data_3SZQ # _entry.id 3SZQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3SZQ NDB NA1234 RCSB RCSB066854 WWPDB D_1000066854 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SZQ _pdbx_database_status.recvd_initial_deposition_date 2011-07-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tumbale, P.' 1 'Krahn, J.' 2 'Williams, R.S.' 3 # _citation.id primary _citation.title 'Structure of an aprataxin-DNA complex with insights into AOA1 neurodegenerative disease.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 1189 _citation.page_last 1195 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21984210 _citation.pdbx_database_id_DOI 10.1038/nsmb.2146 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tumbale, P.' 1 primary 'Appel, C.D.' 2 primary 'Kraehenbuehl, R.' 3 primary 'Robertson, P.D.' 4 primary 'Williams, J.S.' 5 primary 'Krahn, J.' 6 primary 'Ahel, I.' 7 primary 'Williams, R.S.' 8 # _cell.entry_id 3SZQ _cell.length_a 157.050 _cell.length_b 157.050 _cell.length_c 157.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SZQ _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Aprataxin-like protein' 23897.436 1 3.-.-.- ? 'APTX HIT-ZNF catalytic domain (UNP residues 31-232)' ? 2 polymer syn "5'-D(*CP*CP*CP*TP*G)-3'" 1455.987 1 ? ? ? ? 3 polymer syn "5'-D(*TP*AP*TP*CP*GP*GP*AP*AP*TP*CP*AP*GP*GP*G)-3'" 4344.840 1 ? ? ? ? 4 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 5 non-polymer syn BETA-MERCAPTOETHANOL 78.133 2 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 7 water nat water 18.015 211 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Hit family protein 3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMKQSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQG DLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTSNLPT RGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVSM ; ;GSHMKQSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQG DLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTSNLPT RGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVSM ; A ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DT)(DG)' CCCTG B ? 3 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DC)(DG)(DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)(DG)' TATCGGAATCAGGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 LYS n 1 6 GLN n 1 7 SER n 1 8 PHE n 1 9 ARG n 1 10 ASP n 1 11 ASN n 1 12 LEU n 1 13 LYS n 1 14 VAL n 1 15 TYR n 1 16 ILE n 1 17 GLU n 1 18 SER n 1 19 PRO n 1 20 GLU n 1 21 SER n 1 22 TYR n 1 23 LYS n 1 24 ASN n 1 25 VAL n 1 26 ILE n 1 27 TYR n 1 28 TYR n 1 29 ASP n 1 30 ASP n 1 31 ASP n 1 32 VAL n 1 33 VAL n 1 34 LEU n 1 35 VAL n 1 36 ARG n 1 37 ASP n 1 38 MET n 1 39 PHE n 1 40 PRO n 1 41 LYS n 1 42 SER n 1 43 LYS n 1 44 MET n 1 45 HIS n 1 46 LEU n 1 47 LEU n 1 48 LEU n 1 49 MET n 1 50 THR n 1 51 ARG n 1 52 ASP n 1 53 PRO n 1 54 HIS n 1 55 LEU n 1 56 THR n 1 57 HIS n 1 58 VAL n 1 59 HIS n 1 60 PRO n 1 61 LEU n 1 62 GLU n 1 63 ILE n 1 64 MET n 1 65 MET n 1 66 LYS n 1 67 HIS n 1 68 ARG n 1 69 SER n 1 70 LEU n 1 71 VAL n 1 72 GLU n 1 73 LYS n 1 74 LEU n 1 75 VAL n 1 76 SER n 1 77 TYR n 1 78 VAL n 1 79 GLN n 1 80 GLY n 1 81 ASP n 1 82 LEU n 1 83 SER n 1 84 GLY n 1 85 LEU n 1 86 ILE n 1 87 PHE n 1 88 ASP n 1 89 GLU n 1 90 ALA n 1 91 ARG n 1 92 ASN n 1 93 CYS n 1 94 LEU n 1 95 SER n 1 96 GLN n 1 97 GLN n 1 98 LEU n 1 99 THR n 1 100 ASN n 1 101 GLU n 1 102 ALA n 1 103 LEU n 1 104 CYS n 1 105 ASN n 1 106 TYR n 1 107 ILE n 1 108 LYS n 1 109 VAL n 1 110 GLY n 1 111 PHE n 1 112 HIS n 1 113 ALA n 1 114 GLY n 1 115 PRO n 1 116 SER n 1 117 MET n 1 118 ASN n 1 119 ASN n 1 120 LEU n 1 121 HIS n 1 122 LEU n 1 123 HIS n 1 124 ILE n 1 125 MET n 1 126 THR n 1 127 LEU n 1 128 ASP n 1 129 HIS n 1 130 VAL n 1 131 SER n 1 132 PRO n 1 133 SER n 1 134 LEU n 1 135 LYS n 1 136 ASN n 1 137 SER n 1 138 ALA n 1 139 HIS n 1 140 TYR n 1 141 ILE n 1 142 SER n 1 143 PHE n 1 144 THR n 1 145 SER n 1 146 PRO n 1 147 PHE n 1 148 PHE n 1 149 VAL n 1 150 LYS n 1 151 ILE n 1 152 ASP n 1 153 THR n 1 154 PRO n 1 