data_3T0V # _entry.id 3T0V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3T0V RCSB RCSB066895 WWPDB D_1000066895 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3T0W . unspecified PDB 3T0X . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3T0V _pdbx_database_status.recvd_initial_deposition_date 2011-07-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stanfield, R.' 1 'Senutovitch, N.' 2 'Bhattacharyya, S.' 3 'Rule, G.' 4 'Wilson, I.A.' 5 'Armitage, B.' 6 'Waggoner, A.S.' 7 'Berget, P.' 8 # _citation.id primary _citation.title 'A variable light domain fluorogen activating protein homodimerizes to activate dimethylindole red.' _citation.journal_abbrev Biochemistry _citation.journal_volume 51 _citation.page_first 2471 _citation.page_last 2485 _citation.year 2012 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22390683 _citation.pdbx_database_id_DOI 10.1021/bi201422g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Senutovitch, N.' 1 ? primary 'Stanfield, R.L.' 2 ? primary 'Bhattacharyya, S.' 3 ? primary 'Rule, G.S.' 4 ? primary 'Wilson, I.A.' 5 ? primary 'Armitage, B.A.' 6 ? primary 'Waggoner, A.S.' 7 ? primary 'Berget, P.B.' 8 ? # _cell.entry_id 3T0V _cell.length_a 83.663 _cell.length_b 93.639 _cell.length_c 30.573 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3T0V _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'immunoglobulin variable lambda domain' 13204.214 1 ? ? ? ? 2 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 1 ? ? ? ? 3 non-polymer syn 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL 634.751 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 7 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(PCA)PVLTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAI SGLRSEDEADYYCLSWDDSLNGWVFGGGTKVTVLDAASGADHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;QPVLTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLR SEDEADYYCLSWDDSLNGWVFGGGTKVTVLDAASGADHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PCA n 1 2 PRO n 1 3 VAL n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 SER n 1 8 PRO n 1 9 SER n 1 10 VAL n 1 11 SER n 1 12 GLY n 1 13 THR n 1 14 PRO n 1 15 GLY n 1 16 GLN n 1 17 LYS n 1 18 VAL n 1 19 THR n 1 20 ILE n 1 21 PHE n 1 22 CYS n 1 23 SER n 1 24 GLY n 1 25 SER n 1 26 SER n 1 27 SER n 1 28 ASN n 1 29 VAL n 1 30 GLU n 1 31 ASP n 1 32 ASN n 1 33 SER n 1 34 VAL n 1 35 TYR n 1 36 TRP n 1 37 TYR n 1 38 GLN n 1 39 GLN n 1 40 PHE n 1 41 PRO n 1 42 GLY n 1 43 THR n 1 44 THR n 1 45 PRO n 1 46 LYS n 1 47 VAL n 1 48 LEU n 1 49 ILE n 1 50 TYR n 1 51 ASN n 1 52 ASP n 1 53 ASP n 1 54 ARG n 1 55 ARG n 1 56 SER n 1 57 SER n 1 58 GLY n 1 59 VAL n 1 60 PRO n 1 61 ASP n 1 62 ARG n 1 63 PHE n 1 64 SER n 1 65 GLY n 1 66 SER n 1 67 LYS n 1 68 SER n 1 69 GLY n 1 70 THR n 1 71 SER n 1 72 ALA n 1 73 SER n 1 74 LEU n 1 75 ALA n 1 76 ILE n 1 77 SER n 1 78 GLY n 1 79 LEU n 1 80 ARG n 1 81 SER n 1 82 GLU n 1 83 ASP n 1 84 GLU n 1 85 ALA n 1 86 ASP n 1 87 TYR n 1 88 TYR n 1 89 CYS n 1 90 LEU n 1 91 SER n 1 92 TRP n 1 93 ASP n 1 94 ASP n 1 95 SER n 1 96 LEU n 1 97 ASN n 1 98 GLY n 1 99 TRP n 1 100 VAL n 1 101 PHE n 1 102 GLY n 1 103 GLY n 1 104 GLY n 1 105 THR n 1 106 LYS n 1 107 VAL n 1 108 THR n 1 109 