data_3SZX # _entry.id 3SZX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3SZX pdb_00003szx 10.2210/pdb3szx/pdb NDB NA1253 ? ? RCSB RCSB066861 ? ? WWPDB D_1000066861 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3SZX _pdbx_database_status.recvd_initial_deposition_date 2011-07-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3SYW _pdbx_database_related.details 'The same CUG repeat RNA with different structure' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, A.' 1 'Park, H.' 2 'Pengfei, F.' 3 'Parkesh, R.' 4 'Guo, M.' 5 'Nettles, K.W.' 6 'Disney, M.D.' 7 # _citation.id primary _citation.title 'Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations' _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 9928 _citation.page_last 9935 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21988728 _citation.pdbx_database_id_DOI 10.1021/bi2013068 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, A.' 1 ? primary 'Park, H.' 2 ? primary 'Fang, P.' 3 ? primary 'Parkesh, R.' 4 ? primary 'Guo, M.' 5 ? primary 'Nettles, K.W.' 6 ? primary 'Disney, M.D.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(P*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') ; 6039.569 2 ? ? ? RNA 2 water nat water 18.015 48 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGGGCCUGCUGCUGGUCC _entity_poly.pdbx_seq_one_letter_code_can UUGGGCCUGCUGCUGGUCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 G n 1 5 G n 1 6 C n 1 7 C n 1 8 U n 1 9 G n 1 10 C n 1 11 U n 1 12 G n 1 13 C n 1 14 U n 1 15 G n 1 16 G n 1 17 U n 1 18 C n 1 19 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details Polyribonucleotide # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n B 1 1 U 1 1 1 U U B . n B 1 2 U 2 2 2 U U B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 C 6 6 6 C C B . n B 1 7 C 7 7 7 C C B . n B 1 8 U 8 8 8 U U B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 U 17 17 17 U U B . n B 1 18 C 18 18 18 C C B . n B 1 19 C 19 19 19 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 20 1 HOH HOH A . C 2 HOH 2 21 21 HOH HOH A . C 2 HOH 3 22 5 HOH HOH A . C 2 HOH 4 23 23 HOH HOH A . C 2 HOH 5 24 6 HOH HOH A . C 2 HOH 6 25 25 HOH HOH A . C 2 HOH 7 26 10 HOH HOH A . C 2 HOH 8 27 27 HOH HOH A . C 2 HOH 9 28 11 HOH HOH A . C 2 HOH 10 29 29 HOH HOH A . C 2 HOH 11 30 30 HOH HOH A . C 2 HOH 12 31 12 HOH HOH A . C 2 HOH 13 32 13 HOH HOH A . C 2 HOH 14 33 33 HOH HOH A . C 2 HOH 15 34 34 HOH HOH A . C 2 HOH 16 35 35 HOH HOH A . C 2 HOH 17 36 14 HOH HOH A . C 2 HOH 18 37 16 HOH HOH A . C 2 HOH 19 38 38 HOH HOH A . C 2 HOH 20 39 17 HOH HOH A . C 2 HOH 21 41 41 HOH HOH A . C 2 HOH 22 42 42 HOH HOH A . C 2 HOH 23 44 44 HOH HOH A . C 2 HOH 24 45 45 HOH HOH A . C 2 HOH 25 46 46 HOH HOH A . C 2 HOH 26 47 47 HOH HOH A . D 2 HOH 1 20 20 HOH HOH B . D 2 HOH 2 21 2 HOH HOH B . D 2 HOH 3 22 22 HOH HOH B . D 2 HOH 4 23 3 HOH HOH B . D 2 HOH 5 24 24 HOH HOH B . D 2 HOH 6 25 4 HOH HOH B . D 2 HOH 7 26 26 HOH HOH B . D 2 HOH 8 27 7 HOH HOH B . D 2 HOH 9 28 28 HOH HOH B . D 2 HOH 10 29 8 HOH HOH B . D 2 HOH 11 30 9 HOH HOH B . D 2 HOH 12 31 31 HOH HOH B . D 2 HOH 13 32 32 HOH HOH B . D 2 HOH 14 33 15 HOH HOH B . D 2 HOH 15 34 18 HOH HOH B . D 2 HOH 16 35 19 HOH HOH B . D 2 HOH 17 36 36 HOH HOH B . D 2 