HEADER OXIDOREDUCTASE 20-JUL-11 3T0K TITLE CRYSTAL STRUCTURE OF SULFIDE:QUINONE OXIDOREDUCTASE FROM TITLE 2 ACIDITHIOBACILLUS FERROOXIDANS WITH BOUND TRISULFIDE AND TITLE 3 DECYLUBIQUINONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFIDE-QUINONE REDUCTASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS ATCC 23270; SOURCE 3 ORGANISM_TAXID: 243159; SOURCE 4 STRAIN: ATCC 23270 / DSM 14882 / NCIB 8455; SOURCE 5 GENE: AFE_1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFIDE:QUINONE OXIDOREDUCTASE, INTEGRAL MONOTOPIC MEMBRANE PROTEIN, KEYWDS 2 COMPLEX WITH TETRASULFUR AND DECYLUBIQUINONE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.CHERNEY,Y.ZHANG,M.N.G.JAMES,J.H.WEINER REVDAT 3 07-MAY-14 3T0K 1 REMARK REVDAT 2 13-JUN-12 3T0K 1 JRNL REVDAT 1 16-MAY-12 3T0K 0 JRNL AUTH M.M.CHERNEY,Y.ZHANG,M.N.JAMES,J.H.WEINER JRNL TITL STRUCTURE-ACTIVITY CHARACTERIZATION OF SULFIDE:QUINONE JRNL TITL 2 OXIDOREDUCTASE VARIANTS. JRNL REF J.STRUCT.BIOL. V. 178 319 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22542586 JRNL DOI 10.1016/J.JSB.2012.04.007 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 33510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1272 - 5.5989 0.99 2975 176 0.1791 0.2206 REMARK 3 2 5.5989 - 4.4460 1.00 3023 150 0.1326 0.1799 REMARK 3 3 4.4460 - 3.8846 1.00 2656 113 0.1412 0.2021 REMARK 3 4 3.8846 - 3.5297 0.78 2211 115 0.1683 0.1906 REMARK 3 5 3.5297 - 3.2768 0.82 2430 143 0.1822 0.2226 REMARK 3 6 3.2768 - 3.0837 1.00 3046 155 0.1993 0.2413 REMARK 3 7 3.0837 - 2.9293 1.00 3013 141 0.1955 0.2603 REMARK 3 8 2.9293 - 2.8018 1.00 2998 175 0.1900 0.2198 REMARK 3 9 2.8018 - 2.6940 1.00 3014 172 0.1999 0.2717 REMARK 3 10 2.6940 - 2.6011 0.59 1779 105 0.2123 0.3142 REMARK 3 11 2.6011 - 2.5198 1.00 2996 174 0.2085 0.2487 REMARK 3 12 2.5198 - 2.4477 1.00 3034 134 0.1926 0.2406 REMARK 3 13 2.4477 - 2.3833 1.00 2955 190 0.2039 0.2630 REMARK 3 14 2.3833 - 2.3252 1.00 3034 159 0.2036 0.2267 REMARK 3 15 2.3252 - 2.2723 1.00 2997 153 0.1940 0.2156 REMARK 3 16 2.2723 - 2.2240 0.38 1176 39 0.2086 0.2629 REMARK 3 17 2.2240 - 2.1795 1.00 3020 144 0.2063 0.2908 REMARK 3 18 2.1795 - 2.1384 1.00 3016 147 0.2303 0.2532 REMARK 3 19 2.1384 - 2.1002 1.00 3053 153 0.2390 0.2840 REMARK 3 20 2.1002 - 2.0646 0.42 1274 73 0.2514 0.2170 REMARK 3 21 2.0646 - 2.0313 1.00 2984 154 0.3077 0.3536 REMARK 3 22 2.0313 - 2.0000 1.00 3000 181 0.3279 0.3714 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 48.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.600 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.64220 REMARK 3 B22 (A**2) : -5.64220 REMARK 3 B33 (A**2) : 11.28450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3400 REMARK 3 ANGLE : 1.192 4611 REMARK 3 CHIRALITY : 0.076 491 REMARK 3 PLANARITY : 0.005 585 REMARK 3 DIHEDRAL : 14.547 1252 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 1:161) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6203 -26.5939 12.