HEADER OXIDOREDUCTASE 19-JUL-11 3SZW TITLE CRYSTAL STRUCTURE OF SULFIDE:QUINONE OXIDOREDUCTASE CYS128SER VARIANT TITLE 2 FROM ACIDITHIOBACILLUS FERROOXIDANS IN COMPLEX WITH DECYLUBIQUINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIDE-QUINONE REDUCTASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_TAXID: 243159; SOURCE 4 STRAIN: ATCC 23270 / DSM 14882 / NCIB 8455; SOURCE 5 GENE: AFE_1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFIDE:QUINONE OXIDOREDUCTASE, CYS128SER VARIANT, INTEGRAL MONOTOPIC KEYWDS 2 MEMBRANE PROTEIN, COMPLEX WITH DECYLUBIQUINONE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.CHERNEY,Y.ZHANG,M.N.G.JAMES,J.H.WEINER REVDAT 4 13-SEP-23 3SZW 1 REMARK SEQADV LINK REVDAT 3 07-MAY-14 3SZW 1 REMARK REVDAT 2 13-JUN-12 3SZW 1 JRNL REVDAT 1 16-MAY-12 3SZW 0 JRNL AUTH M.M.CHERNEY,Y.ZHANG,M.N.JAMES,J.H.WEINER JRNL TITL STRUCTURE-ACTIVITY CHARACTERIZATION OF SULFIDE:QUINONE JRNL TITL 2 OXIDOREDUCTASE VARIANTS. JRNL REF J.STRUCT.BIOL. V. 178 319 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22542586 JRNL DOI 10.1016/J.JSB.2012.04.007 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.7610 - 5.8677 1.00 2628 111 0.1744 0.1910 REMARK 3 2 5.8677 - 4.6584 1.00 2600 147 0.1284 0.1544 REMARK 3 3 4.6584 - 4.0698 1.00 2620 114 0.1107 0.1664 REMARK 3 4 4.0698 - 3.6978 1.00 2546 178 0.1425 0.2044 REMARK 3 5 3.6978 - 3.4329 1.00 2617 153 0.1619 0.2150 REMARK 3 6 3.4329 - 3.2305 1.00 2584 137 0.1604 0.2149 REMARK 3 7 3.2305 - 3.0687 1.00 2589 134 0.1724 0.2191 REMARK 3 8 3.0687 - 2.9352 1.00 2594 148 0.1740 0.2520 REMARK 3 9 2.9352 - 2.8222 1.00 2577 147 0.1731 0.2494 REMARK 3 10 2.8222 - 2.7248 1.00 2595 147 0.1743 0.2114 REMARK 3 11 2.7248 - 2.6396 1.00 2586 149 0.1851 0.2308 REMARK 3 12 2.6396 - 2.5642 1.00 2593 139 0.1931 0.2945 REMARK 3 13 2.5642 - 2.4967 1.00 2627 110 0.1999 0.2499 REMARK 3 14 2.4967 - 2.4357 1.00 2575 140 0.2062 0.2694 REMARK 3 15 2.4357 - 2.3804 1.00 2610 138 0.2058 0.2397 REMARK 3 16 2.3804 - 2.3297 1.00 2581 132 0.2259 0.2655 REMARK 3 17 2.3297 - 2.2831 1.00 2619 135 0.2141 0.2848 REMARK 3 18 2.2831 - 2.2400 1.00 2607 111 0.2628 0.2845 REMARK 3 19 2.2400 - 2.2000 1.00 2604 149 0.2832 0.3696 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.54510 REMARK 3 B22 (A**2) : -4.54510 REMARK 3 B33 (A**2) : 9.09030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3438 REMARK 3 ANGLE : 1.109 4661 REMARK 3 CHIRALITY : 0.069 495 REMARK 3 PLANARITY : 0.008 587 REMARK 3 DIHEDRAL : 16.401 1291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 1:161) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6246 -26.7171 12.2596 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.2521 REMARK 3 T33: 0.1741 T12: -0.0484 REMARK 3 T13: 0.0258 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 1.9962 L22: 1.1056 REMARK 3 L33: 0.5978 L12: 0.2988 REMARK 3 L13: -0.2552 L23: -0.2467 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.1567 S13: -0.1686 REMARK 3 S21: 0.2118 S22: 0.0111 S23: 0.0976 REMARK 3 S31: 0.0669 S32: -0.2284 S33: -0.0139 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 162:232) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5030 -17.2126 6.