VAL n 1 110 LEU n 1 111 ASP n 1 112 ALA n 1 113 ALA n 1 114 SER n 1 115 GLY n 1 116 ALA n 1 117 ASP n 1 118 HIS n 1 119 HIS n 1 120 HIS n 1 121 HIS n 1 122 HIS n 1 123 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain MachTI _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pAK400 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3T0V _struct_ref.pdbx_db_accession 3T0V _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3T0V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3T0V _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 119 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 119 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PE3 non-polymer . 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL 'POLYETHYLENE GLYCOL' 'C28 H58 O15' 634.751 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3T0V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '2M ammonium sulfate, 2% PEG 400, 0.1M Hepes, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2009-08-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3T0V _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 29.244 _reflns.d_resolution_high 1.45 _reflns.number_obs 21290 _reflns.number_all 21290 _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 4.3 _reflns.pdbx_netI_over_sigmaI 30.1 _reflns.B_iso_Wilson_estimate 15.1 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.48 _reflns_shell.percent_possible_all 79.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 31.7 _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 2.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 830 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3T0V _refine.ls_number_reflns_obs 21280 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.2 _refine.ls_d_res_high 1.451 _refine.ls_percent_reflns_obs 97.66 _refine.ls_R_factor_obs 0.1808 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1793 _refine.ls_R_factor_R_free 0.2083 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1090 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 3.8572 _refine.aniso_B[2][2] -1.2616 _refine.aniso_B[3][3] -2.5956 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.379 _refine.solvent_model_param_bsol 52.320 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.17 _refine.pdbx_overall_phase_error 21.93 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 845 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1023 _refine_hist.d_res_high 1.451 _refine_hist.d_res_low 29.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 947 ? 'X-RAY DIFFRACTION' f_angle_d 1.121 ? ? 1284 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 10.659 ? ? 356 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.075 ? ? 137 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 163 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.451 1.5165 2135 0.2573 84.00 0.2869 . . 112 . . . . 'X-RAY DIFFRACTION' . 1.5165 1.5965 2474 0.1888 98.00 0.2501 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.5965 1.6965 2572 0.1801 100.00 0.2357 . . 120 . . . . 'X-RAY DIFFRACTION' . 