155 THR n 1 156 SER n 1 157 ASN n 1 158 LEU n 1 159 PRO n 1 160 THR n 1 161 ARG n 1 162 GLY n 1 163 THR n 1 164 LEU n 1 165 THR n 1 166 SER n 1 167 LEU n 1 168 PHE n 1 169 GLN n 1 170 GLU n 1 171 ASP n 1 172 LEU n 1 173 LYS n 1 174 CYS n 1 175 TRP n 1 176 ARG n 1 177 CYS n 1 178 GLY n 1 179 GLU n 1 180 THR n 1 181 PHE n 1 182 GLY n 1 183 ARG n 1 184 HIS n 1 185 PHE n 1 186 THR n 1 187 LYS n 1 188 LEU n 1 189 LYS n 1 190 ALA n 1 191 HIS n 1 192 LEU n 1 193 GLN n 1 194 GLU n 1 195 GLU n 1 196 TYR n 1 197 ASP n 1 198 ASP n 1 199 TRP n 1 200 LEU n 1 201 ASP n 1 202 LYS n 1 203 SER n 1 204 VAL n 1 205 SER n 1 206 MET n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DG n 3 1 DT n 3 2 DA n 3 3 DT n 3 4 DC n 3 5 DG n 3 6 DG n 3 7 DA n 3 8 DA n 3 9 DT n 3 10 DC n 3 11 DA n 3 12 DG n 3 13 DG n 3 14 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'hnt3, SPCC18.09c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 38366 / 972' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP APTX_SCHPO O74859 1 ;KQSFRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSG LIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTSNLPTRGTL TSLFQEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLDKSVSM ; 31 ? 2 PDB 3SZQ 3SZQ 2 CCCTG ? ? 3 PDB 3SZQ 3SZQ 3 TATCGGAATCAGGG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SZQ A 5 ? 206 ? O74859 31 ? 232 ? 31 232 2 2 3SZQ B 1 ? 5 ? 3SZQ 1 ? 5 ? 1 5 3 3 3SZQ C 1 ? 14 ? 3SZQ 1 ? 14 ? 1 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3SZQ GLY A 1 ? UNP O74859 ? ? 'EXPRESSION TAG' 27 1 1 3SZQ SER A 2 ? UNP O74859 ? ? 'EXPRESSION TAG' 28 2 1 3SZQ HIS A 3 ? UNP O74859 ? ? 'EXPRESSION TAG' 29 3 1 3SZQ MET A 4 ? UNP O74859 ? ? 'EXPRESSION TAG' 30 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3SZQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_percent_sol 54.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.0 _exptl_crystal_grow.pdbx_details '0.2 M sodium/potassium tartrate, 20% w/v PEG3350, pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-07-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ;Si(111) Rosenbaum-Rock double-crystal monochromator: LN2-cooled, sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror ; _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2830 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.2830 # _reflns.entry_id 3SZQ _reflns.observed_criterion_sigma_I 4.7 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 49.663 _reflns.d_resolution_high 2.35 _reflns.number_obs 14067 _reflns.number_all 14068 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.462 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3SZQ _refine.ls_number_reflns_obs 14067 _refine.ls_number_reflns_all 14068 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.28 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.832 _refine.ls_d_res_high 2.353 _refine.ls_percent_reflns_obs 99.96 _refine.ls_R_factor_obs 0.1650 _refine.ls_R_factor_all 0.1673 _refine.ls_R_factor_R_work 0.1650 _refine.ls_R_factor_R_free 0.2110 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.81 _refine.ls_number_reflns_R_free 1250 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] -0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.336 _refine.solvent_model_param_bsol 44.410 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.83 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 20.81 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1615 _refine_hist.pdbx_number_atoms_nucleic_acid 264 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 211 _refine_hist.number_atoms_total 2122 _refine_hist.d_res_high 2.353 _refine_hist.d_res_low 24.832 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 2046 ? 'X-RAY DIFFRACTION' f_angle_d 1.062 ? ? 2829 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 17.047 ? ? 766 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.065 ? ? 