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.4292 REMARK 3 T33: 0.1882 T12: -0.1034 REMARK 3 T13: 0.0077 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.1169 L22: 3.2596 REMARK 3 L33: 0.9723 L12: 0.5455 REMARK 3 L13: 0.0514 L23: -0.5370 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: -0.2856 S13: -0.1591 REMARK 3 S21: 0.4934 S22: -0.0914 S23: -0.0454 REMARK 3 S31: -0.0033 S32: -0.2602 S33: 0.0114 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 162:232) REMARK 3 ORIGIN FOR THE GROUP (A): 64.4343 -17.1180 6.1475 REMARK 3 T TENSOR REMARK 3 T11: -0.0301 T22: 0.1346 REMARK 3 T33: 0.9391 T12: -0.3834 REMARK 3 T13: -0.1161 T23: 0.2030 REMARK 3 L TENSOR REMARK 3 L11: 0.9527 L22: 2.3391 REMARK 3 L33: 0.0890 L12: -0.2368 REMARK 3 L13: 0.0656 L23: -0.1381 REMARK 3 S TENSOR REMARK 3 S11: 0.1532 S12: 0.0329 S13: 0.1747 REMARK 3 S21: 0.4410 S22: -0.5018 S23: -2.1514 REMARK 3 S31: -0.2845 S32: 0.5280 S33: -0.0221 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 233:341) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7516 -25.8621 -2.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.3175 T22: 0.4005 REMARK 3 T33: 0.2267 T12: -0.0694 REMARK 3 T13: 0.0520 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.9048 L22: 3.3305 REMARK 3 L33: 1.0312 L12: 0.7010 REMARK 3 L13: 0.1083 L23: -0.8981 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.2315 S13: -0.0860 REMARK 3 S21: -0.3625 S22: 0.0154 S23: -0.3896 REMARK 3 S31: 0.2258 S32: -0.1382 S33: -0.0225 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 342:377) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7116 -10.3374 -1.9742 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.4012 REMARK 3 T33: 0.2680 T12: -0.0790 REMARK 3 T13: 0.0399 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 1.4887 L22: 2.6701 REMARK 3 L33: 0.8938 L12: 0.0387 REMARK 3 L13: -0.5474 L23: -0.9289 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: 0.0219 S13: 0.1078 REMARK 3 S21: -0.1395 S22: 0.1188 S23: 0.1577 REMARK 3 S31: 0.1318 S32: -0.5146 S33: -0.1749 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 378:410) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1700 -7.2124 11.4226 REMARK 3 T TENSOR REMARK 3 T11: 0.3836 T22: 0.4007 REMARK 3 T33: 0.3575 T12: 0.0347 REMARK 3 T13: 0.0678 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.8134 L22: 2.4057 REMARK 3 L33: 2.5249 L12: 1.1046 REMARK 3 L13: -1.5833 L23: -1.2018 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.1061 S13: 0.3553 REMARK 3 S21: 0.4827 S22: 0.1138 S23: 0.2954 REMARK 3 S31: -0.1104 S32: -0.5447 S33: -0.0225 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB066884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 14.600 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 14.70 REMARK 200 R MERGE FOR