HOH 18 37 37 HOH HOH B . D 2 HOH 19 39 39 HOH HOH B . D 2 HOH 20 40 40 HOH HOH B . D 2 HOH 21 43 43 HOH HOH B . D 2 HOH 22 48 48 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3SZX _cell.length_a 39.505 _cell.length_b 39.505 _cell.length_c 155.887 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3SZX _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3SZX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '10 mM magnesium sulfate, 50 mM sodium cacodylate, 1.8 M lithium sulfate , pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2011-01-09 _diffrn_detector.details 'Rh coated flat mirror, toroidal focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97855 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97855 # _reflns.entry_id 3SZX _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 33.41 _reflns.d_resolution_high 2.20 _reflns.number_obs 4571 _reflns.number_all 4571 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.76 4.74 99.8 ? ? ? ? ? ? ? ? ? ? 1 1 3.29 3.76 99.5 ? ? ? ? ? ? ? ? ? ? 2 1 2.99 3.29 99.2 ? ? ? ? ? ? ? ? ? ? 3 1 2.77 2.99 99.6 ? ? ? ? ? ? ? ? ? ? 4 1 2.61 2.77 99.8 ? ? ? ? ? ? ? ? ? ? 5 1 2.48 2.61 100.0 ? ? ? ? ? ? ? ? ? ? 6 1 2.37 2.48 100.0 ? ? ? ? ? ? ? ? ? ? 7 1 2.28 2.37 100.0 ? ? ? ? ? ? ? ? ? ? 8 1 2.20 2.28 99.8 ? ? ? ? ? ? ? ? ? ? 9 1 # _refine.entry_id 3SZX _refine.ls_number_reflns_obs 4175 _refine.ls_number_reflns_all 4175 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.13 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.41 _refine.ls_d_res_high 2.204 _refine.ls_percent_reflns_obs 91.12 _refine.ls_R_factor_obs 0.2274 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2223 _refine.ls_R_factor_R_free 0.2708 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.25 _refine.ls_number_reflns_R_free 428 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -5.1983 _refine.aniso_B[2][2] -5.1983 _refine.aniso_B[3][3] 10.3966 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.462 _refine.solvent_model_param_bsol 42.097 _refine.pdbx_solvent_vdw_probe_radii 0.30 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.05 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 35.20 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 802 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 850 _refine_hist.d_res_high 2.204 _refine_hist.d_res_low 33.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.024 ? ? 890 ? 'X-RAY DIFFRACTION' f_angle_d 2.150 ? ? 1382 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 14.533 ? ? 450 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.087 ? ? 190 ? 'X-RAY DIFFRACTION' f_plane_restr 0.013 ? ? 38 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.2043 2.5231 1132 0.2981 84.00 0.3406 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.5231 3.1785 1282 0.2591 93.00 0.3426 . . 150 . . . . 'X-RAY DIFFRACTION' . 3.1785 33.4208 1333 0.1862 96.00 0.2217 . . 144 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3SZX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3SZX _struct.title 'Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3SZX _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'CUG Repeat RNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3SZX _struct_ref.pdbx_db_accession 3SZX _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3SZX A 1 ? 