 REMARK 465 ALA F 122 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 43 CZ REMARK 480 ASN A 86 CG REMARK 480 GLN A 114 OE1 REMARK 480 GLU B 6 OE1 OE2 REMARK 480 GLN B 90 OE1 NE2 REMARK 480 GLU C 6 OE1 OE2 REMARK 480 GLN C 16 CG REMARK 480 PHE C 43 CD2 REMARK 480 GLN C 90 OE1 NE2 REMARK 480 GLU D 6 CG CD OE1 OE2 REMARK 480 GLN D 114 OE1 REMARK 480 PHE E 43 CE1 REMARK 480 GLN E 90 CG CD OE1 NE2 REMARK 480 LYS E 112 CE NZ REMARK 480 GLU F 6 CD REMARK 480 PHE F 43 CG CD1 CD2 CE1 CE2 CZ REMARK 480 LYS F 92 CD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER E 73 O HOH E 145 2.08 REMARK 500 OG SER B 62 O HOH B 141 2.10 REMARK 500 OG SER D 62 O HOH D 133 2.13 REMARK 500 OG SER F 73 O HOH F 849 2.13 REMARK 500 OG SER A 62 O HOH A 140 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 43 CZ PHE A 43 CE2 0.123 REMARK 500 ASN A 86 CB ASN A 86 CG 0.288 REMARK 500 ASN A 86 CG ASN A 86 OD1 0.199 REMARK 500 ASN A 86 CG ASN A 86 ND2 0.412 REMARK 500 GLU B 6 CD GLU B 6 OE1 -0.243 REMARK 500 GLU B 6 CD GLU B 6 OE2 0.291 REMARK 500 GLN B 90 CD GLN B 90 OE1 -0.288 REMARK 500 GLN B 90 CD GLN B 90 NE2 0.199 REMARK 500 GLN C 16 CB GLN C 16 CG 0.247 REMARK 500 GLN C 16 CG GLN C 16 CD 0.164 REMARK 500 PHE C 43 CE2 PHE C 43 CD2 0.204 REMARK 500 GLN C 90 CD GLN C 90 NE2 0.226 REMARK 500 PHE E 43 CE1 PHE E 43 CZ 0.173 REMARK 500 GLU F 6 CD GLU F 6 OE1 0.512 REMARK 500 GLU F 6 CD GLU F 6 OE2 0.279 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 86 CA - CB - CG ANGL. DEV. = -18.4 DEGREES REMARK 500 GLU B 6 CG - CD - OE1 ANGL. DEV. = 14.1 DEGREES REMARK 500 GLU B 6 CG - CD - OE2 ANGL. DEV. = -13.9 DEGREES REMARK 500 GLN B 90 CG - CD - NE2 ANGL. DEV. = -16.7 DEGREES REMARK 500 PHE C 43 CZ - CE2 - CD2 ANGL. DEV. = -8.4 DEGREES REMARK 500 GLN C 90 CG - CD - OE1 ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU F 6 OE1 - CD - OE2 ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 24 -77.51 -89.67 REMARK 500 ASN D 24 -67.73 -92.44 REMARK 500 ALA D 44 -160.17 -66.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 86 0.08 SIDE CHAIN REMARK 500 GLU B 6 0.08 SIDE CHAIN REMARK 500 GLU C 6 0.08 SIDE CHAIN REMARK 500 GLN C 16 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 826 DISTANCE = 6.65 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EW1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHIZAVIDIN REMARK 900 RELATED ID: 3EW2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RHIZAVIDIN-BIOTIN COMPLEX REMARK 900 RELATED ID: 3SZI RELATED DB: PDB REMARK 900 RELATED ID: 3SZJ RELATED DB: PDB REMARK 900 RELATED ID: 3T2W RELATED DB: PDB REMARK 900 RELATED ID: 3T2X RELATED DB: PDB DBREF 3SZH A 3 122 UNP Q12QS6 Q12QS6_SHEDO 43 162 DBREF 3SZH B 3 122 UNP Q12QS6 Q12QS6_SHEDO 43 162 DBREF 3SZH C 3 122 UNP Q12QS6 