SHELL (I) : 1.02200 REMARK 200 R SYM FOR SHELL (I) : 1.02200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 600, 0.1 M BIS-TRIS BUFFER,0.1 REMARK 280 M MGSO4, 5 MM DECYLUBIQUINONE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.35000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.70000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.35000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 27.35000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.70000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 GLY A 420 REMARK 465 ILE A 421 REMARK 465 THR A 422 REMARK 465 ARG A 423 REMARK 465 LEU A 424 REMARK 465 LYS A 425 REMARK 465 GLU A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 THR A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 LYS A 432 REMARK 465 ALA A 433 REMARK 465 SER A 434 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS A 356 CA CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 9 67.49 -109.01 REMARK 500 MET A 180 14.70 -164.03 REMARK 500 LEU A 199 19.11 59.99 REMARK 500 ASP A 206 41.50 -98.66 REMARK 500 PRO A 371 -148.82 -80.76 REMARK 500 SER A 407 -70.76 -69.38 REMARK 500 GLU A 408 144.29 178.49 REMARK 500 PHE A 410 -86.27 -33.77 REMARK 500 TYR A 411 84.09 -68.83 REMARK 500 LYS A 413 48.48 -74.59 REMARK 500 LEU A 415 22.78 -77.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 681 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 5.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCQ A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S3H A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H2S A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KPG RELATED DB: PDB REMARK 900 RELATED ID: 3KPI RELATED DB: PDB REMARK 900 RELATED ID: 3KPK RELATED DB: PDB REMARK 900 RELATED ID: 3HYV RELATED DB: PDB REMARK 900 RELATED ID: 3HYW RELATED DB: PDB REMARK 900 RELATED ID: 3HYX RELATED DB: PDB REMARK 900 RELATED ID: 3SX6 RELATED DB: PDB REMARK 900 RELATED ID: 3SXI RELATED DB: PDB REMARK 900 RELATED ID: 3SY4 RELATED DB: PDB REMARK 900 RELATED ID: 3SYI RELATED DB: PDB REMARK 900 RELATED ID: 3SZ0 RELATED DB: PDB REMARK 900 RELATED ID: 3SZC RELATED DB: PDB REMARK 900 RELATED ID: 3SZF RELATED DB: PDB REMARK 900 RELATED ID: 3SZW RELATED DB: PDB REMARK 900 RELATED ID: 3T14 RELATED DB: PDB REMARK 900 RELATED ID: 3T2K RELATED DB: PDB REMARK 900 RELATED ID: 3T2Y RELATED DB: PDB REMARK 900 RELATED ID: 3T2Z RELATED DB: PDB REMARK 900 RELATED ID: 3T31 RELATED DB: PDB DBREF 3T0K A 2 434 UNP B7JBP8 B7JBP8_ACIF2 2 434 SEQADV 3T0K MET A -2 UNP B7JBP8 EXPRESSION TAG SEQADV 3T0K ARG A -1 UNP B7JBP8 EXPRESSION TAG SEQADV 3T0K GLY A 0 UNP B7JBP8 EXPRESSION TAG SEQADV 3T0K SER A 1 UNP B7JBP8 EXPRESSION TAG SEQRES 1 A 437 MET ARG GLY SER ALA HIS VAL VAL ILE LEU GLY ALA GLY SEQRES 2 A 437 THR GLY GLY MET PRO ALA ALA TYR GLU MET LYS GLU ALA SEQRES 3 A 437 LEU GLY SER GLY HIS GLU VAL THR