HEADER TOXIN 20-JUL-11 3T0R TITLE CRYSTAL STRUCTURE OF MJTX-I, A MYOTOXIC LYS49-PHOSPHOLIPASE A2 FROM TITLE 2 BOTHROPS MOOJENI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A2 HOMOLOG 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MJTX-I, MYOTOXIN I; COMPND 5 EC: 3.1.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334 KEYWDS LYS49-PHOSPHOLIPASE A2, MYOTOXIN, VENOM GLANDS, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,D.P.MARCHI-SALVADOR,M.R.M.FONTES REVDAT 3 13-SEP-23 3T0R 1 REMARK REVDAT 2 25-OCT-17 3T0R 1 REMARK REVDAT 1 01-AUG-12 3T0R 0 JRNL AUTH G.H.M.SALVADOR,D.P.MARCHI-SALVADOR,M.R.M.FONTES JRNL TITL CRYSTAL STRUCTURE OF MJTX-I, A MYOTOXIC LYS49-PHOSPHOLIPASE JRNL TITL 2 A2 FROM BOTHROPS MOOJENI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 14529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.343 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3654 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4930 ; 2.151 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 7.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;40.347 ;24.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 609 ;21.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;25.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2724 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2349 ; 2.153 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3708 ; 3.867 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 4.545 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1222 ; 6.953 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3654 ; 2.599 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1119 63.3141 32.7092 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1382 REMARK 3 T33: 0.1569 T12: 0.0234 REMARK 3 T13: 0.0090 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.8761 L22: 2.0907 REMARK 3 L33: 0.5244 L12: 0.5492 REMARK 3 L13: 0.5724 L23: 0.8637 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.0393 S13: 0.0965 REMARK 3 S21: 0.0397 S22: 0.0596 S23: -0.1054 REMARK 3 S31: -0.0384 S32: -0.0212 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1027 31.4378 28.2515 REMARK 3 T TENSOR REMARK 3 T11: 0.0657 T22: 0.1666 REMARK 3 T33: 0.1914 T12: -0.0095 REMARK 3 T13: 0.0365 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.3150 L22: 3.4406 REMARK 3 L33: 1.0969 L12: 0.8960 REMARK 3 L13: 0.2658 L23: 0.1216 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0810 S13: -0.0994 REMARK 3 S21: 0.2722 S22: 0.1120 S23: -0.1978 REMARK 3 S31: 0.0140 S32: -0.0273 S33: -0.1467 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7874 77.3153 0.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1497 REMARK 3 T33: 0.0843 T12: 0.1018 REMARK 3 T13: -0.0236 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.8460 L22: 4.1101 REMARK 3 L33: 2.8526 L12: -0.4488 REMARK 3 L13: -0.0629 L23: 0.8523 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.0825 S13: 0.1065 REMARK 3 S21: -0.0137 S22: 0.2833 S23: 0.0607 REMARK 3 S31: 0.1245 S32: 0.1040 S33: -0.2098 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 133 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8491 46.0666 -2.0331 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.2012 REMARK 3 T33: 0.0962 T12: 0.1510 REMARK 3 T13: 0.0960 T23: 0.1224 REMARK 3 L TENSOR REMARK 3 L11: 1.0233 L22: 4.3031 REMARK 3 L33: 2.4087 L12: -0.4725 REMARK 3 L13: 0.5435 L23: 1.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: -0.1217 S13: -0.1766 REMARK 3 S21: 0.7840 S22: 0.4378 S23: 0.1374 REMARK 3 S31: 0.0783 S32: -0.2436 S33: -0.2498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000066891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8,5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.421 REMARK 200 MONOCHROMATOR : SI CURVED CRYSTAL ASYMMETRICALLY REMARK 200 -CUT REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 33.