Q12QS6_SHEDO 43 162 DBREF 3SZH D 3 122 UNP Q12QS6 Q12QS6_SHEDO 43 162 DBREF 3SZH E 3 122 UNP Q12QS6 Q12QS6_SHEDO 43 162 DBREF 3SZH F 3 122 UNP Q12QS6 Q12QS6_SHEDO 43 162 SEQADV 3SZH MET A 1 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH ALA A 2 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH MET B 1 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH ALA B 2 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH MET C 1 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH ALA C 2 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH MET D 1 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH ALA D 2 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH MET E 1 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH ALA E 2 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH MET F 1 UNP Q12QS6 EXPRESSION TAG SEQADV 3SZH ALA F 2 UNP Q12QS6 EXPRESSION TAG SEQRES 1 A 122 MET ALA MET ALA GLN GLU LEU THR ALA MET SER ALA TRP SEQRES 2 A 122 VAL ASN GLN ASP GLY SER THR LEU TYR ILE ASN SER ILE SEQRES 3 A 122 ASN ALA GLN GLY GLU LEU THR GLY SER TYR ILE ASN ARG SEQRES 4 A 122 ALA ALA GLY PHE ALA CYS GLN ASN SER PRO TYR PRO VAL SEQRES 5 A 122 ASN GLY TRP VAL PHE GLY THR ALA ILE SER PHE SER THR SEQRES 6 A 122 LYS TRP LEU ASN SER VAL GLU SER CYS ASN SER ILE THR SEQRES 7 A 122 SER TRP SER GLY PHE TYR ILE ASN THR GLY GLY GLN GLY SEQRES 8 A 122 LYS ILE SER THR LEU TRP GLN LEU VAL VAL ASN GLY SER SEQRES 9 A 122 SER SER PRO SER GLN ILE LEU LYS GLY GLN ASP VAL PHE SEQRES 10 A 122 SER GLN THR SER ALA SEQRES 1 B 122 MET ALA MET ALA GLN GLU LEU THR ALA MET SER ALA TRP SEQRES 2 B 122 VAL ASN GLN ASP GLY SER THR LEU TYR ILE ASN SER ILE SEQRES 3 B 122 ASN ALA GLN GLY GLU LEU THR GLY SER TYR ILE ASN ARG SEQRES 4 B 122 ALA ALA GLY PHE ALA CYS GLN ASN SER PRO TYR PRO VAL SEQRES 5 B 122 ASN GLY TRP VAL PHE GLY THR ALA ILE SER PHE SER THR SEQRES 6 B 122 LYS TRP LEU ASN SER VAL GLU SER CYS ASN SER ILE THR SEQRES 7 B 122 SER TRP SER GLY PHE TYR ILE ASN THR GLY GLY GLN GLY SEQRES 8 B 122 LYS ILE SER THR LEU TRP GLN LEU VAL VAL ASN GLY SER SEQRES 9 B 122 SER SER PRO SER GLN ILE LEU LYS GLY GLN ASP VAL PHE SEQRES 10 B 122 SER GLN THR SER ALA SEQRES 1 C 122 MET ALA MET ALA GLN GLU LEU THR ALA MET SER ALA TRP SEQRES 2 C 122 VAL ASN GLN ASP GLY SER THR LEU TYR ILE ASN SER ILE SEQRES 3 C 122 ASN ALA GLN GLY GLU LEU THR GLY SER TYR ILE ASN ARG SEQRES 4 C 122 ALA ALA GLY PHE ALA CYS GLN ASN SER PRO TYR PRO VAL SEQRES 5 C 122 ASN GLY TRP VAL PHE GLY THR ALA ILE SER PHE SER THR SEQRES 6 C 122 LYS TRP LEU ASN SER VAL GLU SER CYS ASN SER ILE THR SEQRES 7 C 122 SER TRP SER GLY PHE TYR ILE ASN THR GLY GLY GLN GLY SEQRES 8 C 122 LYS ILE SER THR LEU TRP GLN LEU VAL VAL ASN GLY SER SEQRES 9 C 122 SER SER PRO SER GLN ILE LEU LYS GLY GLN ASP