19 ? 3SZX 1 ? 19 ? 1 19 2 1 3SZX B 1 ? 19 ? 3SZX 1 ? 19 ? 1 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1680 ? 1 MORE -17 ? 1 'SSA (A^2)' 7180 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 4 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 4 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 4 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B U 17 O2 ? ? A G 5 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 5 O6 ? ? ? 1_555 B U 17 N3 ? ? A G 5 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 6 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 6 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 6 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 7 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 7 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 7 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 B U 14 O4 ? ? A U 8 B U 14 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 9 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 9 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 9 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 12 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 12 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 12 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 13 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 13 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 13 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 15 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 15 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 15 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 16 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 16 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 16 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 17 N3 ? ? ? 1_555 B G 5 O6 ? ? A U 17 B G 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A U 17 O2 ? ? ? 1_555 B G 5 N1 ? ? A U 17 B G 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A C 18 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 18 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 18 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 18 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 18 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 18 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H21 A G 15 ? ? O2 B C 7 ? ? 1.55 2 1 H21 A G 4 ? ? O2 B C 18 ? ? 1.57 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP2 B U 1 ? ? 1_555 "O3'" B C 19 ? ? 6_555 1.86 2 1 P A U 1 ? ? 1_555 "O3'" A C 19 ? ? 8_544 2.03 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A G 3 ? ? N3 A G 3 ? ? 1.407 1.323 0.084 0.008 N 2 1 C4 A G 3 ? ? C5 A G 3 ? ? 1.435 1.379 0.056 0.007 N 3 1 C5 A G 3 ? ? C6 A G 3 ? ? 1.498 1.419 0.079 0.010 N 4 1 N7 A G 3 ? ? C8 A G 3 ? ? 1.369 1.305 0.064 0.006 N 5 1 N9 A G 3 ? ? C4 A G 3 ? ? 1.426 1.375 0.051 0.008 N 6 1 C6 A G 3 ? ? O6 A G 3 ? ? 1.314 1.237 0.077 0.009 N 7 1 N1 A G 4 ? ? C2 A G 4 ? ? 1.435 1.373 0.062 0.008 N 8 1 C2 A G 4 ? ? N3 A G 4 ? ? 1.383 1.323 0.060 0.008 N 9 1 C6 A G 4 ? ? N1 A G 4 ? ? 1.437 1.391 0.046 0.007 N 10 1 N1 A G 5 ? ? C2 A G 5 ? ? 