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1723 REMARK 3 T33: 0.3374 T12: -0.0430 REMARK 3 T13: -0.0346 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.6594 L22: 1.9287 REMARK 3 L33: 1.7605 L12: -0.2358 REMARK 3 L13: -0.1185 L23: -0.4745 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: -0.1839 S13: -0.0009 REMARK 3 S21: 0.1592 S22: -0.0614 S23: -0.5293 REMARK 3 S31: -0.1283 S32: 0.1834 S33: -0.0135 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 233:341) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7029 -25.7392 -2.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.2028 REMARK 3 T33: 0.1116 T12: -0.0402 REMARK 3 T13: 0.0109 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.6239 L22: 1.4738 REMARK 3 L33: 0.8161 L12: 0.4035 REMARK 3 L13: -0.0592 L23: -0.3558 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.2792 S13: -0.1076 REMARK 3 S21: -0.1190 S22: 0.0425 S23: -0.0453 REMARK 3 S31: 0.1839 S32: -0.1587 S33: -0.0448 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 342:377) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7074 -10.2752 -1.8365 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2325 REMARK 3 T33: 0.1875 T12: -0.0153 REMARK 3 T13: 0.0508 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.5335 L22: 2.5562 REMARK 3 L33: 1.4538 L12: 0.4952 REMARK 3 L13: 0.1049 L23: -0.0887 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.0282 S13: 0.0874 REMARK 3 S21: -0.1472 S22: 0.1301 S23: 0.1470 REMARK 3 S31: 0.0398 S32: -0.3849 S33: -0.0749 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 378:410) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1242 -7.2092 11.6666 REMARK 3 T TENSOR REMARK 3 T11: 0.2707 T22: 0.2795 REMARK 3 T33: 0.2625 T12: 0.0416 REMARK 3 T13: 0.0638 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.2638 L22: 2.0573 REMARK 3 L33: 2.4598 L12: 1.6207 REMARK 3 L13: -2.2795 L23: -1.6335 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0547 S13: 0.3950 REMARK 3 S21: 0.3978 S22: 0.1585 S23: 0.3597 REMARK 3 S31: -0.0265 S32: -0.3731 S33: -0.1875 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3SZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.60 REMARK 200 R MERGE FOR SHELL (I) : 1.11300 REMARK 200 R SYM FOR SHELL (I) : 1.11300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: PDB ENTRY 3T31 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 600, 0.1 M BIS-TRIS BUFFER,0.1 REMARK 280 M MGSO4, 0.05% DDM, 5 MM