1.6965 1.8275 2533 0.1805 100.00 0.2597 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.8275 2.0113 2550 0.1879 100.00 0.2299 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.0113 2.3023 2581 0.1716 100.00 0.2074 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.3023 2.9002 2600 0.1770 100.00 0.1972 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.9002 29.2500 2745 0.1741 100.00 0.1853 . . 130 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3T0V _struct.title 'Unliganded fluorogen activating protein M8VL' _struct.pdbx_descriptor M8VL _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T0V _struct_keywords.pdbx_keywords 'DYE-BINDING PROTEIN' _struct_keywords.text 'immunoglobulin fold, fluorogen activation, dimethylindole red, DYE-BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 80 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 84 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 79 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 83 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 23 A CYS 88 1_555 ? ? ? ? ? ? ? 2.079 ? covale1 covale both ? A PCA 1 C ? ? ? 1_555 A PRO 2 N ? ? A PCA 1 A PRO 2 1_555 ? ? ? ? ? ? ? 1.338 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? GLN A 6 ? THR A 5 GLN A 6 A 2 VAL A 18 ? SER A 23 ? VAL A 19 SER A 24 A 3 SER A 71 ? ILE A 76 ? SER A 70 ILE A 75 A 4 PHE A 63 ? SER A 68 ? PHE A 62 SER A 67 B 1 VAL A 10 ? GLY A 12 ? VAL A 11 GLY A 13 B 2 ALA A 85 ? ASP A 93 ? ALA A 84 ASP A 92 B 3 VAL A 34 ? GLN A 39 ? VAL A 33 GLN A 38 B 4 LYS A 46 ? TYR A 50 ? LYS A 45 TYR A 49 B 5 ARG A 54 ? ARG A 55 ? ARG A 53 ARG A 54 C 1 VAL A 10 ? GLY A 12 ? VAL A 11 GLY A 13 C 2 ALA A 85 ? ASP A 93 ? ALA A 84 ASP A 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 5 ? N THR A 5 O SER A 23 ? O SER A 24 A 2 3 N VAL A 18 ? N VAL A 19 O ILE A 76 ? O ILE A 75 A 3 4 O SER A 71 ? O SER A 70 N SER A 68 ? N SER A 67 B 1 2 O VAL A 109 ? O VAL A 106 N ALA A 85 ? N ALA A 84 B 2 3 O TYR A 88 ? O TYR A 87 N TYR A 37 ? N TYR A 36 B 3 4 N TRP A 36 ? N TRP A 35 O LEU A 48 ? O LEU A 47 B 4 5 N TYR A 50 ? N TYR A 49 O ARG A 54 ? O ARG A 53 C 1 2 O VAL A 109 ? O VAL A 106 N ALA A 85 ? N ALA A 84 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE 1PE A 201' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE PE3 A 202' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 203' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 204' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 205' AC6 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE SO4 A 206' AC7 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE TRS A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TYR A 35 ? TYR A 34 . ? 4_555 ? 2 AC1 5 TYR A 37 ? TYR A 36 . ? 4_555 ? 3 AC1 5 LEU A 90 ? LEU A 89 . ? 4_555 ? 4 AC1 5 TRP A 99 ? TRP A 96 . ? 1_555 ? 5 AC1 5 PHE A 101 ? PHE A 98 . ? 4_555 ? 6 AC2 11 GLU A 30 ? GLU A 29 . ? 1_555 ? 7 AC2 11 ASP A 31 ? ASP A 30 . ? 1_555 ? 8 AC2 11 ASN A 32 ? ASN A 31 . ? 1_555 ? 9 AC2 11 SER A 33 ? SER A 32 . ? 1_555 ? 10 AC2 11 TYR A 35 ? TYR A 34 . ? 1_555 ? 11 AC2 11 PRO A 41 ? PRO A 40 . ? 1_554 ? 12 AC2 11 GLY A 42 ? GLY A 41 . ? 1_554 ? 13 AC2 11 ASP A 52 ? ASP A 51 . ? 1_555 ? 14 AC2 11 LYS A 67 ? LYS A 66 . ? 1_555 ? 15 AC2 11 TRP A 99 ? TRP A 96 . ? 1_555 ? 16 AC2 11 HOH I . ? HOH A 320 . ? 1_555 ? 17 AC3 4 PRO A 60 ? PRO A 59 . ? 