313 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 308 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.3532 2.4474 2780 0.2076 100.00 0.2698 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.4474 2.5586 2731 0.1933 100.00 0.2787 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.5586 2.6934 2726 0.1857 100.00 0.2361 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.6934 2.8619 2768 0.1774 100.00 0.3004 . . 129 . . . . 'X-RAY DIFFRACTION' . 2.8619 3.0825 2755 0.1727 100.00 0.2103 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.0825 3.3920 2757 0.1569 100.00 0.2365 . . 119 . . . . 'X-RAY DIFFRACTION' . 3.3920 3.8812 2732 0.1551 100.00 0.1869 . . 154 . . . . 'X-RAY DIFFRACTION' . 3.8812 4.8838 2713 0.1308 100.00 0.1580 . . 160 . . . . 'X-RAY DIFFRACTION' . 4.8838 24.8332 2780 0.1773 100.00 0.2073 . . 135 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3SZQ _struct.title 'Structure of an S. pombe APTX/DNA/AMP/Zn complex' _struct.pdbx_descriptor 'Aprataxin-like protein (E.C.3.-.-.-)/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SZQ _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'histidine triad (HIT), C2HE zinc finger, DNA repair, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 7 ? I N N 7 ? J N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? ASN A 11 ? SER A 33 ASN A 37 5 ? 5 HELX_P HELX_P2 2 LEU A 12 ? SER A 18 ? LEU A 38 SER A 44 1 ? 7 HELX_P HELX_P3 3 PRO A 19 ? TYR A 22 ? PRO A 45 TYR A 48 5 ? 4 HELX_P HELX_P4 4 HIS A 54 ? VAL A 58 ? HIS A 80 VAL A 84 5 ? 5 HELX_P HELX_P5 5 HIS A 59 ? HIS A 67 ? HIS A 85 HIS A 93 1 ? 9 HELX_P HELX_P6 6 HIS A 67 ? GLY A 80 ? HIS A 93 GLY A 106 1 ? 14 HELX_P HELX_P7 7 LEU A 82 ? LEU A 94 ? LEU A 108 LEU A 120 1 ? 13 HELX_P HELX_P8 8 THR A 99 ? ASN A 105 ? THR A 125 ASN A 131 1 ? 7 HELX_P HELX_P9 9 ASN A 136 ? SER A 145 ? ASN A 162 SER A 171 1 ? 10 HELX_P HELX_P10 10 PRO A 154 ? LEU A 158 ? PRO A 180 LEU A 184 5 ? 5 HELX_P HELX_P11 11 THR A 160 ? THR A 165 ? THR A 186 THR A 191 1 ? 6 HELX_P HELX_P12 12 SER A 166 ? GLU A 170 ? SER A 192 GLU A 196 5 ? 5 HELX_P HELX_P13 13 HIS A 184 ? VAL A 204 ? HIS A 210 VAL A 230 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A GLU 195 OE2 ? ? ? 1_555 G ZN . ZN ? ? A GLU 221 A ZN 4 1_555 ? ? ? ? ? ? ? 2.029 ? metalc2 metalc ? ? A HIS 191 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 217 A ZN 4 1_555 ? ? ? ? ? ? ? 2.162 ? metalc3 metalc ? ? A CYS 174 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 200 A ZN 4 1_555 ? ? ? ? ? ? ? 2.260 ? metalc4 metalc ? ? A CYS 177 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 203 A ZN 4 1_555 ? ? ? ? ? ? ? 2.555 ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 14 N1 ? ? B DC 1 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 14 O6 ? ? B DC 1 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 14 N2 ? ? B DC 1 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? B DC 2 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? B DC 2 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? B DC 2 C DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 3 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 3 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 3 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 5 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 5 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 5 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 25 ? TYR A 28 ? VAL A 51 TYR A 54 A 2 VAL A 32 ? ARG A 36 ? VAL A 58 ARG A 62 A 3 HIS A 45 ? THR A 50 ? HIS A 71 THR A 76 A 4 HIS A 121 ? THR A 126 ? HIS A 147 THR A 152 A 5 ILE A 107 ? HIS A 112 ? ILE A 133 HIS A 138 A 6 PHE A 148 ? LYS A 150 ? PHE A 174 LYS A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 27 ? N TYR A 53 O LEU A 34 ? O LEU A 60 A 2 3 N VAL A 35 ? N VAL A 61 O LEU A 47 ? O LEU A 73 A 3 4 N LEU A 46 ? N LEU A 72 O ILE A 124 ? O ILE A 150 A 4 5 O MET A 125 ? O MET A 151 N LYS A 108 ? N LYS A 134 A 5 6 N PHE A 111 ? N PHE A 137 O VAL A 149 ? O VAL A 175 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 17 'BINDING SITE FOR RESIDUE AMP A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE BME A 2' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE BME A 3' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 HOH H . ? HOH A 19 . ? 