DECYLUBIQUINONE, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.25733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.12867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.25733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.12867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.25733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.12867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.25733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.12867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 GLY A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 ARG A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 THR A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 LYS A 432 REMARK 465 ALA A 433 REMARK 465 SER A 434 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 763 O HOH A 789 2.19 REMARK 500 OE1 GLU A 341 NH2 ARG A 343 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 871 O HOH A 871 11655 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 1 59.66 -149.95 REMARK 500 ALA A 9 62.46 -107.39 REMARK 500 PRO A 371 -153.46 -78.73 REMARK 500 GLU A 408 136.81 -176.04 REMARK 500 PRO A 409 79.65 -69.09 REMARK 500 PHE A 410 -73.95 -41.60 REMARK 500 TYR A 411 83.95 -69.22 REMARK 500 LEU A 415 2.53 -68.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCQ A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KPG RELATED DB: PDB REMARK 900 RELATED ID: 3KPI RELATED DB: PDB REMARK 900 RELATED ID: 3KPK RELATED DB: PDB REMARK 900 RELATED ID: 3HYV RELATED DB: PDB REMARK 900 RELATED ID: 3HYW RELATED DB: PDB REMARK 900 RELATED ID: 3HYX RELATED DB: PDB REMARK 900 RELATED ID: 3SX6 RELATED DB: PDB REMARK 900 RELATED ID: 3SXI RELATED DB: PDB REMARK 900 RELATED ID: 3SY4 RELATED DB: PDB REMARK 900 RELATED ID: 3SYI RELATED DB: PDB REMARK 900 RELATED ID: 3SZ0 RELATED DB: PDB REMARK 900 RELATED ID: 3SZC RELATED DB: PDB REMARK 900 RELATED ID: 3SZF RELATED DB: PDB REMARK 900 RELATED ID: 3T0K RELATED DB: PDB REMARK 900 RELATED ID: 3T14 RELATED DB: PDB REMARK 900 RELATED ID: 3T2K RELATED DB: PDB REMARK 900 RELATED ID: 3T2Y RELATED DB: PDB REMARK 900 RELATED ID: 3T2Z RELATED DB: PDB REMARK 900 RELATED ID: 3T31 RELATED DB: PDB DBREF 3SZW A 2 434 UNP B7JBP8 B7JBP8_ACIF2 2 434 SEQADV 3SZW MET A -2 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZW ARG A -1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZW GLY A 0 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZW SER A 1 UNP B7JBP8 EXPRESSION TAG SEQADV 3SZW SER A 128 UNP B7JBP8 CYS 128 ENGINEERED MUTATION SEQRES 1 A 437 MET ARG GLY SER ALA HIS VAL VAL ILE LEU GLY ALA GLY SEQRES 2 A 437 THR GLY GLY MET PRO ALA ALA TYR GLU MET LYS GLU ALA SEQRES 3 A 437 LEU GLY SER GLY HIS GLU VAL THR LEU ILE SER ALA ASN SEQRES 4 A 437 ASP TYR PHE GLN PHE VAL PRO SER ASN PRO TRP VAL GLY SEQRES 5 A 437 VAL GLY TRP LYS GLU ARG ASP ASP ILE ALA PHE PRO ILE SEQRES 6 A 437 ARG HIS TYR VAL GLU ARG LYS GLY ILE HIS PHE