VAL PHE SEQRES 10 C 122 SER GLN THR SER ALA SEQRES 1 D 122 MET ALA MET ALA GLN GLU LEU THR ALA MET SER ALA TRP SEQRES 2 D 122 VAL ASN GLN ASP GLY SER THR LEU TYR ILE ASN SER ILE SEQRES 3 D 122 ASN ALA GLN GLY GLU LEU THR GLY SER TYR ILE ASN ARG SEQRES 4 D 122 ALA ALA GLY PHE ALA CYS GLN ASN SER PRO TYR PRO VAL SEQRES 5 D 122 ASN GLY TRP VAL PHE GLY THR ALA ILE SER PHE SER THR SEQRES 6 D 122 LYS TRP LEU ASN SER VAL GLU SER CYS ASN SER ILE THR SEQRES 7 D 122 SER TRP SER GLY PHE TYR ILE ASN THR GLY GLY GLN GLY SEQRES 8 D 122 LYS ILE SER THR LEU TRP GLN LEU VAL VAL ASN GLY SER SEQRES 9 D 122 SER SER PRO SER GLN ILE LEU LYS GLY GLN ASP VAL PHE SEQRES 10 D 122 SER GLN THR SER ALA SEQRES 1 E 122 MET ALA MET ALA GLN GLU LEU THR ALA MET SER ALA TRP SEQRES 2 E 122 VAL ASN GLN ASP GLY SER THR LEU TYR ILE ASN SER ILE SEQRES 3 E 122 ASN ALA GLN GLY GLU LEU THR GLY SER TYR ILE ASN ARG SEQRES 4 E 122 ALA ALA GLY PHE ALA CYS GLN ASN SER PRO TYR PRO VAL SEQRES 5 E 122 ASN GLY TRP VAL PHE GLY THR ALA ILE SER PHE SER THR SEQRES 6 E 122 LYS TRP LEU ASN SER VAL GLU SER CYS ASN SER ILE THR SEQRES 7 E 122 SER TRP SER GLY PHE TYR ILE ASN THR GLY GLY GLN GLY SEQRES 8 E 122 LYS ILE SER THR LEU TRP GLN LEU VAL VAL ASN GLY SER SEQRES 9 E 122 SER SER PRO SER GLN ILE LEU LYS GLY GLN ASP VAL PHE SEQRES 10 E 122 SER GLN THR SER ALA SEQRES 1 F 122 MET ALA MET ALA GLN GLU LEU THR ALA MET SER ALA TRP SEQRES 2 F 122 VAL ASN GLN ASP GLY SER THR LEU TYR ILE ASN SER ILE SEQRES 3 F 122 ASN ALA GLN GLY GLU LEU THR GLY SER TYR ILE ASN ARG SEQRES 4 F 122 ALA ALA GLY PHE ALA CYS GLN ASN SER PRO TYR PRO VAL SEQRES 5 F 122 ASN GLY TRP VAL PHE GLY THR ALA ILE SER PHE SER THR SEQRES 6 F 122 LYS TRP LEU ASN SER VAL GLU SER CYS ASN SER ILE THR SEQRES 7 F 122 SER TRP SER GLY PHE TYR ILE ASN THR GLY GLY GLN GLY SEQRES 8 F 122 LYS ILE SER THR LEU TRP GLN LEU VAL VAL ASN GLY SER SEQRES 9 F 122 SER SER PRO SER GLN ILE LEU LYS GLY GLN ASP VAL PHE SEQRES 10 F 122 SER GLN THR SER ALA FORMUL 7 HOH *851(H2 O) HELIX 1 1 SER A 106 ILE A 110 5 5 HELIX 2 2 SER B 106 ILE B 110 5 5 HELIX 3 3 SER C 106 ILE C 110 5 5 HELIX 4 4 SER D 106 ILE D 110 5 5 HELIX 5 5 SER E 106 ILE E 110 5 5 HELIX 6 6 SER F 106 ILE F 110 5 5 SHEET 1 A 9 SER A 11 VAL A 14 0 SHEET 2 A 9 THR A 20 ILE A 26 -1 O ILE A 23 N SER A 11 SHEET 3 A 9 GLU A 31 ILE A 37 -1 O SER A 35 N TYR A 22 SHEET 4 A 9 TYR A 50 PHE A 57 -1 O VAL A 52 N GLY A 34 SHEET 5 A 9 ALA A 60 LEU A 68 -1 O ALA A 60 N PHE A 57 SHEET 6 A 9 SER A 73 ILE A 85 -1 O TRP A 80 N PHE A 63 SHEET 7 A 9 LYS A 92 VAL A 101 -1 O GLN A 98 N SER A 79 SHEET 8 A 9 LEU A 111 GLN A 119 -1 O PHE A 117 N ILE A 93 SHEET 9 A 9 SER A 11 VAL A 14 -1 N VAL A 14 O SER A 118 SHEET 1 B 9 SER B 11 VAL B 14 0 SHEET 2 B 9 THR B 20 ILE B 26 -1 O ILE B 23 N SER B 11 SHEET 