1.428 1.373 0.055 0.008 N 11 1 N7 A G 5 ? ? C8 A G 5 ? ? 1.356 1.305 0.051 0.006 N 12 1 N9 A G 5 ? ? C4 A G 5 ? ? 1.425 1.375 0.050 0.008 N 13 1 N1 A C 7 ? ? C6 A C 7 ? ? 1.413 1.367 0.046 0.006 N 14 1 C4 A C 7 ? ? C5 A C 7 ? ? 1.474 1.425 0.049 0.008 N 15 1 C5 A C 7 ? ? C6 A C 7 ? ? 1.410 1.339 0.071 0.008 N 16 1 C4 A U 11 ? ? O4 A U 11 ? ? 1.283 1.232 0.051 0.008 N 17 1 N1 A U 11 ? ? C2 A U 11 ? ? 1.457 1.381 0.076 0.009 N 18 1 C6 A G 12 ? ? N1 A G 12 ? ? 1.470 1.391 0.079 0.007 N 19 1 C6 A G 12 ? ? O6 A G 12 ? ? 1.302 1.237 0.065 0.009 N 20 1 N1 A G 15 ? ? C2 A G 15 ? ? 1.441 1.373 0.068 0.008 N 21 1 C6 A G 15 ? ? N1 A G 15 ? ? 1.457 1.391 0.066 0.007 N 22 1 C2 A G 16 ? ? N3 A G 16 ? ? 1.386 1.323 0.063 0.008 N 23 1 C5 A G 16 ? ? N7 A G 16 ? ? 1.428 1.388 0.040 0.006 N 24 1 N9 A G 16 ? ? C4 A G 16 ? ? 1.424 1.375 0.049 0.008 N 25 1 C2 A C 19 ? ? O2 A C 19 ? ? 1.184 1.240 -0.056 0.009 N 26 1 C4 B U 2 ? ? O4 B U 2 ? ? 1.290 1.232 0.058 0.008 N 27 1 N1 B U 2 ? ? C2 B U 2 ? ? 1.443 1.381 0.062 0.009 N 28 1 C5 B U 2 ? ? C6 B U 2 ? ? 1.403 1.337 0.066 0.009 N 29 1 C5 B G 3 ? ? N7 B G 3 ? ? 1.425 1.388 0.037 0.006 N 30 1 N1 B G 5 ? ? C2 B G 5 ? ? 1.440 1.373 0.067 0.008 N 31 1 C5 B U 8 ? ? C6 B U 8 ? ? 1.398 1.337 0.061 0.009 N 32 1 N1 B G 9 ? ? C2 B G 9 ? ? 1.437 1.373 0.064 0.008 N 33 1 C2 B G 9 ? ? N3 B G 9 ? ? 1.404 1.323 0.081 0.008 N 34 1 N3 B G 9 ? ? C4 B G 9 ? ? 1.302 1.350 -0.048 0.007 N 35 1 N1 B C 10 ? ? C6 B C 10 ? ? 1.416 1.367 0.049 0.006 N 36 1 C4 B C 10 ? ? C5 B C 10 ? ? 1.479 1.425 0.054 0.008 N 37 1 C5 B C 10 ? ? C6 B C 10 ? ? 1.391 1.339 0.052 0.008 N 38 1 C2 B U 14 ? ? O2 B U 14 ? ? 1.274 1.219 0.055 0.009 N 39 1 C6 B G 15 ? ? N1 B G 15 ? ? 1.455 1.391 0.064 0.007 N 40 1 "C5'" B G 16 ? ? "C4'" B G 16 ? ? 1.462 1.508 -0.046 0.007 N 41 1 N1 B G 16 ? ? C2 B G 16 ? ? 1.428 1.373 0.055 0.008 N 42 1 C2 B G 16 ? ? N3 B G 16 ? ? 1.390 1.323 0.067 0.008 N 43 1 C6 B G 16 ? ? N1 B G 16 ? ? 1.469 1.391 0.078 0.007 N 44 1 N1 B C 18 ? ? C6 B C 18 ? ? 1.411 1.367 0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A U 2 ? ? N1 A U 2 ? ? C2 A U 2 ? ? 115.69 121.00 -5.31 0.60 N 2 1 N1 A U 2 ? ? C2 A U 2 ? ? N3 A U 2 ? ? 121.76 114.90 6.86 0.60 N 3 1 C2 A U 2 ? ? N3 A U 2 ? ? C4 A U 2 ? ? 122.44 127.00 -4.56 0.60 N 4 1 N3 A G 3 ? ? C4 A G 3 ? ? C5 A G 3 ? ? 125.16 128.60 -3.44 0.50 N 5 1 C4 A G 3 ? ? C5 A G 3 ? ? N7 A G 3 ? ? 107.09 110.80 -3.71 0.40 N 6 1 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 102.34 106.40 -4.06 0.40 N 7 1 N9 A G 3 ? ? C4 A G 3 ? ? C5 A G 3 ? ? 110.08 105.40 4.68 0.40 N 8 1 N1 A G 3 ? ? C6 A G 3 ? ? O6 A G 3 ? ? 114.12 119.90 -5.78 0.60 N 9 1 C5 A G 3 ? ? C6 A G 3 ? ? O6 A G 3 ? ? 134.45 128.60 5.85 0.60 N 10 1 C4 A G 4 ? ? C5 A G 4 ? ? N7 A G 4 ? ? 113.53 110.80 2.73 0.40 N 11 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 111.92 106.40 5.52 0.40 N 12 1 N9 A G 4 ? ? C4 A G 4 ? ? C5 A G 4 ? ? 99.71 105.40 -5.69 0.40 N 13 1 N3 A G 4 ? ? C4 A G 4 ? ? N9 A G 4 ? ? 130.47 126.00 4.47 0.60 N 14 1 N1 A G 4 ? ? C6 A G 4 ? ? O6 A G 4 ? ? 126.07 119.90 6.17 0.60 N 15 1 C5 A G 4 ? ? C6 A G 4 ? ? O6 A G 4 ? ? 119.74 128.60 -8.86 0.60 N 16 1 C6 A C 6 ? ? N1 A C 6 ? ? C2 A C 6 ? ? 117.26 120.30 -3.04 0.40 N 17 1 N1 A C 6 ? ? C2 A C 6 ? ? N3 A C 6 ? ? 