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% (W/V) PEG 4000; 0.1 M TRIS HCL; REMARK 280 0.15 M MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.79650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.92400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.79650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.92400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ACCORDING TO SMALL ANGLE X-RAY SCATTERING EXPERIMENTS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 119 REMARK 465 TYR C 120 REMARK 465 LEU C 121 REMARK 465 LYS C 122 REMARK 465 ASP D 118 REMARK 465 VAL D 119 REMARK 465 TYR D 120 REMARK 465 LEU D 121 REMARK 465 LYS D 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 ASN A 60 CG OD1 ND2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 ASN B 88 CG OD1 ND2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 VAL B 119 CG1 CG2 REMARK 470 LEU B 121 CG CD1 CD2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 LYS C 20 CG CD CE NZ REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 LYS C 93 CG CD CE NZ REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 GLN D 11 CG CD OE1 NE2 REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 LYS D 20 CG CD CE NZ REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 LEU D 58 CG CD1 CD2 REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 TYR D 73 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP D 76 CG OD1 OD2 REMARK 470 GLU D 86 CG CD OE1 OE2 REMARK 470 ASN D 88 CG OD1 ND2 REMARK 470 LYS D 115 CG CD CE NZ REMARK 470 PHE D 125 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 123 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO A 123 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 TRP D 77 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 ASN D 88 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO D 90 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 48.17 39.45 REMARK 500 GLU A 87 -127.52 39.53 REMARK 500 ASP A 118 -33.93 -35.29 REMARK 500 PRO A 123 46.57 -15.80 REMARK 500 GLU B 87 -134.19 -179.33 REMARK 500 LEU B 121 -128.54 64.13 REMARK 500 ALA C 24 40.62 -154.50 REMARK 500 ASN C 79 48.79 74.11 REMARK 500 ASP D 67 82.15 51.94 REMARK 500 LYS D 116 7.35 -60.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 A 134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I3H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BTHTX-I, A LYS49-PLA2 HOMOLOGUE FROM BOTHROPS REMARK 900 JARARACUSSU REMARK 900 RELATED ID: 2Q2J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PRTX-I, A LYS49-PLA2 HOMOLOGUE FROM BOTHROPS REMARK 900 PIRAJAI REMARK 900 RELATED ID: 1PA0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BNSP-7, A LYS49-PLA2 FROM BOTHROPS NEUWIEDI REMARK 900 PAULOENSIS. DBREF 3T0R A 1 133 UNP P82114 PA21B_BOTMO 1 121 DBREF 3T0R B 1 133 UNP P82114 PA21B_BOTMO 1 121 DBREF 3T0R C 1 133 UNP P82114 PA21B_BOTMO 1 121 DBREF 3T0R D 1 133 UNP P82114 PA21B_BOTMO 1 121 SEQRES 1 A 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 A 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 A 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 A 121 GLY ARG ASP CYS SEQRES 1 B 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 B 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 B 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 B 121 GLY ARG ASP CYS SEQRES 1 C 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 C 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 C 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 C 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 C 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 C 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 C 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 C 