LEU ILE SER ALA ASN SEQRES 4 A 437 ASP TYR PHE GLN PHE VAL PRO SER ASN PRO TRP VAL GLY SEQRES 5 A 437 VAL GLY TRP LYS GLU ARG ASP ASP ILE ALA PHE PRO ILE SEQRES 6 A 437 ARG HIS TYR VAL GLU ARG LYS GLY ILE HIS PHE ILE ALA SEQRES 7 A 437 GLN SER ALA GLU GLN ILE ASP ALA GLU ALA GLN ASN ILE SEQRES 8 A 437 THR LEU ALA ASP GLY ASN THR VAL HIS TYR ASP TYR LEU SEQRES 9 A 437 MET ILE ALA THR GLY PRO LYS LEU ALA PHE GLU ASN VAL SEQRES 10 A 437 PRO GLY SER ASP PRO HIS GLU GLY PRO VAL GLN SER ILE SEQRES 11 A 437 CYS THR VAL ASP HIS ALA GLU ARG ALA PHE ALA GLU TYR SEQRES 12 A 437 GLN ALA LEU LEU ARG GLU PRO GLY PRO ILE VAL ILE GLY SEQRES 13 A 437 ALA MET ALA GLY ALA SER CYS PHE GLY PRO ALA TYR GLU SEQRES 14 A 437 TYR ALA MET ILE VAL ALA SER ASP LEU LYS LYS ARG GLY SEQRES 15 A 437 MET ARG ASP LYS ILE PRO SER PHE THR PHE ILE THR SER SEQRES 16 A 437 GLU PRO TYR ILE GLY HIS LEU GLY ILE GLN GLY VAL GLY SEQRES 17 A 437 ASP SER LYS GLY ILE LEU THR LYS GLY LEU LYS GLU GLU SEQRES 18 A 437 GLY ILE GLU ALA TYR THR ASN CYS LYS VAL THR LYS VAL SEQRES 19 A 437 GLU ASP ASN LYS MET TYR VAL THR GLN VAL ASP GLU LYS SEQRES 20 A 437 GLY GLU THR ILE LYS GLU MET VAL LEU PRO VAL LYS PHE SEQRES 21 A 437 GLY MET MET ILE PRO ALA PHE LYS GLY VAL PRO ALA VAL SEQRES 22 A 437 ALA GLY VAL GLU GLY LEU CYS ASN PRO GLY GLY PHE VAL SEQRES 23 A 437 LEU VAL ASP GLU HIS GLN ARG SER LYS LYS TYR ALA ASN SEQRES 24 A 437 ILE PHE ALA ALA GLY ILE ALA ILE ALA ILE PRO PRO VAL SEQRES 25 A 437 GLU THR THR PRO VAL PRO THR GLY ALA PRO LYS THR GLY SEQRES 26 A 437 TYR MET ILE GLU SER MET VAL SER ALA ALA VAL HIS ASN SEQRES 27 A 437 ILE LYS ALA ASP LEU GLU GLY ARG LYS GLY GLU GLN THR SEQRES 28 A 437 MET GLY THR TRP ASN ALA VAL CYS PHE ALA ASP MET GLY SEQRES 29 A 437 ASP ARG GLY ALA ALA PHE ILE ALA LEU PRO GLN LEU LYS SEQRES 30 A 437 PRO ARG LYS VAL ASP VAL PHE ALA TYR GLY ARG TRP VAL SEQRES 31 A 437 HIS LEU ALA LYS VAL ALA PHE GLU LYS TYR PHE ILE ARG SEQRES 32 A 437 LYS MET LYS MET GLY VAL SER GLU PRO PHE TYR GLU LYS SEQRES 33 A 437 VAL LEU PHE LYS MET MET GLY ILE THR ARG LEU LYS GLU SEQRES 34 A 437 GLU ASP THR HIS ARG LYS ALA SER HET FAD A 500 53 HET DCQ A 502 23 HET S3H A 503 3 HET H2S A 504 1 HET H2S A 505 1 HET H2S A 506 1 HET H2S A 507 1 HET SO4 A 508 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM DCQ 2-DECYL-5,6-DIMETHOXY-3-METHYLCYCLOHEXA-2,5-DIENE-1,4- HETNAM 2 DCQ DIONE HETNAM S3H TRISULFANE HETNAM H2S HYDROSULFURIC ACID HETNAM SO4 SULFATE ION HETSYN DCQ DECYLUBIQUINONE HETSYN H2S HYDROGEN SULFIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 DCQ C19 H30 O4 FORMUL 4 S3H H2 S3 FORMUL 5 H2S 4(H2 S) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *220(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 SER A 44 VAL A 50 1 7 HELIX 3 3 GLU A 54 ILE A 58 1 5 HELIX 4 4 ILE A 62 ARG A 68 1 7 HELIX 5 5 PHE A 111 VAL A 114 5 4 HELIX 6 6 THR A 129 GLU A 146 1 18 HELIX 7 7 