123.40 119.20 4.20 0.70 N 18 1 C5 A C 6 ? ? C4 A C 6 ? ? N4 A C 6 ? ? 124.90 120.20 4.70 0.70 N 19 1 C6 A C 6 ? ? N1 A C 6 ? ? "C1'" A C 6 ? ? 128.26 120.80 7.46 1.20 N 20 1 C2 A C 7 ? ? N3 A C 7 ? ? C4 A C 7 ? ? 123.64 119.90 3.74 0.50 N 21 1 C4 A C 7 ? ? C5 A C 7 ? ? C6 A C 7 ? ? 113.67 117.40 -3.73 0.50 N 22 1 N3 A C 7 ? ? C4 A C 7 ? ? N4 A C 7 ? ? 112.89 118.00 -5.11 0.70 N 23 1 N1 A G 9 ? ? C2 A G 9 ? ? N2 A G 9 ? ? 121.84 116.20 5.64 0.90 N 24 1 N3 A C 10 ? ? C4 A C 10 ? ? C5 A C 10 ? ? 119.33 121.90 -2.57 0.40 N 25 1 N3 A C 10 ? ? C4 A C 10 ? ? N4 A C 10 ? ? 122.30 118.00 4.30 0.70 N 26 1 C6 A U 11 ? ? N1 A U 11 ? ? C2 A U 11 ? ? 115.47 121.00 -5.53 0.60 N 27 1 N1 A U 11 ? ? C2 A U 11 ? ? O2 A U 11 ? ? 128.54 122.80 5.74 0.70 N 28 1 N3 A U 11 ? ? C2 A U 11 ? ? O2 A U 11 ? ? 113.43 122.20 -8.77 0.70 N 29 1 C2 A U 11 ? ? N1 A U 11 ? ? "C1'" A U 11 ? ? 129.62 117.70 11.92 1.20 N 30 1 N1 A G 12 ? ? C6 A G 12 ? ? O6 A G 12 ? ? 125.80 119.90 5.90 0.60 N 31 1 C5 A G 12 ? ? C6 A G 12 ? ? O6 A G 12 ? ? 124.25 128.60 -4.35 0.60 N 32 1 C2 A C 13 ? ? N3 A C 13 ? ? C4 A C 13 ? ? 123.07 119.90 3.17 0.50 N 33 1 N1 A G 15 ? ? C6 A G 15 ? ? O6 A G 15 ? ? 128.28 119.90 8.38 0.60 N 34 1 C5 A G 15 ? ? C6 A G 15 ? ? O6 A G 15 ? ? 119.34 128.60 -9.26 0.60 N 35 1 C6 A G 16 ? ? N1 A G 16 ? ? C2 A G 16 ? ? 120.11 125.10 -4.99 0.60 N 36 1 C5 A G 16 ? ? C6 A G 16 ? ? N1 A G 16 ? ? 114.93 111.50 3.43 0.50 N 37 1 C4 A G 16 ? ? C5 A G 16 ? ? N7 A G 16 ? ? 108.17 110.80 -2.63 0.40 N 38 1 N9 A G 16 ? ? C4 A G 16 ? ? C5 A G 16 ? ? 107.81 105.40 2.41 0.40 N 39 1 N1 A G 16 ? ? C6 A G 16 ? ? O6 A G 16 ? ? 116.22 119.90 -3.68 0.60 N 40 1 N3 A U 17 ? ? C2 A U 17 ? ? O2 A U 17 ? ? 126.44 122.20 4.24 0.70 N 41 1 C2 A C 18 ? ? N3 A C 18 ? ? C4 A C 18 ? ? 123.31 119.90 3.41 0.50 N 42 1 C6 A C 19 ? ? N1 A C 19 ? ? C2 A C 19 ? ? 117.75 120.30 -2.55 0.40 N 43 1 N1 A C 19 ? ? C2 A C 19 ? ? N3 A C 19 ? ? 123.75 119.20 4.55 0.70 N 44 1 C2 A C 19 ? ? N3 A C 19 ? ? C4 A C 19 ? ? 115.87 119.90 -4.03 0.50 N 45 1 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.13 121.90 -4.77 0.70 N 46 1 C6 B U 2 ? ? N1 B U 2 ? ? C2 B U 2 ? ? 114.54 121.00 -6.46 0.60 N 47 1 N1 B U 2 ? ? C2 B U 2 ? ? N3 B U 2 ? ? 121.04 114.90 6.14 0.60 N 48 1 C4 B U 2 ? ? C5 B U 2 ? ? C6 B U 2 ? ? 123.31 119.70 3.61 0.60 N 49 1 N3 B U 2 ? ? C2 B U 2 ? ? O2 B U 2 ? ? 113.05 122.20 -9.15 0.70 N 50 1 N3 B U 2 ? ? C4 B U 2 ? ? O4 B U 2 ? ? 114.98 119.40 -4.42 0.70 N 51 1 C5 B U 2 ? ? C4 B U 2 ? ? O4 B U 2 ? ? 133.43 125.90 7.53 0.60 N 52 1 C6 B U 2 ? ? N1 B U 2 ? ? "C1'" B U 2 ? ? 131.92 121.20 10.72 1.40 N 53 1 N3 B G 3 ? ? C4 B G 3 ? ? C5 B G 3 ? ? 132.69 128.60 4.09 0.50 N 54 1 C4 B G 3 ? ? C5 B G 3 ? ? C6 B G 3 ? ? 114.15 118.80 -4.65 0.60 N 55 1 N3 B G 3 ? ? C4 B G 3 ? ? N9 B G 3 ? ? 120.45 126.00 -5.55 0.60 N 56 1 C6 B G 3 ? ? C5 B G 3 ? ? N7 B G 3 ? ? 136.53 130.40 6.13 0.60 N 57 1 N1 B G 3 ? ? C6 B G 3 ? ? O6 B G 3 ? ? 112.95 119.90 -6.95 0.60 N 58 1 C5 B G 3 ? ? C6 B G 3 ? ? O6 B G 3 ? ? 134.96 128.60 6.36 0.60 N 59 1 N3 B G 4 ? ? C4 B G 4 ? ? C5 B G 4 ? ? 131.93 128.60 3.33 0.50 N 60 1 N3 B G 4 ? ? C4 B G 4 ? ? N9 B G 4 ? ? 122.01 126.00 -3.99 0.60 N 61 1 C4 B G 4 ? ? N9 B G 4 ? ? "C1'" B G 4 ? ? 117.80 126.50 -8.70 1.30 N 62 1 N9 B G 5 ? ? C4 B G 5 ? ? C5 B G 5 ? ? 