1_555 ? 18 AC3 4 PHE A 63 ? PHE A 62 . ? 1_555 ? 19 AC3 4 HOH I . ? HOH A 325 . ? 1_555 ? 20 AC3 4 HOH I . ? HOH A 345 . ? 1_555 ? 21 AC4 6 SER A 9 ? SER A 9 . ? 6_554 ? 22 AC4 6 SER A 66 ? SER A 65 . ? 1_555 ? 23 AC4 6 SER A 71 ? SER A 70 . ? 1_555 ? 24 AC4 6 SER A 73 ? SER A 72 . ? 1_555 ? 25 AC4 6 HOH I . ? HOH A 317 . ? 1_555 ? 26 AC4 6 HOH I . ? HOH A 387 . ? 6_554 ? 27 AC5 2 GLN A 39 ? GLN A 38 . ? 1_555 ? 28 AC5 2 ASN A 97 A ASN A 95 . ? 4_555 ? 29 AC6 9 TYR A 50 ? TYR A 49 . ? 3_554 ? 30 AC6 9 TYR A 50 ? TYR A 49 . ? 1_555 ? 31 AC6 9 ARG A 54 ? ARG A 53 . ? 3_554 ? 32 AC6 9 ARG A 55 ? ARG A 54 . ? 1_555 ? 33 AC6 9 SER A 56 ? SER A 55 . ? 1_555 ? 34 AC6 9 SER A 57 ? SER A 56 . ? 1_555 ? 35 AC6 9 HOH I . ? HOH A 302 . ? 1_555 ? 36 AC6 9 HOH I . ? HOH A 360 . ? 3_554 ? 37 AC6 9 HOH I . ? HOH A 389 . ? 1_555 ? 38 AC7 9 SER A 9 ? SER A 9 . ? 1_555 ? 39 AC7 9 THR A 19 ? THR A 20 . ? 6_555 ? 40 AC7 9 SER A 68 ? SER A 67 . ? 1_556 ? 41 AC7 9 GLY A 69 ? GLY A 68 . ? 1_556 ? 42 AC7 9 LYS A 106 ? LYS A 103 . ? 1_555 ? 43 AC7 9 THR A 108 ? THR A 105 . ? 1_555 ? 44 AC7 9 HOH I . ? HOH A 331 . ? 1_555 ? 45 AC7 9 HOH I . ? HOH A 346 . ? 1_555 ? 46 AC7 9 HOH I . ? HOH A 413 . ? 1_556 ? # _database_PDB_matrix.entry_id 3T0V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3T0V _atom_sites.fract_transf_matrix[1][1] 0.011953 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010679 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032709 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PCA 1 1 1 PCA PCA A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 VAL 10 11 11 VAL VAL A . n A 1 11 SER 11 12 12 SER SER A . n A 1 12 GLY 12 13 13 GLY GLY A . n A 1 13 THR 13 14 14 THR THR A . n A 1 14 PRO 14 15 15 PRO PRO A . n A 1 15 GLY 15 16 16 GLY GLY A . n A 1 16 GLN 16 17 17 GLN GLN A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 VAL 18 19 19 VAL VAL A . n A 1 19 THR 19 20 20 THR THR A . n A 1 20 ILE 20 21 21 ILE ILE A . n A 1 21 PHE 21 22 22 PHE PHE A . n A 1 22 CYS 22 23 23 CYS CYS A . n A 1 23 SER 23 24 24 SER SER A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 SER 25 26 26 SER SER A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 SER 27 27 27 SER SER A A n A 1 28 ASN 28 27 27 ASN ASN A B n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 TRP 36 35 35 TRP TRP A . n A 1 37 TYR 37 36 36 TYR TYR A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 PHE 40 39 39 PHE PHE A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 VAL 47 46 46 VAL VAL A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 TYR 50 49 49 TYR TYR A . n A 1 51 ASN 51 50 50 ASN ASN A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 ARG 55 54 54 ARG ARG A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 PRO 60 59 59 PRO PRO A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 ARG 62 61 61 ARG ARG A . n A 1 63 PHE 63 62 62 PHE PHE A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 ALA 72 71 71 ALA ALA A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 SER 81 80 80 SER SER A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 TYR 88 87 87 TYR TYR A . n A 1 89 CYS 89 88 88 CYS CYS A . n A 1 90 LEU 90 89 89 LEU LEU A . n A 1 91 SER 91 