1_555 ? 2 AC1 17 LEU A 12 ? LEU A 38 . ? 1_555 ? 3 AC1 17 TYR A 15 ? TYR A 41 . ? 1_555 ? 4 AC1 17 ASP A 37 ? ASP A 63 . ? 1_555 ? 5 AC1 17 MET A 38 ? MET A 64 . ? 1_555 ? 6 AC1 17 PHE A 39 ? PHE A 65 . ? 1_555 ? 7 AC1 17 LYS A 41 ? LYS A 67 . ? 1_555 ? 8 AC1 17 HIS A 45 ? HIS A 71 . ? 1_555 ? 9 AC1 17 HIS A 112 ? HIS A 138 . ? 1_555 ? 10 AC1 17 PRO A 115 ? PRO A 141 . ? 1_555 ? 11 AC1 17 SER A 116 ? SER A 142 . ? 1_555 ? 12 AC1 17 MET A 117 ? MET A 143 . ? 1_555 ? 13 AC1 17 HIS A 121 ? HIS A 147 . ? 1_555 ? 14 AC1 17 HIS A 123 ? HIS A 149 . ? 1_555 ? 15 AC1 17 HOH H . ? HOH A 246 . ? 1_555 ? 16 AC1 17 HOH H . ? HOH A 316 . ? 1_555 ? 17 AC1 17 DC B 1 ? DC B 1 . ? 1_555 ? 18 AC2 4 LYS A 108 ? LYS A 134 . ? 1_555 ? 19 AC2 4 VAL A 109 ? VAL A 135 . ? 1_555 ? 20 AC2 4 LYS A 150 ? LYS A 176 . ? 1_555 ? 21 AC2 4 ASP A 152 ? ASP A 178 . ? 1_555 ? 22 AC3 3 SER A 116 ? SER A 142 . ? 1_555 ? 23 AC3 3 HOH H . ? HOH A 316 . ? 1_555 ? 24 AC3 3 DC B 1 ? DC B 1 . ? 1_555 ? 25 AC4 4 CYS A 174 ? CYS A 200 . ? 1_555 ? 26 AC4 4 CYS A 177 ? CYS A 203 . ? 1_555 ? 27 AC4 4 HIS A 191 ? HIS A 217 . ? 1_555 ? 28 AC4 4 GLU A 195 ? GLU A 221 . ? 1_555 ? # _database_PDB_matrix.entry_id 3SZQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3SZQ _atom_sites.fract_transf_matrix[1][1] 0.006367 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006367 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006367 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 27 ? ? ? A . n A 1 2 SER 2 28 ? ? ? A . n A 1 3 HIS 3 29 ? ? ? A . n A 1 4 MET 4 30 ? ? ? A . n A 1 5 LYS 5 31 ? ? ? A . n A 1 6 GLN 6 32 32 GLN GLN A . n A 1 7 SER 7 33 33 SER SER A . n A 1 8 PHE 8 34 34 PHE PHE A . n A 1 9 ARG 9 35 35 ARG ARG A . n A 1 10 ASP 10 36 36 ASP ASP A . n A 1 11 ASN 11 37 37 ASN ASN A . n A 1 12 LEU 12 38 38 LEU LEU A . n A 1 13 LYS 13 39 39 LYS LYS A . n A 1 14 VAL 14 40 40 VAL VAL A . n A 1 15 TYR 15 41 41 TYR TYR A . n A 1 16 ILE 16 42 42 ILE ILE A . n A 1 17 GLU 17 43 43 GLU GLU A . n A 1 18 SER 18 44 44 SER SER A . n A 1 19 PRO 19 45 45 PRO PRO A . n A 1 20 GLU 20 46 46 GLU GLU A . n A 1 21 SER 21 47 47 SER SER A . n A 1 22 TYR 22 48 48 TYR TYR A . n A 1 23 LYS 23 49 49 LYS LYS A . n A 1 24 ASN 24 50 50 ASN ASN A . n A 1 25 VAL 25 51 51 VAL VAL A . n A 1 26 ILE 26 52 52 ILE ILE A . n A 1 27 TYR 27 53 53 TYR TYR A . n A 1 28 TYR 28 54 54 TYR TYR A . n A 1 29 ASP 29 55 55 ASP ASP A . n A 1 30 ASP 30 56 56 ASP ASP A . n A 1 31 ASP 31 57 57 ASP ASP A . n A 1 32 VAL 32 58 58 VAL VAL A . n A 1 33 VAL 33 59 59 VAL VAL A . n A 1 34 LEU 34 60 60 LEU LEU A . n A 1 35 VAL 35 61 61 VAL VAL A . n A 1 36 ARG 36 62 62 ARG ARG A . n A 1 37 ASP 37 63 63 ASP ASP A . n A 1 38 MET 38 64 64 MET MET A . n A 1 39 PHE 39 65 65 PHE PHE A . n A 1 40 PRO 40 66 66 PRO PRO A . n A 1 41 LYS 41 67 67 LYS LYS A . n A 1 42 SER 42 68 68 SER SER A . n A 1 43 LYS 43 69 69 LYS LYS A . n A 1 44 MET 44 70 70 MET MET A . n A 1 45 HIS 45 71 71 HIS HIS A . n A 1 46 LEU 46 72 72 LEU LEU A . n A 1 47 LEU 47 73 73 LEU LEU A . n A 1 48 LEU 48 74 74 LEU LEU A . n A 1 49 MET 49 75 75 MET MET A . n A 1 50 THR 50 76 76 THR THR A . n A 1 51 ARG 51 77 77 ARG ARG A . n A 1 52 ASP 52 78 78 ASP ASP A . n A 1 53 PRO 53 79 79 PRO PRO A . n A 1 54 HIS 54 80 80 HIS HIS A . n A 1 55 LEU 55 81 81 LEU LEU A . n A 1 56 THR 56 82 82 THR THR A . n A 1 57 HIS 57 83 83 HIS HIS A . n A 1 58 VAL 58 84 84 VAL VAL A . n A 1 59 HIS 59 85 85 HIS HIS A . n A 1 60 PRO 60 86 86 PRO PRO A . n A 1 61 LEU 61 87 87 LEU LEU A . n A 1 62 GLU 62 88 88 GLU GLU A . n A 1 63 ILE 63 89 89 ILE ILE A . n A 1 64 MET 64 90 90 MET MET A . n A 1 65 MET 65 91 91 MET MET A . n A 1 66 LYS 66 92 92 LYS LYS A . n A 1 67 HIS 67 93 93 HIS HIS A . n A 1 68 ARG 68 94 94 ARG ARG A . n A 1 69 SER 69 95 95 SER SER A . n A 1 70 LEU 70 96 96 LEU LEU A . n A 1 71 VAL 71 97 97 VAL VAL A . n A 1 72 GLU 