107.99 105.40 2.59 0.40 N 63 1 N3 B G 5 ? ? C4 B G 5 ? ? N9 B G 5 ? ? 121.24 126.00 -4.76 0.60 N 64 1 N1 B G 5 ? ? C2 B G 5 ? ? N2 B G 5 ? ? 122.56 116.20 6.36 0.90 N 65 1 C2 B C 6 ? ? N3 B C 6 ? ? C4 B C 6 ? ? 125.20 119.90 5.30 0.50 N 66 1 N3 B C 6 ? ? C4 B C 6 ? ? N4 B C 6 ? ? 112.16 118.00 -5.84 0.70 N 67 1 C5 B C 6 ? ? C4 B C 6 ? ? N4 B C 6 ? ? 127.28 120.20 7.08 0.70 N 68 1 N1 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 125.58 118.90 6.68 0.60 N 69 1 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 114.60 121.90 -7.30 0.70 N 70 1 N3 B C 7 ? ? C4 B C 7 ? ? N4 B C 7 ? ? 110.73 118.00 -7.27 0.70 N 71 1 C5 B C 7 ? ? C4 B C 7 ? ? N4 B C 7 ? ? 125.71 120.20 5.51 0.70 N 72 1 C6 B U 8 ? ? N1 B U 8 ? ? C2 B U 8 ? ? 116.45 121.00 -4.55 0.60 N 73 1 N1 B U 8 ? ? C2 B U 8 ? ? N3 B U 8 ? ? 121.18 114.90 6.28 0.60 N 74 1 N3 B U 8 ? ? C2 B U 8 ? ? O2 B U 8 ? ? 113.55 122.20 -8.65 0.70 N 75 1 N3 B U 8 ? ? C4 B U 8 ? ? O4 B U 8 ? ? 114.66 119.40 -4.74 0.70 N 76 1 C2 B G 9 ? ? N3 B G 9 ? ? C4 B G 9 ? ? 115.09 111.90 3.19 0.50 N 77 1 N1 B G 9 ? ? C6 B G 9 ? ? O6 B G 9 ? ? 125.88 119.90 5.98 0.60 N 78 1 C5 B G 9 ? ? C6 B G 9 ? ? O6 B G 9 ? ? 122.33 128.60 -6.27 0.60 N 79 1 C6 B C 10 ? ? N1 B C 10 ? ? C2 B C 10 ? ? 122.96 120.30 2.66 0.40 N 80 1 N1 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 122.51 118.90 3.61 0.60 N 81 1 N1 B U 11 ? ? C2 B U 11 ? ? O2 B U 11 ? ? 117.10 122.80 -5.70 0.70 N 82 1 C5 B U 11 ? ? C4 B U 11 ? ? O4 B U 11 ? ? 121.86 125.90 -4.04 0.60 N 83 1 C2 B G 12 ? ? N3 B G 12 ? ? C4 B G 12 ? ? 115.51 111.90 3.61 0.50 N 84 1 N9 B G 12 ? ? C4 B G 12 ? ? C5 B G 12 ? ? 107.96 105.40 2.56 0.40 N 85 1 N1 B G 12 ? ? C2 B G 12 ? ? N2 B G 12 ? ? 125.02 116.20 8.82 0.90 N 86 1 N3 B G 12 ? ? C2 B G 12 ? ? N2 B G 12 ? ? 112.89 119.90 -7.01 0.70 N 87 1 C6 B C 13 ? ? N1 B C 13 ? ? C2 B C 13 ? ? 116.45 120.30 -3.85 0.40 N 88 1 C4 B G 15 ? ? C5 B G 15 ? ? C6 B G 15 ? ? 122.54 118.80 3.74 0.60 N 89 1 C4 B G 15 ? ? C5 B G 15 ? ? N7 B G 15 ? ? 107.30 110.80 -3.50 0.40 N 90 1 C8 B G 15 ? ? N9 B G 15 ? ? C4 B G 15 ? ? 103.79 106.40 -2.61 0.40 N 91 1 N9 B G 15 ? ? C4 B G 15 ? ? C5 B G 15 ? ? 109.13 105.40 3.73 0.40 N 92 1 N1 B G 15 ? ? C2 B G 15 ? ? N2 B G 15 ? ? 122.28 116.20 6.08 0.90 N 93 1 N3 B G 15 ? ? C2 B G 15 ? ? N2 B G 15 ? ? 112.62 119.90 -7.28 0.70 N 94 1 N1 B G 15 ? ? C6 B G 15 ? ? O6 B G 15 ? ? 126.04 119.90 6.14 0.60 N 95 1 C5 B G 15 ? ? C6 B G 15 ? ? O6 B G 15 ? ? 124.68 128.60 -3.92 0.60 N 96 1 N1 B G 16 ? ? C2 B G 16 ? ? N3 B G 16 ? ? 119.33 123.90 -4.57 0.60 N 97 1 N9 B G 16 ? ? C4 B G 16 ? ? C5 B G 16 ? ? 102.78 105.40 -2.62 0.40 N 98 1 N1 B G 16 ? ? C6 B G 16 ? ? O6 B G 16 ? ? 125.25 119.90 5.35 0.60 N 99 1 C5 B G 16 ? ? C6 B G 16 ? ? O6 B G 16 ? ? 120.68 128.60 -7.92 0.60 N 100 1 N3 B U 17 ? ? C4 B U 17 ? ? O4 B U 17 ? ? 124.87 119.40 5.47 0.70 N 101 1 C5 B U 17 ? ? C4 B U 17 ? ? O4 B U 17 ? ? 120.55 125.90 -5.35 0.60 N 102 1 N1 B C 18 ? ? C2 B C 18 ? ? O2 B C 18 ? ? 124.73 118.90 5.83 0.60 N 103 1 N3 B C 18 ? ? C2 B C 18 ? ? O2 B C 18 ? ? 115.74 121.90 -6.16 0.70 N 104 1 N3 B C 18 ? ? C4 B C 18 ? ? N4 B C 18 ? ? 113.18 118.00 -4.82 0.70 N 105 1 C6 B C 19 ? ? N1 B C 19 ? ? C2 B C 19 ? ? 116.68 120.30 -3.62 0.40 N 106 1 C2 B C 19 ? ? N3 B C 19 ? ? C4 B C 19 ? ? 