90 90 SER SER A . n A 1 92 TRP 92 91 91 TRP TRP A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 ASN 97 95 96 ASN ASN A A n A 1 98 GLY 98 95 97 GLY GLY A B n A 1 99 TRP 99 96 98 TRP TRP A . n A 1 100 VAL 100 97 99 VAL VAL A . n A 1 101 PHE 101 98 100 PHE PHE A . n A 1 102 GLY 102 99 101 GLY GLY A . n A 1 103 GLY 103 100 102 GLY GLY A . n A 1 104 GLY 104 101 103 GLY GLY A . n A 1 105 THR 105 102 104 THR THR A . n A 1 106 LYS 106 103 105 LYS LYS A . n A 1 107 VAL 107 104 106 VAL VAL A . n A 1 108 THR 108 105 106 THR THR A . n A 1 109 VAL 109 106 107 VAL VAL A . n A 1 110 LEU 110 106 108 LEU LEU A A n A 1 111 ASP 111 107 109 ASP ASP A . n A 1 112 ALA 112 108 110 ALA ALA A . n A 1 113 ALA 113 109 111 ALA ALA A . n A 1 114 SER 114 110 ? ? ? A . n A 1 115 GLY 115 111 ? ? ? A . n A 1 116 ALA 116 112 ? ? ? A . n A 1 117 ASP 117 113 ? ? ? A . n A 1 118 HIS 118 114 ? ? ? A . n A 1 119 HIS 119 115 ? ? ? A . n A 1 120 HIS 120 116 ? ? ? A . n A 1 121 HIS 121 117 ? ? ? A . n A 1 122 HIS 122 118 ? ? ? A . n A 1 123 HIS 123 119 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE 1 201 1 1PE 1PE A . C 3 PE3 1 202 1 PE3 PE3 A . D 4 EDO 1 203 1 EDO EDO A . E 4 EDO 1 204 2 EDO EDO A . F 4 EDO 1 205 4 EDO EDO A . G 5 SO4 1 206 1 SO4 SO4 A . H 6 TRS 1 207 1 TRS TRS A . I 7 HOH 1 301 10 HOH HOH A . I 7 HOH 2 302 119 HOH HOH A . I 7 HOH 3 303 120 HOH HOH A . I 7 HOH 4 304 121 HOH HOH A . I 7 HOH 5 305 122 HOH HOH A . I 7 HOH 6 306 1 HOH HOH A . I 7 HOH 7 307 124 HOH HOH A . I 7 HOH 8 308 125 HOH HOH A . I 7 HOH 9 309 126 HOH HOH A . I 7 HOH 10 310 127 HOH HOH A . I 7 HOH 11 311 128 HOH HOH A . I 7 HOH 12 312 129 HOH HOH A . I 7 HOH 13 313 130 HOH HOH A . I 7 HOH 14 314 131 HOH HOH A . I 7 HOH 15 315 132 HOH HOH A . I 7 HOH 16 316 133 HOH HOH A . I 7 HOH 17 317 134 HOH HOH A . I 7 HOH 18 318 135 HOH HOH A . I 7 HOH 19 319 136 HOH HOH A . I 7 HOH 20 320 2 HOH HOH A . I 7 HOH 21 321 3 HOH HOH A . I 7 HOH 22 322 4 HOH HOH A . I 7 HOH 23 323 5 HOH HOH A . I 7 HOH 24 324 6 HOH HOH A . I 7 HOH 25 325 7 HOH HOH A . I 7 HOH 26 326 8 HOH HOH A . I 7 HOH 27 327 9 HOH HOH A . I 7 HOH 28 328 11 HOH HOH A . I 7 HOH 29 329 12 HOH HOH A . I 7 HOH 30 330 13 HOH HOH A . I 7 HOH 31 331 14 HOH HOH A . I 7 HOH 32 332 15 HOH HOH A . I 7 HOH 33 333 16 HOH HOH A . I 7 HOH 34 334 17 HOH HOH A . I 7 HOH 35 335 18 HOH HOH A . I 7 HOH 36 336 19 HOH HOH A . I 7 HOH 37 337 20 HOH HOH A . I 7 HOH 38 338 21 HOH HOH A . I 7 HOH 39 339 22 HOH HOH A . I 7 HOH 40 340 23 HOH HOH A . I 7 HOH 41 341 24 HOH HOH A . I 7 HOH 42 342 25 HOH HOH A . I 7 HOH 43 343 26 HOH HOH A . I 7 HOH 44 344 27 HOH HOH A . I 7 HOH 45 345 28 HOH HOH A . I 7 HOH 46 346 29 HOH HOH A . I 7 HOH 47 347 30 HOH HOH A . I 7 HOH 48 348 31 HOH HOH A . I 7 HOH 49 349 32 HOH HOH A . I 7 HOH 50 350 33 HOH HOH A . I 7 HOH 51 351 34 HOH HOH A . I 7 HOH 52 352 35 HOH HOH A . I 7 HOH 53 353 36 HOH HOH A . I 7 HOH 54 354 37 HOH HOH A . I 7 HOH 55 355 38 HOH HOH A . I 7 HOH 56 356 40 HOH HOH A . I 7 HOH 57 357 41 HOH HOH A . I 7 HOH 58 358 42 HOH HOH A . I 7 HOH 59 359 43 HOH HOH A . I 7 HOH 60 360 44 HOH HOH A . I 7 HOH 61 361 45 HOH HOH A . I 7 HOH 62 362 46 HOH HOH A . I 7 HOH 63 363 47 HOH HOH A . I 7 HOH 64 364 48 HOH HOH A . I 7 HOH 65 365 