PHE A 161 ARG A 178 1 18 HELIX 8 8 MET A 180 ILE A 184 5 5 HELIX 9 9 ASP A 206 GLU A 218 1 13 HELIX 10 10 VAL A 267 GLY A 272 1 6 HELIX 11 11 GLY A 301 ILE A 304 5 4 HELIX 12 12 THR A 321 LEU A 340 1 20 HELIX 13 13 ARG A 385 GLY A 405 1 21 SHEET 1 A 5 HIS A 72 ILE A 74 0 SHEET 2 A 5 GLU A 29 ILE A 33 1 N LEU A 32 O HIS A 72 SHEET 3 A 5 HIS A 3 LEU A 7 1 N ILE A 6 O THR A 31 SHEET 4 A 5 TYR A 100 ILE A 103 1 O MET A 102 N VAL A 5 SHEET 5 A 5 ILE A 297 ALA A 299 1 O PHE A 298 N LEU A 101 SHEET 1 B 2 TYR A 38 GLN A 40 0 SHEET 2 B 2 ALA A 59 PRO A 61 -1 O PHE A 60 N PHE A 39 SHEET 1 C 3 ALA A 78 ASP A 82 0 SHEET 2 C 3 ASN A 87 LEU A 90 -1 O THR A 89 N GLU A 79 SHEET 3 C 3 THR A 95 HIS A 97 -1 O VAL A 96 N ILE A 88 SHEET 1 D 2 PRO A 107 LEU A 109 0 SHEET 2 D 2 PHE A 264 GLY A 266 -1 O LYS A 265 N LYS A 108 SHEET 1 E 5 VAL A 124 GLN A 125 0 SHEET 2 E 5 PHE A 257 ILE A 261 1 O GLY A 258 N GLN A 125 SHEET 3 E 5 ILE A 150 ALA A 154 1 N GLY A 153 O ILE A 261 SHEET 4 E 5 PHE A 187 THR A 191 1 O THR A 188 N ILE A 150 SHEET 5 E 5 GLU A 221 TYR A 223 1 O GLU A 221 N PHE A 189 SHEET 1 F 3 CYS A 226 GLU A 232 0 SHEET 2 F 3 LYS A 235 VAL A 241 -1 O LYS A 235 N GLU A 232 SHEET 3 F 3 THR A 247 PRO A 254 -1 O LEU A 253 N MET A 236 SHEET 1 G 3 ALA A 354 ASP A 359 0 SHEET 2 G 3 GLY A 364 LEU A 370 -1 O ALA A 365 N ALA A 358 SHEET 3 G 3 VAL A 378 GLY A 384 -1 O ALA A 382 N ALA A 366 LINK SG ACYS A 356 S AH2S A 504 1555 1555 2.05 LINK SG BCYS A 160 S1 BS3H A 503 1555 1555 2.06 LINK SG BCYS A 356 S3 BS3H A 503 1555 1555 2.07 LINK SG ACYS A 160 S AH2S A 505 1555 1555 2.03 CISPEP 1 LEU A 370 PRO A 371 0 -0.63 CISPEP 2 LYS A 374 PRO A 375 0 2.39 CISPEP 3 SER A 407 GLU A 408 0 -8.53 SITE 1 AC1 39 LEU A 7 GLY A 8 ALA A 9 GLY A 10 SITE 2 AC1 39 THR A 11 GLY A 12 SER A 34 ALA A 35 SITE 3 AC1 39 VAL A 42 PRO A 43 SER A 77 ALA A 78 SITE 4 AC1 39 ALA A 104 THR A 105 GLY A 106 PRO A 107 SITE 5 AC1 39 CYS A 160 PRO A 163 GLY A 301 ILE A 302 SITE 6 AC1 39 THR A 321 GLY A 322 ILE A 325 VAL A 355 SITE 7 AC1 39 PHE A 357 LYS A 391 DCQ A 502 S3H A 503 SITE 8 AC1 39 H2S A 504 HOH A 531 HOH A 532 HOH A 551 SITE 9 AC1 39 HOH A 555 HOH A 565 HOH A 579 HOH A 586 SITE 10 AC1 39 HOH A 621 HOH A 624 HOH A 723 SITE 1 AC2 11 PHE A 41 PRO A 43 GLY A 322 TYR A 323 SITE 2 AC2 11 VAL A 355 PHE A 357 LYS A 391 PHE A 394 SITE 3 AC2 11 TYR A 411 LYS A 417 FAD A 500 SITE 1 AC3 3 CYS A 160 CYS A 356 FAD A 500 SITE 1 AC4 5 THR A 321 VAL A 355 CYS A 356 FAD A 500 SITE 2 AC4 5 H2S A 506 SITE 1 AC5 1 CYS A 160 SITE 1 AC6 4 GLY A 162 CYS A 356 H2S A 504 HOH A 733 SITE 1 AC7 5 LEU A 109 SER A 126 CYS A 128 THR A 129 SITE 2 AC7 5 HIS A 132 SITE 1 AC8 4 MET A -2 HIS A 3 HIS A 97 HOH A 612 CRYST1 149.960 149.960 82.050 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006668 0.003850 0.000000 0.00000 SCALE2 0.000000 0.007700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012188 0.00000