72 98 98 GLU GLU A . n A 1 73 LYS 73 99 99 LYS LYS A . n A 1 74 LEU 74 100 100 LEU LEU A . n A 1 75 VAL 75 101 101 VAL VAL A . n A 1 76 SER 76 102 102 SER SER A . n A 1 77 TYR 77 103 103 TYR TYR A . n A 1 78 VAL 78 104 104 VAL VAL A . n A 1 79 GLN 79 105 105 GLN GLN A . n A 1 80 GLY 80 106 106 GLY GLY A . n A 1 81 ASP 81 107 107 ASP ASP A . n A 1 82 LEU 82 108 108 LEU LEU A . n A 1 83 SER 83 109 109 SER SER A . n A 1 84 GLY 84 110 110 GLY GLY A . n A 1 85 LEU 85 111 111 LEU LEU A . n A 1 86 ILE 86 112 112 ILE ILE A . n A 1 87 PHE 87 113 113 PHE PHE A . n A 1 88 ASP 88 114 114 ASP ASP A . n A 1 89 GLU 89 115 115 GLU GLU A . n A 1 90 ALA 90 116 116 ALA ALA A . n A 1 91 ARG 91 117 117 ARG ARG A . n A 1 92 ASN 92 118 118 ASN ASN A . n A 1 93 CYS 93 119 119 CYS CYS A . n A 1 94 LEU 94 120 120 LEU LEU A . n A 1 95 SER 95 121 121 SER SER A . n A 1 96 GLN 96 122 122 GLN GLN A . n A 1 97 GLN 97 123 123 GLN GLN A . n A 1 98 LEU 98 124 124 LEU LEU A . n A 1 99 THR 99 125 125 THR THR A . n A 1 100 ASN 100 126 126 ASN ASN A . n A 1 101 GLU 101 127 127 GLU GLU A . n A 1 102 ALA 102 128 128 ALA ALA A . n A 1 103 LEU 103 129 129 LEU LEU A . n A 1 104 CYS 104 130 130 CYS CYS A . n A 1 105 ASN 105 131 131 ASN ASN A . n A 1 106 TYR 106 132 132 TYR TYR A . n A 1 107 ILE 107 133 133 ILE ILE A . n A 1 108 LYS 108 134 134 LYS LYS A . n A 1 109 VAL 109 135 135 VAL VAL A . n A 1 110 GLY 110 136 136 GLY GLY A . n A 1 111 PHE 111 137 137 PHE PHE A . n A 1 112 HIS 112 138 138 HIS HIS A . n A 1 113 ALA 113 139 139 ALA ALA A . n A 1 114 GLY 114 140 140 GLY GLY A . n A 1 115 PRO 115 141 141 PRO PRO A . n A 1 116 SER 116 142 142 SER SER A . n A 1 117 MET 117 143 143 MET MET A . n A 1 118 ASN 118 144 144 ASN ASN A . n A 1 119 ASN 119 145 145 ASN ASN A . n A 1 120 LEU 120 146 146 LEU LEU A . n A 1 121 HIS 121 147 147 HIS HIS A . n A 1 122 LEU 122 148 148 LEU LEU A . n A 1 123 HIS 123 149 149 HIS HIS A . n A 1 124 ILE 124 150 150 ILE ILE A . n A 1 125 MET 125 151 151 MET MET A . n A 1 126 THR 126 152 152 THR THR A . n A 1 127 LEU 127 153 153 LEU LEU A . n A 1 128 ASP 128 154 154 ASP ASP A . n A 1 129 HIS 129 155 155 HIS HIS A . n A 1 130 VAL 130 156 156 VAL VAL A . n A 1 131 SER 131 157 157 SER SER A . n A 1 132 PRO 132 158 158 PRO PRO A . n A 1 133 SER 133 159 159 SER SER A . n A 1 134 LEU 134 160 160 LEU LEU A . n A 1 135 LYS 135 161 161 LYS LYS A . n A 1 136 ASN 136 162 162 ASN ASN A . n A 1 137 SER 137 163 163 SER SER A . n A 1 138 ALA 138 164 164 ALA ALA A . n A 1 139 HIS 139 165 165 HIS HIS A . n A 1 140 TYR 140 166 166 TYR TYR A . n A 1 141 ILE 141 167 167 ILE ILE A . n A 1 142 SER 142 168 168 SER SER A . n A 1 143 PHE 143 169 169 PHE PHE A . n A 1 144 THR 144 170 170 THR THR A . n A 1 145 SER 145 171 171 SER SER A . n A 1 146 PRO 146 172 172 PRO PRO A . n A 1 147 PHE 147 173 173 PHE PHE A . n A 1 148 PHE 148 174 174 PHE PHE A . n A 1 149 VAL 149 175 175 VAL VAL A . n A 1 150 LYS 150 176 176 LYS LYS A . n A 1 151 ILE 151 177 177 ILE ILE A . n A 1 152 ASP 152 178 178 ASP ASP A . n A 1 153 THR 153 179 179 THR THR A . n A 1 154 PRO 154 180 180 PRO PRO A . n A 1 155 THR 155 181 181 THR THR A . n A 1 156 SER 156 182 182 SER SER A . n A 1 157 ASN 157 183 183 ASN ASN A . n A 1 158 LEU 158 184 184 LEU LEU A . n A 1 159 PRO 159 185 185 PRO PRO A . n A 1 160 THR 160 186 186 THR THR A . n A 1 161 ARG 161 187 187 ARG ARG A . n A 1 162 GLY 162 188 188 GLY GLY A . n A 1 163 THR 163 189 189 THR THR A . n A 1 164 LEU 164 190 190 LEU LEU A . n A 1 165 THR 165 191 191 THR THR A . n A 1 166 SER 166 192 192 SER SER A . n A 1 167 LEU 167 193 193 LEU LEU A . n A 1 168 PHE 168 194 194 PHE PHE A . n A 1 169 GLN 169 195 195 GLN GLN A . n A 1 170 GLU 170 196 196 GLU GLU A . n A 1 171 ASP 171 197 197 ASP ASP A . n A 1 172 LEU 172 198 198 LEU LEU A . n A 1 173 LYS 173 199 199 LYS LYS A . n A 1 174 CYS 174 200 200 CYS CYS A . n A 1 175 TRP 175 201 201 TRP TRP A . n A 1 176 ARG 176 202 202 ARG ARG A . n A 1 177 CYS 177 203 203 CYS CYS A . n A 1 178 GLY 178 204 204 GLY GLY A . n A 1 179 GLU 179 