ILE ALA SEQRES 7 A 437 GLN SER ALA GLU GLN ILE ASP ALA GLU ALA GLN ASN ILE SEQRES 8 A 437 THR LEU ALA ASP GLY ASN THR VAL HIS TYR ASP TYR LEU SEQRES 9 A 437 MET ILE ALA THR GLY PRO LYS LEU ALA PHE GLU ASN VAL SEQRES 10 A 437 PRO GLY SER ASP PRO HIS GLU GLY PRO VAL GLN SER ILE SEQRES 11 A 437 SER THR VAL ASP HIS ALA GLU ARG ALA PHE ALA GLU TYR SEQRES 12 A 437 GLN ALA LEU LEU ARG GLU PRO GLY PRO ILE VAL ILE GLY SEQRES 13 A 437 ALA MET ALA GLY ALA SER CYS PHE GLY PRO ALA TYR GLU SEQRES 14 A 437 TYR ALA MET ILE VAL ALA SER ASP LEU LYS LYS ARG GLY SEQRES 15 A 437 MET ARG ASP LYS ILE PRO SER PHE THR PHE ILE THR SER SEQRES 16 A 437 GLU PRO TYR ILE GLY HIS LEU GLY ILE GLN GLY VAL GLY SEQRES 17 A 437 ASP SER LYS GLY ILE LEU THR LYS GLY LEU LYS GLU GLU SEQRES 18 A 437 GLY ILE GLU ALA TYR THR ASN CYS LYS VAL THR LYS VAL SEQRES 19 A 437 GLU ASP ASN LYS MET TYR VAL THR GLN VAL ASP GLU LYS SEQRES 20 A 437 GLY GLU THR ILE LYS GLU MET VAL LEU PRO VAL LYS PHE SEQRES 21 A 437 GLY MET MET ILE PRO ALA PHE LYS GLY VAL PRO ALA VAL SEQRES 22 A 437 ALA GLY VAL GLU GLY LEU CYS ASN PRO GLY GLY PHE VAL SEQRES 23 A 437 LEU VAL ASP GLU HIS GLN ARG SER LYS LYS TYR ALA ASN SEQRES 24 A 437 ILE PHE ALA ALA GLY ILE ALA ILE ALA ILE PRO PRO VAL SEQRES 25 A 437 GLU THR THR PRO VAL PRO THR GLY ALA PRO LYS THR GLY SEQRES 26 A 437 TYR MET ILE GLU SER MET VAL SER ALA ALA VAL HIS ASN SEQRES 27 A 437 ILE LYS ALA ASP LEU GLU GLY ARG LYS GLY GLU GLN THR SEQRES 28 A 437 MET GLY THR TRP ASN ALA VAL CYS PHE ALA ASP MET GLY SEQRES 29 A 437 ASP ARG GLY ALA ALA PHE ILE ALA LEU PRO GLN LEU LYS SEQRES 30 A 437 PRO ARG LYS VAL ASP VAL PHE ALA TYR GLY ARG TRP VAL SEQRES 31 A 437 HIS LEU ALA LYS VAL ALA PHE GLU LYS TYR PHE ILE ARG SEQRES 32 A 437 LYS MET LYS MET GLY VAL SER GLU PRO PHE TYR GLU LYS SEQRES 33 A 437 VAL LEU PHE LYS MET MET GLY ILE THR ARG LEU LYS GLU SEQRES 34 A 437 GLU ASP THR HIS ARG LYS ALA SER HET FAD A 500 53 HET LMT A 501 35 HET DCQ A 502 23 HET SO4 A 503 5 HET H2S A 504 1 HET H2S A 505 1 HET H2S A 506 2 HET H2S A 507 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM DCQ 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4- HETNAM 2 DCQ DIONE HETNAM SO4 SULFATE ION HETNAM H2S HYDROSULFURIC ACID HETSYN DCQ DECYLUBIQUINONE HETSYN H2S HYDROGEN SULFIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 LMT C24 H46 O11 FORMUL 4 DCQ C19 H30 O4 FORMUL 5 SO4 O4 S 2- FORMUL 6 H2S 4(H2 S) FORMUL 10 HOH *287(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 SER A 44 VAL A 50 1 7 HELIX 3 3 GLU A 54 ILE A 58 1 5 HELIX 4 4 ILE A 62 ARG A 68 1 7 HELIX 5 5 PHE A 111 VAL A 114 5 4 HELIX 6 6 THR A 129 GLU A 146 1 18 HELIX 7 7 PHE A 161 ARG A 178 1 18 HELIX 8 8 MET A 180 ILE A 184 5 5 HELIX 9 9 ASP A 206 GLU A 218 1 13 HELIX 10 10 VAL A 267 GLY A 272 1 6 HELIX 11 11 GLY A 301 ILE A 304 5 4 HELIX 12 12 THR A 321 GLU A 341 1 21 HELIX 13 13 ARG A 