3 B 9 GLU B 31 ILE B 37 -1 O SER B 35 N TYR B 22 SHEET 4 B 9 TYR B 50 PHE B 57 -1 O VAL B 52 N GLY B 34 SHEET 5 B 9 ALA B 60 LEU B 68 -1 O ALA B 60 N PHE B 57 SHEET 6 B 9 SER B 73 ILE B 85 -1 O TRP B 80 N PHE B 63 SHEET 7 B 9 LYS B 92 VAL B 101 -1 O GLN B 98 N SER B 79 SHEET 8 B 9 LEU B 111 GLN B 119 -1 O PHE B 117 N ILE B 93 SHEET 9 B 9 SER B 11 VAL B 14 -1 N VAL B 14 O SER B 118 SHEET 1 C 9 SER C 11 ASN C 15 0 SHEET 2 C 9 THR C 20 ILE C 26 -1 O ILE C 23 N SER C 11 SHEET 3 C 9 GLU C 31 ILE C 37 -1 O SER C 35 N TYR C 22 SHEET 4 C 9 TYR C 50 PHE C 57 -1 O VAL C 52 N GLY C 34 SHEET 5 C 9 ALA C 60 LEU C 68 -1 O ALA C 60 N PHE C 57 SHEET 6 C 9 SER C 73 ASN C 86 -1 O TRP C 80 N PHE C 63 SHEET 7 C 9 GLY C 91 VAL C 101 -1 O GLN C 98 N SER C 79 SHEET 8 C 9 LEU C 111 THR C 120 -1 O PHE C 117 N ILE C 93 SHEET 9 C 9 SER C 11 ASN C 15 -1 N VAL C 14 O SER C 118 SHEET 1 D 9 SER D 11 ASN D 15 0 SHEET 2 D 9 THR D 20 ILE D 26 -1 O ILE D 23 N SER D 11 SHEET 3 D 9 GLU D 31 ILE D 37 -1 O SER D 35 N TYR D 22 SHEET 4 D 9 PRO D 49 PHE D 57 -1 O VAL D 52 N GLY D 34 SHEET 5 D 9 ALA D 60 LEU D 68 -1 O ALA D 60 N PHE D 57 SHEET 6 D 9 SER D 73 ASN D 86 -1 O TRP D 80 N PHE D 63 SHEET 7 D 9 GLY D 91 VAL D 101 -1 O GLN D 98 N SER D 79 SHEET 8 D 9 LEU D 111 GLN D 119 -1 O PHE D 117 N ILE D 93 SHEET 9 D 9 SER D 11 ASN D 15 -1 N VAL D 14 O SER D 118 SHEET 1 E 9 SER E 11 ASN E 15 0 SHEET 2 E 9 THR E 20 ILE E 26 -1 O ILE E 23 N SER E 11 SHEET 3 E 9 GLU E 31 ILE E 37 -1 O SER E 35 N TYR E 22 SHEET 4 E 9 PRO E 49 PHE E 57 -1 O VAL E 52 N GLY E 34 SHEET 5 E 9 ALA E 60 LEU E 68 -1 O ALA E 60 N PHE E 57 SHEET 6 E 9 SER E 73 THR E 87 -1 O TRP E 80 N PHE E 63 SHEET 7 E 9 GLN E 90 VAL E 101 -1 O LYS E 92 N ILE E 85 SHEET 8 E 9 LEU E 111 GLN E 119 -1 O PHE E 117 N ILE E 93 SHEET 9 E 9 SER E 11 ASN E 15 -1 N VAL E 14 O SER E 118 SHEET 1 F 9 SER F 11 ASN F 15 0 SHEET 2 F 9 THR F 20 ILE F 26 -1 O ILE F 23 N SER F 11 SHEET 3 F 9 GLU F 31 ILE F 37 -1 O SER F 35 N TYR F 22 SHEET 4 F 9 TYR F 50 PHE F 57 -1 O VAL F 52 N GLY F 34 SHEET 5 F 9 ALA F 60 LEU F 68 -1 O ALA F 60 N PHE F 57 SHEET 6 F 9 SER F 73 THR F 87 -1 O TRP F 80 N PHE F 63 SHEET 7 F 9 GLN F 90 VAL F 101 -1 O GLN F 90 N THR F 87 SHEET 8 F 9 LEU F 111 GLN F 119 -1 O PHE F 117 N ILE F 93 SHEET 9 F 9 SER F 11 ASN F 15 -1 N VAL F 14 O SER F 118 SSBOND 1 CYS A 45 CYS A 74 1555 1555 2.09 SSBOND 2 CYS B 45 CYS B 74 1555 1555 2.09 SSBOND 3 CYS C 45 CYS C 74 1555 1555 2.13 SSBOND 4 CYS D 45 CYS D 74 1555 1555 2.10 SSBOND 5 CYS E 45 CYS E 74 1555 1555 2.07 SSBOND 6 CYS F 45 CYS F 74 1555 1555 2.09 CRYST1 43.332 63.503 67.745 103.83 107.28 103.84 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023078 0.005685 0.009636 0.00000 SCALE2 0.000000 0.016218 0.005756 0.00000 SCALE3 0.000000 0.000000 0.016404 0.00000