205 205 GLU GLU A . n A 1 180 THR 180 206 206 THR THR A . n A 1 181 PHE 181 207 207 PHE PHE A . n A 1 182 GLY 182 208 208 GLY GLY A . n A 1 183 ARG 183 209 209 ARG ARG A . n A 1 184 HIS 184 210 210 HIS HIS A . n A 1 185 PHE 185 211 211 PHE PHE A . n A 1 186 THR 186 212 212 THR THR A . n A 1 187 LYS 187 213 213 LYS LYS A . n A 1 188 LEU 188 214 214 LEU LEU A . n A 1 189 LYS 189 215 215 LYS LYS A . n A 1 190 ALA 190 216 216 ALA ALA A . n A 1 191 HIS 191 217 217 HIS HIS A . n A 1 192 LEU 192 218 218 LEU LEU A . n A 1 193 GLN 193 219 219 GLN GLN A . n A 1 194 GLU 194 220 220 GLU GLU A . n A 1 195 GLU 195 221 221 GLU GLU A . n A 1 196 TYR 196 222 222 TYR TYR A . n A 1 197 ASP 197 223 223 ASP ASP A . n A 1 198 ASP 198 224 224 ASP ASP A . n A 1 199 TRP 199 225 225 TRP TRP A . n A 1 200 LEU 200 226 226 LEU LEU A . n A 1 201 ASP 201 227 227 ASP ASP A . n A 1 202 LYS 202 228 228 LYS LYS A . n A 1 203 SER 203 229 229 SER SER A . n A 1 204 VAL 204 230 230 VAL VAL A . n A 1 205 SER 205 231 231 SER SER A . n A 1 206 MET 206 232 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DG 5 5 5 DG DG B . n C 3 1 DT 1 1 ? ? ? C . n C 3 2 DA 2 2 ? ? ? C . n C 3 3 DT 3 3 ? ? ? C . n C 3 4 DC 4 4 ? ? ? C . n C 3 5 DG 5 5 ? ? ? C . n C 3 6 DG 6 6 ? ? ? C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DA 8 8 8 DA DA C . n C 3 9 DT 9 9 9 DT DT C . n C 3 10 DC 10 10 10 DC DC C . n C 3 11 DA 11 11 11 DA DA C . n C 3 12 DG 12 12 12 DG DG C . n C 3 13 DG 13 13 13 DG DG C . n C 3 14 DG 14 14 14 DG DG C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 157.0500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 8 ? H HOH . 2 1 A HOH 261 ? H HOH . 3 1 A HOH 283 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 195 ? A GLU 221 ? 1_555 ZN ? G ZN . ? A ZN 4 ? 1_555 NE2 ? A HIS 191 ? A HIS 217 ? 1_555 105.7 ? 2 OE2 ? A GLU 195 ? A GLU 221 ? 1_555 ZN ? G ZN . ? A ZN 4 ? 1_555 SG ? A CYS 174 ? A CYS 200 ? 1_555 114.0 ? 3 NE2 ? A HIS 191 ? A HIS 217 ? 1_555 ZN ? G ZN . ? A ZN 4 ? 1_555 SG ? A CYS 174 ? A CYS 200 ? 1_555 112.5 ? 4 OE2 ? A GLU 195 ? A GLU 221 ? 1_555 ZN ? G ZN . ? A ZN 4 ? 1_555 SG ? A CYS 177 ? A CYS 203 ? 1_555 103.9 ? 5 NE2 ? A HIS 191 ? A HIS 217 ? 1_555 ZN ? G ZN . ? A ZN 4 ? 1_555 SG ? A CYS 177 ? A CYS 203 ? 1_555 105.4 ? 6 SG ? A CYS 174 ? A CYS 200 ? 1_555 ZN ? G ZN . ? A ZN 4 ? 1_555 SG ? A CYS 177 ? A CYS 203 ? 1_555 114.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-12 2 'Structure model' 1 1 2011-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.04 108.30 2.74 0.30 N 2 1 "C3'" C DC 10 ? ? "C2'" C DC 10 ? ? "C1'" C DC 10 ? ? 96.49 102.40 -5.91 0.80 N 3 1 "O4'" C DC 10 ? ? "C1'" C DC 10 ? ? N1 C DC 10 ? ? 111.04 108.30 2.74 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 120 ? ? -109.52 -83.99 2 1 SER A 157 ? ? -171.32 137.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 32 ? CG ? A GLN 6 CG 2 1 Y 1 A GLN 32 ? CD ? A GLN 6 CD 3 1 Y 1 A GLN 32 ? OE1 ? A GLN 6 OE1 4 1 Y 1 A GLN 32 ? NE2 ? A GLN 6 NE2 5 1 Y 1 A LYS 49 ? CD ? A LYS 23 CD 6 1 Y 1 A LYS 49 ? CE ? A LYS 23 CE 7 1 Y 1 A LYS 49 ? NZ ? A LYS 23 NZ 8 1 Y 1 A LYS 213 ? CD ? A LYS 187 CD 9 1 Y 1 A LYS 213 ? CE ? A LYS 187 CE 10 1 Y 1 A LYS 213 ? NZ ? A LYS 187 NZ 11 1 Y 1 A SER 231 ? CA ? A SER 205 CA 12 1 Y 1 A SER 231 ? C ? A SER 205 C 13 1 Y 1 A SER 231 ? O ? A SER 205 O 14 1 Y 1 A SER 231 ? CB ? A SER 205 CB 15 1 Y 1 A SER 231 ? OG ? A SER 205 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 27 ? A GLY 1 2 1 Y 1 A SER 28 ? A SER 2 3 1 Y 1 A HIS 29 ? A HIS 3 4 1 Y 1 A MET 30 ? A MET 4 5 1 Y 1 A LYS 31 ? A LYS 5 6 1 Y 1 A MET 232 ? A MET 206 7 1 Y 1 C DT 1 ? C DT 1 8 1 Y 1 C DA 2 ? C DA 2 9 1 Y 1 C DT 3 ? C DT 3 10 1 Y 1 C DC 4 ? C DC 4 11 1 Y 1 C DG 5 ? C DG 5 12 1 Y 1 C DG 6 ? C DG 6 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SZQ 'double helix' 3SZQ 'b-form double helix' 3SZQ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 14 1_555 0.072 -0.211 0.259 -16.175 -12.462 0.764 1 B_DC1:DG14_C B 1 ? C 14 ? 