122.99 119.90 3.09 0.50 N 107 1 N3 B C 19 ? ? C4 B C 19 ? ? C5 B C 19 ? ? 119.26 121.90 -2.64 0.40 N 108 1 C5 B C 19 ? ? C6 B C 19 ? ? N1 B C 19 ? ? 126.00 121.00 5.00 0.50 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 20 ? C HOH . 2 1 A HOH 24 ? C HOH . 3 1 A HOH 25 ? C HOH . 4 1 A HOH 26 ? C HOH . 5 1 A HOH 31 ? C HOH . 6 1 A HOH 37 ? C HOH . 7 1 A HOH 39 ? C HOH . 8 1 A HOH 41 ? C HOH . 9 1 B HOH 21 ? D HOH . 10 1 B HOH 25 ? D HOH . 11 1 B HOH 27 ? D HOH . 12 1 B HOH 28 ? D HOH . 13 1 B HOH 29 ? D HOH . 14 1 B HOH 30 ? D HOH . 15 1 B HOH 34 ? D HOH . 16 1 B HOH 35 ? D HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 U OP3 O N N 77 U P P N N 78 U OP1 O N N 79 U OP2 O N N 80 U "O5'" O N N 81 U "C5'" C N N 82 U "C4'" C N R 83 U "O4'" O N N 84 U "C3'" C N S 85 U "O3'" O N N 86 U "C2'" C N R 87 U "O2'" O N N 88 U "C1'" C N R 89 U N1 N N N 90 U C2 C N N 91 U O2 O N N 92 U N3 N N N 93 U C4 C N N 94 U O4 O N N 95 U C5 C N N 96 U C6 C N N 97 U HOP3 H N N 98 U HOP2 H N N 99 U "H5'" H N N 100 U "H5''" H N N 101 U "H4'" H N N 102 U "H3'" H N N 103 U "HO3'" H N N 104 U "H2'" H N N 105 U "HO2'" H N N 106 U "H1'" H N N 107 U H3 H N N 108 U H5 H N N 109 U H6 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 U OP3 P sing N N 79 U OP3 HOP3 sing N N 80 U P OP1 doub N N 81 U P OP2 sing N N 82 U P "O5'" sing N N 83 U OP2 HOP2 sing N N 84 U "O5'" "C5'" sing N N 85 U "C5'" "C4'" sing N N 86 U "C5'" "H5'" sing N N 87 U "C5'" "H5''" sing N N 88 U "C4'" "O4'" sing N N 89 U "C4'" "C3'" sing N N 90 U "C4'" "H4'" sing N N 91 U "O4'" "C1'" sing N N 92 U "C3'" "O3'" sing N N 93 U "C3'" "C2'" sing N N 94 U "C3'" "H3'" sing N N 95 U "O3'" "HO3'" sing N N 96 U "C2'" "O2'" sing N N 97 U "C2'" "C1'" sing N N 98 U "C2'" "H2'" sing N N 99 U "O2'" "HO2'" sing N N 100 U "C1'" N1 sing N N 101 U "C1'" "H1'" sing N N 102 U N1 C2 sing N N 103 U N1 C6 sing N N 104 U C2 O2 doub N N 105 U C2 N3 sing N N 106 U N3 C4 sing N N 107 U N3 H3 sing N N 108 U C4 O4 doub N N 109 U C4 C5 sing N N 110 U C5 C6 doub N N 111 U C5 H5 sing N N 112 U C6 H6 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3SZX 'double helix' 3SZX 'a-form double helix' 3SZX 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 19 1_555 -0.890 -0.366 -0.138 -6.075 -5.534 -0.295 1 A_G3:C19_B A 3 ? B 19 ? 19 1 1 A G 4 1_555 B C 18 1_555 0.263 -0.115 -0.097 2.533 2.063 -0.541 2 A_G4:C18_B A 4 ? B 18 ? 19 1 1 A G 5 1_555 B U 17 1_555 -1.773 -0.519 -0.394 -7.350 -13.922 -2.682 3 A_G5:U17_B A 5 ? B 17 ? 28 1 1 A C 6 1_555 B G 16 1_555 -0.297 -0.223 0.115 7.233 -9.242 -2.719 4 A_C6:G16_B A 6 ? B 16 ? 19 1 1 A C 7 1_555 B G 15 1_555 0.272 -0.060 -0.078 3.893 -15.112 2.461 5 A_C7:G15_B A 7 ? B 15 ? 19 1 1 A U 8 1_555 B U 14 1_555 1.848 -1.156 -0.114 -5.236 -8.678 -29.190 6 A_U8:U14_B A 8 ? B 14 ? ? ? 1 A G 9 1_555 B C 13 1_555 -0.500 -0.240 0.275 -2.703 -14.352 9.899 7 A_G9:C13_B A 9 ? B 13 ? 19 1 1 A C 10 1_555 B G 12 1_555 -0.046 -0.221 0.015 0.253 -11.767 4.473 8 A_C10:G12_B A 10 ? B 12 ? 19 1 1 A G 12 1_555 B C 10 1_555 -0.513 -0.128 0.118 0.271 -16.683 2.175 9 A_G12:C10_B A 12 ? B 10 ? 19 1 1 A C 13 1_555 B G 9 1_555 -0.148 -0.196 0.106 1.638 -11.202 1.944 10 A_C13:G9_B A 13 ? B 9 ? 19 1 1 A G 15 1_555 B C 7 1_555 0.492 -0.248 -0.269 0.184 -1.476 0.027 11 A_G15:C7_B A 15 ? B 7 ? 