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 C 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 C 121 GLY ARG ASP CYS SEQRES 1 D 121 SER LEU VAL GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 D 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 D 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 D 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 D 121 LYS LEU THR ASN CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 D 121 TYR ASP TRP LYS ASN LYS THR ILE VAL CYS GLY GLU GLU SEQRES 7 D 121 ASN PRO CYS LEU LYS GLN LEU CYS GLU CYS ASP LYS ALA SEQRES 8 D 121 VAL ALA ILE CYS LEU ARG GLU ASN LYS GLY THR TYR ASN SEQRES 9 D 121 LYS LYS ARG ASP VAL TYR LEU LYS PRO PHE CYS ASP LYS SEQRES 10 D 121 GLY ARG ASP CYS HET PE4 A 134 24 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 5 PE4 C16 H34 O8 FORMUL 6 HOH *113(H2 O) HELIX 1 1 SER A 1 GLY A 15 1 14 HELIX 2 2 ASN A 17 GLY A 23 1 7 HELIX 3 3 ASP A 39 LEU A 58 1 17 HELIX 4 4 ASN A 88 ASN A 109 1 21 HELIX 5 5 LYS A 110 TYR A 113 5 4 HELIX 6 6 ASN A 114 ASP A 118 5 5 HELIX 7 7 LEU B 2 GLY B 15 1 13 HELIX 8 8 ASN B 17 GLY B 23 1 7 HELIX 9 9 ASP B 39 LYS B 57 1 16 HELIX 10 10 ASN B 88 ASN B 109 1 21 HELIX 11 11 LYS B 110 TYR B 113 5 4 HELIX 12 12 ASN B 114 ASP B 118 5 5 HELIX 13 13 LEU C 2 GLY C 15 1 13 HELIX 14 14 ASN C 17 GLY C 23 1 7 HELIX 15 15 ASP C 39 TYR C 52 1 14 HELIX 16 16 ASN C 88 ASN C 109 1 21 HELIX 17 17 LYS C 110 THR C 112 5 3 HELIX 18 18 LEU D 2 GLY D 15 1 13 HELIX 19 19 ASN D 17 GLY D 23 1 7 HELIX 20 20 ASP D 39 LYS D 57 1 16 HELIX 21 21 CYS D 91 ASN D 109 1 19 HELIX 22 22 LYS D 110 TYR D 113 5 4 SHEET 1 A 2 TYR A 75 LYS A 78 0 SHEET 2 A 2 THR A 81 CYS A 84 -1 O VAL A 83 N ASP A 76 SHEET 1 B 2 TYR B 75 LYS B 78 0 SHEET 2 B 2 THR B 81 CYS B 84 -1 O VAL B 83 N ASP B 76 SHEET 1 C 2 TYR C 75 TRP C 77 0 SHEET 2 C 2 ILE C 82 CYS C 84 -1 O VAL C 83 N ASP C 76 SHEET 1 D 2 ASP D 76 LYS D 78 0 SHEET 2 D 2 THR D 81 VAL D 83 -1 O THR D 81 N LYS D 78 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.31 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.29 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.37 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.21 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.29 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.27 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.28 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.39 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.24 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.30 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.20 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.37 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.35 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.48 SSBOND 15 CYS C 27 CYS C 126 1555 1555 2.29 SSBOND 16 CYS C 29 CYS C 45 1555 1555 2.48 SSBOND 17 CYS C 44 CYS C 105 1555 1555 2.21 SSBOND 18 CYS C 50 CYS C 133 1555 1555 2.43 SSBOND 19 CYS C 51 CYS C 98 1555 1555 2.36 SSBOND 20 CYS C 61 CYS C 91 1555 1555 2.43 SSBOND 21 CYS C 84 CYS C 96 1555 1555 2.39 SSBOND 22 CYS D 27 CYS D 126 1555 1555 2.43 SSBOND 23 CYS D 29 CYS D 45 1555 1555 2.41 SSBOND 24 CYS D 44 CYS D 105 1555 1555 2.28 SSBOND 25 CYS D 50 CYS D 133 1555 1555 2.33 SSBOND 26 CYS D 51 CYS D 98 1555 1555 2.39 SSBOND 27 CYS D 61 CYS D 91 1555 1555 2.36 SSBOND 28 CYS D 84 CYS D 96 1555 1555 2.30 CISPEP 1 GLU C 87 ASN C 88 0 22.61 CISPEP 2 CYS D 84 GLY D 85 0 1.45 CISPEP 3 PRO D 90 CYS D 91 0 25.63 SITE 1 AC1 10 LYS A 7 LEU A 10 GLN A 11 GLY A 15 SITE 2 AC1 10 TYR A 75 HOH A 145 LYS B 7 LEU B 10 SITE 3 AC1 10 GLN B 11 TYR B 75 CRYST1 57.593 125.848 65.327 90.00 105.91 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017363 0.000000 0.004949 0.00000 SCALE2 0.000000 0.007946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015917 0.00000