19 1 1 B DC 2 1_555 C DG 13 1_555 -0.838 -0.135 0.020 -12.010 -4.824 3.130 2 B_DC2:DG13_C B 2 ? C 13 ? 19 1 1 B DC 3 1_555 C DG 12 1_555 0.005 -0.129 -0.035 -4.009 -10.603 3.378 3 B_DC3:DG12_C B 3 ? C 12 ? 19 1 1 B DT 4 1_555 C DA 11 1_555 -0.114 -0.135 -0.030 5.312 -6.986 0.059 4 B_DT4:DA11_C B 4 ? C 11 ? 20 1 1 B DG 5 1_555 C DC 10 1_555 0.794 -0.279 0.409 3.158 -9.687 -9.631 5 B_DG5:DC10_C B 5 ? C 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 14 1_555 B DC 2 1_555 C DG 13 1_555 0.568 -0.857 3.133 4.659 10.335 26.422 -3.882 -0.174 2.675 21.401 -9.647 28.711 1 BB_DC1DC2:DG13DG14_CC B 1 ? C 14 ? B 2 ? C 13 ? 1 B DC 2 1_555 C DG 13 1_555 B DC 3 1_555 C DG 12 1_555 -0.038 -0.117 3.172 1.930 8.591 35.266 -1.348 0.321 3.054 13.913 -3.126 36.315 2 BB_DC2DC3:DG12DG13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DC 3 1_555 C DG 12 1_555 B DT 4 1_555 C DA 11 1_555 -0.221 -0.173 3.087 1.361 -0.204 32.698 -0.274 0.614 3.077 -0.362 -2.416 32.726 3 BB_DC3DT4:DA11DG12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DT 4 1_555 C DA 11 1_555 B DG 5 1_555 C DC 10 1_555 0.556 0.283 3.332 0.209 3.678 40.295 -0.013 -0.780 3.346 5.325 -0.302 40.456 4 BB_DT4DG5:DC10DA11_CC B 4 ? C 11 ? B 5 ? C 10 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ADENOSINE MONOPHOSPHATE' AMP 5 BETA-MERCAPTOETHANOL BME 6 'ZINC ION' ZN 7 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AMP 1 1 1 AMP AMP A . E 5 BME 1 2 2 BME BME A . F 5 BME 1 3 3 BME BME A . G 6 ZN 1 4 4 ZN ZN A . H 7 HOH 1 5 5 HOH HOH A . H 7 HOH 2 6 6 HOH HOH A . H 7 HOH 3 7 7 HOH HOH A . H 7 HOH 4 8 8 HOH HOH A . H 7 HOH 5 9 9 HOH HOH A . H 7 HOH 6 10 10 HOH HOH A . H 7 HOH 7 11 11 HOH HOH A . H 7 HOH 8 12 12 HOH HOH A . H 7 HOH 9 13 13 HOH HOH A . H 7 HOH 10 15 15 HOH HOH A . H 7 HOH 11 16 16 HOH HOH A . H 7 HOH 12 17 17 HOH HOH A . H 7 HOH 13 18 18 HOH HOH A . H 7 HOH 14 19 19 HOH HOH A . H 7 HOH 15 21 21 HOH HOH A . H 7 HOH 16 22 22 HOH HOH A . H 7 HOH 17 23 23 HOH HOH A . H 7 HOH 18 24 24 HOH HOH A . H 7 HOH 19 25 25 HOH HOH A . H 7 HOH 20 26 26 HOH HOH A . H 7 HOH 21 233 233 HOH HOH A . H 7 HOH 22 234 234 HOH HOH A . H 7 HOH 23 235 235 HOH HOH A . H 7 HOH 24 236 236 HOH HOH A . H 7 HOH 25 237 237 HOH HOH A . H 7 HOH 26 238 238 HOH HOH A . H 7 HOH 27 239 239 HOH HOH A . H 7 HOH 28 240 240 HOH HOH A . H 7 HOH 29 241 241 HOH HOH A . H 7 HOH 30 242 242 HOH HOH A . H 7 HOH 31 243 243 HOH HOH A . H 7 HOH 32 244 244 HOH HOH A . H 7 HOH 33 245 245 HOH HOH A . H 7 HOH 34 246 246 HOH HOH A . H 7 HOH 35 247 247 HOH HOH A . H 7 HOH 36 248 248 HOH HOH A . H 7 HOH 37 249 249 HOH HOH A . H 7 HOH 38 250 250 HOH HOH A . H 7 HOH 39 251 251 HOH HOH A . H 7 HOH 40 252 252 HOH HOH A . H 7 HOH 41 253 253 HOH HOH A . H 7 HOH 42 254 254 HOH HOH A . H 7 HOH 43 255 255 HOH HOH A . H 7 HOH 44 256 256 HOH HOH A . H 7 HOH 45 257 257 HOH HOH A . H 7 HOH 46 258 258 HOH HOH A . H 7 HOH 47 259 259 HOH HOH A . H 7 HOH 48 260 260 HOH HOH A . H 7 HOH 49 261 261 HOH HOH A . H 7 HOH 50 262 262 HOH HOH A . H 7 HOH 51 263 263 HOH HOH A . H 7 HOH 52 264 264 HOH HOH A . H 7 HOH 53 265 265 HOH HOH A . H 7 HOH 54 266 266 HOH HOH A . H 7 HOH 55 267 267 HOH HOH A . H 7 HOH 56 268 268 HOH HOH A . H 7 HOH 57 269 269 HOH HOH A . H 7 HOH 58 270 270 HOH HOH A . H 7 HOH 59 271 271 HOH HOH A . H 7 HOH 60 272 272 HOH HOH A . H 7 HOH 61 273 273 HOH HOH A . H 7 HOH 62 274 274 HOH HOH A . H 7 HOH 63 275 275 HOH HOH A . H 7 HOH 64 276 276 HOH HOH A . H 7 HOH 65 277 277 HOH HOH A . H 7 HOH 66 278 278 HOH HOH A . H 7 HOH 67 279 279 HOH HOH A . H 7 HOH 68 280 280 HOH HOH A . H 7 HOH 69 281 281 HOH HOH A . H 7 HOH 70 282 282 HOH HOH A . H 7 HOH 71 283 283 HOH HOH A . H 7 HOH 72 284 284 HOH HOH A . H 7 HOH 73 285 285 HOH HOH A . H 7 HOH 74 286 286 HOH HOH A . H 7 HOH 75 287 287 HOH HOH A . H 7 HOH 76 288 288 HOH HOH A . H 7 HOH 77 289 289 HOH HOH A . H 7 HOH 78 290 290 HOH HOH A . H 7 HOH 79 291 291 HOH HOH A . H 7 HOH 80 292 292 HOH HOH A . H 7 HOH 81 293 293 HOH HOH A . H 7 HOH 82 294 294 HOH HOH A . H 7 HOH 83 295 295 HOH HOH A . H 7 HOH 84 296 296 HOH HOH A . H 7 HOH 85 