385 GLY A 405 1 21 SHEET 1 A 5 HIS A 72 ILE A 74 0 SHEET 2 A 5 GLU A 29 ILE A 33 1 N LEU A 32 O HIS A 72 SHEET 3 A 5 HIS A 3 LEU A 7 1 N ILE A 6 O THR A 31 SHEET 4 A 5 TYR A 100 ILE A 103 1 O MET A 102 N VAL A 5 SHEET 5 A 5 ILE A 297 ALA A 299 1 O PHE A 298 N ILE A 103 SHEET 1 B 2 TYR A 38 GLN A 40 0 SHEET 2 B 2 ALA A 59 PRO A 61 -1 O PHE A 60 N PHE A 39 SHEET 1 C 3 ALA A 78 ASP A 82 0 SHEET 2 C 3 ASN A 87 LEU A 90 -1 O THR A 89 N GLU A 79 SHEET 3 C 3 THR A 95 HIS A 97 -1 O VAL A 96 N ILE A 88 SHEET 1 D 2 PRO A 107 LEU A 109 0 SHEET 2 D 2 PHE A 264 GLY A 266 -1 O LYS A 265 N LYS A 108 SHEET 1 E 5 VAL A 124 GLN A 125 0 SHEET 2 E 5 PHE A 257 ILE A 261 1 O GLY A 258 N GLN A 125 SHEET 3 E 5 ILE A 150 ALA A 154 1 N GLY A 153 O ILE A 261 SHEET 4 E 5 PHE A 187 THR A 191 1 O THR A 188 N ILE A 150 SHEET 5 E 5 GLU A 221 TYR A 223 1 O GLU A 221 N PHE A 189 SHEET 1 F 3 CYS A 226 GLU A 232 0 SHEET 2 F 3 LYS A 235 VAL A 241 -1 O THR A 239 N LYS A 227 SHEET 3 F 3 THR A 247 PRO A 254 -1 O LYS A 249 N GLN A 240 SHEET 1 G 3 ALA A 354 ASP A 359 0 SHEET 2 G 3 GLY A 364 LEU A 370 -1 O ALA A 365 N ALA A 358 SHEET 3 G 3 VAL A 378 GLY A 384 -1 O ALA A 382 N ALA A 366 LINK SG CYS A 160 S H2S A 507 1555 1555 2.09 LINK SG BCYS A 356 S BH2S A 506 1555 1555 1.99 LINK SG ACYS A 356 S AH2S A 506 1555 1555 2.23 CISPEP 1 LEU A 370 PRO A 371 0 -6.25 CISPEP 2 LYS A 374 PRO A 375 0 0.23 CISPEP 3 SER A 407 GLU A 408 0 -8.63 SITE 1 AC1 42 LEU A 7 GLY A 8 ALA A 9 GLY A 10 SITE 2 AC1 42 THR A 11 GLY A 12 SER A 34 ALA A 35 SITE 3 AC1 42 VAL A 42 PRO A 43 SER A 77 ALA A 78 SITE 4 AC1 42 ALA A 104 THR A 105 GLY A 106 PRO A 107 SITE 5 AC1 42 ILE A 127 SER A 128 PRO A 163 VAL A 267 SITE 6 AC1 42 GLY A 301 ILE A 302 THR A 321 GLY A 322 SITE 7 AC1 42 ILE A 325 VAL A 355 CYS A 356 PHE A 357 SITE 8 AC1 42 LYS A 391 DCQ A 502 H2S A 506 HOH A 601 SITE 9 AC1 42 HOH A 602 HOH A 609 HOH A 610 HOH A 654 SITE 10 AC1 42 HOH A 660 HOH A 702 HOH A 716 HOH A 718 SITE 11 AC1 42 HOH A 740 HOH A 776 SITE 1 AC2 16 GLY A 205 ASP A 206 ILE A 210 GLU A 217 SITE 2 AC2 16 CYS A 356 ALA A 358 ALA A 365 TYR A 383 SITE 3 AC2 16 HOH A 622 HOH A 650 HOH A 710 HOH A 719 SITE 4 AC2 16 HOH A 738 HOH A 742 HOH A 753 HOH A 779 SITE 1 AC3 12 PHE A 41 PRO A 43 GLY A 322 TYR A 323 SITE 2 AC3 12 VAL A 355 PHE A 357 LYS A 391 PHE A 394 SITE 3 AC3 12 TYR A 411 LYS A 417 FAD A 500 HOH A 860 SITE 1 AC4 4 MET A -2 HIS A 3 HIS A 97 HOH A 687 SITE 1 AC5 5 SER A 126 ILE A 127 SER A 128 ILE A 261 SITE 2 AC5 5 PRO A 262 SITE 1 AC6 5 PHE A 161 GLY A 162 CYS A 356 H2S A 506 SITE 2 AC6 5 HOH A 887 SITE 1 AC7 5 THR A 321 VAL A 355 CYS A 356 FAD A 500 SITE 2 AC7 5 H2S A 505 SITE 1 AC8 1 CYS A 160 CRYST1 149.907 149.907 81.386 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006671 0.003851 0.000000 0.00000 SCALE2 0.000000 0.007703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012287 0.00000