19 1 1 A G 16 1_555 B C 6 1_555 -0.341 -0.316 -0.248 -3.672 -7.878 -3.659 12 A_G16:C6_B A 16 ? B 6 ? 19 1 1 A U 17 1_555 B G 5 1_555 1.417 -0.389 -0.061 4.070 -6.996 4.106 13 A_U17:G5_B A 17 ? B 5 ? 28 1 1 A C 18 1_555 B G 4 1_555 0.470 -0.436 -0.316 3.904 -11.333 -2.103 14 A_C18:G4_B A 18 ? B 4 ? 19 1 1 A C 19 1_555 B G 3 1_555 0.574 -0.404 -0.152 -2.121 1.041 -0.114 15 A_C19:G3_B A 19 ? B 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 19 1_555 A G 4 1_555 B C 18 1_555 -0.032 -1.825 3.120 -0.676 1.273 36.522 -3.075 -0.037 3.057 2.030 1.078 36.550 1 AA_G3G4:C18C19_BB A 3 ? B 19 ? A 4 ? B 18 ? 1 A G 4 1_555 B C 18 1_555 A G 5 1_555 B U 17 1_555 -0.261 -2.456 3.544 2.289 6.520 17.292 -10.910 1.970 2.409 20.647 -7.248 18.612 2 AA_G4G5:U17C18_BB A 4 ? B 18 ? A 5 ? B 17 ? 1 A G 5 1_555 B U 17 1_555 A C 6 1_555 B G 16 1_555 -0.100 -1.446 2.966 -6.989 5.883 37.812 -2.802 -0.597 2.696 8.919 10.596 38.860 3 AA_G5C6:G16U17_BB A 5 ? B 17 ? A 6 ? B 16 ? 1 A C 6 1_555 B G 16 1_555 A C 7 1_555 B G 15 1_555 0.379 -1.625 3.278 3.309 10.873 34.907 -3.980 -0.178 2.693 17.559 -5.343 36.656 4 AA_C6C7:G15G16_BB A 6 ? B 16 ? A 7 ? B 15 ? 1 A C 7 1_555 B G 15 1_555 A U 8 1_555 B U 14 1_555 -1.565 -1.787 3.474 -0.048 14.180 41.409 -3.735 2.099 2.749 19.382 0.066 43.668 5 AA_C7U8:U14G15_BB A 7 ? B 15 ? A 8 ? B 14 ? 1 A U 8 1_555 B U 14 1_555 A G 9 1_555 B C 13 1_555 1.630 -2.055 3.040 1.058 5.800 24.375 -6.223 -3.483 2.557 13.485 -2.461 25.067 6 AA_U8G9:C13U14_BB A 8 ? B 14 ? A 9 ? B 13 ? 1 A G 9 1_555 B C 13 1_555 A C 10 1_555 B G 12 1_555 -0.200 -1.147 3.084 0.415 6.057 30.676 -3.172 0.443 2.809 11.310 -0.776 31.257 7 AA_G9C10:G12C13_BB A 9 ? B 13 ? A 10 ? B 12 ? 1 A C 10 1_555 B G 12 1_555 A G 12 1_555 B C 10 1_555 -0.095 -2.713 6.214 -1.989 14.927 64.089 -3.615 -0.060 5.533 13.866 1.848 65.651 8 AA_C10G12:C10G12_BB A 10 ? B 12 ? A 12 ? B 10 ? 1 A G 12 1_555 B C 10 1_555 A C 13 1_555 B G 9 1_555 0.125 -1.712 3.162 -0.534 11.228 33.095 -4.360 -0.279 2.466 19.039 0.905 34.901 9 AA_G12C13:G9C10_BB A 12 ? B 10 ? A 13 ? B 9 ? 1 A C 13 1_555 B G 9 1_555 A G 15 1_555 B C 7 1_555 0.942 -3.423 6.364 6.513 15.892 65.506 -4.220 -0.382 5.564 14.431 -5.914 67.477 10 AA_C13G15:C7G9_BB A 13 ? B 9 ? A 15 ? B 7 ? 1 A G 15 1_555 B C 7 1_555 A G 16 1_555 B C 6 1_555 -0.427 -2.342 3.427 -1.208 6.576 23.800 -7.389 0.646 2.709 15.557 2.857 24.708 11 AA_G15G16:C6C7_BB A 15 ? B 7 ? A 16 ? B 6 ? 1 A G 16 1_555 B C 6 1_555 A U 17 1_555 B G 5 1_555 0.084 -1.590 3.124 -3.094 5.704 36.597 -3.195 -0.511 2.837 8.997 4.881 37.148 12 AA_G16U17:G5C6_BB A 16 ? B 6 ? A 17 ? B 5 ? 1 A U 17 1_555 B G 5 1_555 A C 18 1_555 B G 4 1_555 -0.050 -1.774 3.210 4.823 8.322 30.534 -4.592 0.885 2.610 15.331 -8.885 31.979 13 AA_U17C18:G4G5_BB A 17 ? B 5 ? A 18 ? B 4 ? 1 A C 18 1_555 B G 4 1_555 A C 19 1_555 B G 3 1_555 -0.066 -2.096 3.476 -1.162 5.847 28.050 -5.551 -0.128 2.986 11.894 2.364 28.664 14 AA_C18C19:G3G4_BB A 18 ? B 4 ? A 19 ? B 3 ? # _atom_sites.entry_id 3SZX _atom_sites.fract_transf_matrix[1][1] 0.025313 _atom_sites.fract_transf_matrix[1][2] 0.014615 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029229 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006415 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_