297 297 HOH HOH A . H 7 HOH 86 298 298 HOH HOH A . H 7 HOH 87 299 299 HOH HOH A . H 7 HOH 88 300 300 HOH HOH A . H 7 HOH 89 301 301 HOH HOH A . H 7 HOH 90 302 302 HOH HOH A . H 7 HOH 91 303 303 HOH HOH A . H 7 HOH 92 304 304 HOH HOH A . H 7 HOH 93 305 305 HOH HOH A . H 7 HOH 94 306 306 HOH HOH A . H 7 HOH 95 307 307 HOH HOH A . H 7 HOH 96 308 308 HOH HOH A . H 7 HOH 97 309 309 HOH HOH A . H 7 HOH 98 310 310 HOH HOH A . H 7 HOH 99 311 311 HOH HOH A . H 7 HOH 100 312 312 HOH HOH A . H 7 HOH 101 313 313 HOH HOH A . H 7 HOH 102 314 314 HOH HOH A . H 7 HOH 103 315 315 HOH HOH A . H 7 HOH 104 316 316 HOH HOH A . H 7 HOH 105 317 317 HOH HOH A . H 7 HOH 106 318 318 HOH HOH A . H 7 HOH 107 319 319 HOH HOH A . H 7 HOH 108 320 320 HOH HOH A . H 7 HOH 109 321 321 HOH HOH A . H 7 HOH 110 322 322 HOH HOH A . H 7 HOH 111 323 323 HOH HOH A . H 7 HOH 112 324 324 HOH HOH A . H 7 HOH 113 325 325 HOH HOH A . H 7 HOH 114 326 326 HOH HOH A . H 7 HOH 115 327 327 HOH HOH A . H 7 HOH 116 328 328 HOH HOH A . H 7 HOH 117 329 329 HOH HOH A . H 7 HOH 118 330 330 HOH HOH A . H 7 HOH 119 331 331 HOH HOH A . H 7 HOH 120 332 332 HOH HOH A . H 7 HOH 121 333 333 HOH HOH A . H 7 HOH 122 334 334 HOH HOH A . H 7 HOH 123 335 335 HOH HOH A . H 7 HOH 124 336 336 HOH HOH A . H 7 HOH 125 337 337 HOH HOH A . H 7 HOH 126 338 338 HOH HOH A . H 7 HOH 127 339 339 HOH HOH A . H 7 HOH 128 340 340 HOH HOH A . H 7 HOH 129 341 341 HOH HOH A . H 7 HOH 130 342 342 HOH HOH A . H 7 HOH 131 343 343 HOH HOH A . H 7 HOH 132 344 344 HOH HOH A . H 7 HOH 133 345 345 HOH HOH A . H 7 HOH 134 346 346 HOH HOH A . H 7 HOH 135 347 347 HOH HOH A . H 7 HOH 136 348 348 HOH HOH A . H 7 HOH 137 349 349 HOH HOH A . H 7 HOH 138 350 350 HOH HOH A . H 7 HOH 139 351 351 HOH HOH A . H 7 HOH 140 352 352 HOH HOH A . H 7 HOH 141 353 353 HOH HOH A . H 7 HOH 142 354 354 HOH HOH A . H 7 HOH 143 355 355 HOH HOH A . H 7 HOH 144 356 356 HOH HOH A . H 7 HOH 145 357 357 HOH HOH A . H 7 HOH 146 358 358 HOH HOH A . H 7 HOH 147 359 359 HOH HOH A . H 7 HOH 148 360 360 HOH HOH A . H 7 HOH 149 361 361 HOH HOH A . H 7 HOH 150 362 362 HOH HOH A . H 7 HOH 151 363 363 HOH HOH A . H 7 HOH 152 364 364 HOH HOH A . H 7 HOH 153 365 365 HOH HOH A . H 7 HOH 154 366 366 HOH HOH A . H 7 HOH 155 367 367 HOH HOH A . H 7 HOH 156 368 368 HOH HOH A . H 7 HOH 157 369 369 HOH HOH A . H 7 HOH 158 370 370 HOH HOH A . H 7 HOH 159 371 371 HOH HOH A . H 7 HOH 160 372 372 HOH HOH A . H 7 HOH 161 373 373 HOH HOH A . H 7 HOH 162 374 374 HOH HOH A . H 7 HOH 163 375 375 HOH HOH A . H 7 HOH 164 376 376 HOH HOH A . H 7 HOH 165 377 377 HOH HOH A . H 7 HOH 166 378 378 HOH HOH A . H 7 HOH 167 379 379 HOH HOH A . H 7 HOH 168 380 380 HOH HOH A . H 7 HOH 169 381 381 HOH HOH A . H 7 HOH 170 382 382 HOH HOH A . H 7 HOH 171 383 383 HOH HOH A . H 7 HOH 172 384 384 HOH HOH A . H 7 HOH 173 385 385 HOH HOH A . H 7 HOH 174 386 386 HOH HOH A . H 7 HOH 175 387 387 HOH HOH A . H 7 HOH 176 388 388 HOH HOH A . H 7 HOH 177 389 389 HOH HOH A . H 7 HOH 178 390 390 HOH HOH A . H 7 HOH 179 391 391 HOH HOH A . H 7 HOH 180 392 392 HOH HOH A . H 7 HOH 181 393 393 HOH HOH A . H 7 HOH 182 394 394 HOH HOH A . H 7 HOH 183 395 395 HOH HOH A . H 7 HOH 184 396 396 HOH HOH A . H 7 HOH 185 397 397 HOH HOH A . H 7 HOH 186 398 398 HOH HOH A . H 7 HOH 187 399 399 HOH HOH A . H 7 HOH 188 400 400 HOH HOH A . H 7 HOH 189 401 401 HOH HOH A . H 7 HOH 190 402 402 HOH HOH A . H 7 HOH 191 403 403 HOH HOH A . H 7 HOH 192 404 404 HOH HOH A . H 7 HOH 193 405 405 HOH HOH A . H 7 HOH 194 406 406 HOH HOH A . H 7 HOH 195 407 407 HOH HOH A . H 7 HOH 196 408 408 HOH HOH A . H 7 HOH 197 409 409 HOH HOH A . H 7 HOH 198 410 410 HOH HOH A . H 7 HOH 199 411 411 HOH HOH A . H 7 HOH 200 412 412 HOH HOH A . H 7 HOH 201 413 413 HOH HOH A . I 7 HOH 1 20 20 HOH HOH B . I 7 HOH 2 56 56 HOH HOH B . I 7 HOH 3 57 57 HOH HOH B . I 7 HOH 4 60 60 HOH HOH B . I 7 HOH 5 152 152 HOH HOH B . I 7 HOH 6 187 187 HOH HOH B . J 7 HOH 1 166 166 HOH HOH C . J 7 HOH 2 169 169 HOH HOH C . J 7 HOH 3 192 192 HOH HOH C . J 7 HOH 4 223 223 HOH HOH C . #