49 HOH HOH A . I 7 HOH 66 366 50 HOH HOH A . I 7 HOH 67 367 51 HOH HOH A . I 7 HOH 68 368 52 HOH HOH A . I 7 HOH 69 369 53 HOH HOH A . I 7 HOH 70 370 54 HOH HOH A . I 7 HOH 71 371 55 HOH HOH A . I 7 HOH 72 372 56 HOH HOH A . I 7 HOH 73 373 57 HOH HOH A . I 7 HOH 74 374 58 HOH HOH A . I 7 HOH 75 375 59 HOH HOH A . I 7 HOH 76 376 60 HOH HOH A . I 7 HOH 77 377 61 HOH HOH A . I 7 HOH 78 378 62 HOH HOH A . I 7 HOH 79 379 63 HOH HOH A . I 7 HOH 80 380 64 HOH HOH A . I 7 HOH 81 381 65 HOH HOH A . I 7 HOH 82 382 66 HOH HOH A . I 7 HOH 83 383 67 HOH HOH A . I 7 HOH 84 384 68 HOH HOH A . I 7 HOH 85 385 69 HOH HOH A . I 7 HOH 86 386 70 HOH HOH A . I 7 HOH 87 387 72 HOH HOH A . I 7 HOH 88 388 73 HOH HOH A . I 7 HOH 89 389 74 HOH HOH A . I 7 HOH 90 390 75 HOH HOH A . I 7 HOH 91 391 76 HOH HOH A . I 7 HOH 92 392 77 HOH HOH A . I 7 HOH 93 393 79 HOH HOH A . I 7 HOH 94 394 80 HOH HOH A . I 7 HOH 95 395 81 HOH HOH A . I 7 HOH 96 396 82 HOH HOH A . I 7 HOH 97 397 83 HOH HOH A . I 7 HOH 98 398 84 HOH HOH A . I 7 HOH 99 399 86 HOH HOH A . I 7 HOH 100 400 88 HOH HOH A . I 7 HOH 101 401 89 HOH HOH A . I 7 HOH 102 402 90 HOH HOH A . I 7 HOH 103 403 91 HOH HOH A . I 7 HOH 104 404 92 HOH HOH A . I 7 HOH 105 405 93 HOH HOH A . I 7 HOH 106 406 94 HOH HOH A . I 7 HOH 107 407 95 HOH HOH A . I 7 HOH 108 408 96 HOH HOH A . I 7 HOH 109 409 97 HOH HOH A . I 7 HOH 110 410 98 HOH HOH A . I 7 HOH 111 411 99 HOH HOH A . I 7 HOH 112 412 100 HOH HOH A . I 7 HOH 113 413 101 HOH HOH A . I 7 HOH 114 414 102 HOH HOH A . I 7 HOH 115 415 103 HOH HOH A . I 7 HOH 116 416 104 HOH HOH A . I 7 HOH 117 417 105 HOH HOH A . I 7 HOH 118 418 106 HOH HOH A . I 7 HOH 119 419 107 HOH HOH A . I 7 HOH 120 420 109 HOH HOH A . I 7 HOH 121 421 110 HOH HOH A . I 7 HOH 122 422 112 HOH HOH A . I 7 HOH 123 423 113 HOH HOH A . I 7 HOH 124 424 114 HOH HOH A . I 7 HOH 125 425 115 HOH HOH A . I 7 HOH 126 426 117 HOH HOH A . I 7 HOH 127 427 118 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-21 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2012-04-11 4 'Structure model' 2 0 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_poly 2 4 'Structure model' pdbx_struct_mod_residue 3 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 2 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 27 B ? -126.89 -89.13 2 1 ASP A 51 ? ? 74.12 -50.94 3 1 ASP A 52 ? ? -143.16 12.41 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 107 ? CG ? A ASP 111 CG 2 1 Y 1 A ASP 107 ? OD1 ? A ASP 111 OD1 3 1 Y 1 A ASP 107 ? OD2 ? A ASP 111 OD2 4 1 N 1 A PE3 202 ? O43 ? C PE3 1 O43 5 1 N 1 A PE3 202 ? C42 ? C PE3 1 C42 6 1 N 1 A PE3 202 ? C41 ? C PE3 1 C41 7 1 N 1 A PE3 202 ? O40 ? C PE3 1 O40 8 1 N 1 A PE3 202 ? C39 ? C PE3 1 C39 9 1 N 1 A PE3 202 ? C38 ? C PE3 1 C38 10 1 N 1 A PE3 202 ? O37 ? C PE3 1 O37 11 1 N 1 A PE3 202 ? C36 ? C PE3 1 C36 12 1 N 1 A PE3 202 ? C35 ? C PE3 1 C35 13 1 N 1 A PE3 202 ? O34 ? C PE3 1 O34 14 1 N 1 A PE3 202 ? C33 ? C PE3 1 C33 15 1 N 1 A PE3 202 ? C32 ? C PE3 1 C32 16 1 N 1 A PE3 202 ? O31 ? C PE3 1 O31 17 1 N 1 A PE3 202 ? C30 ? C PE3 1 C30 18 1 N 1 A PE3 202 ? C29 ? C PE3 1 C29 19 1 N 1 A PE3 202 ? O28 ? C PE3 1 O28 20 1 N 1 A PE3 202 ? C27 ? C PE3 1 C27 21 1 N 1 A PE3 202 ? C26 ? C PE3 1 C26 22 1 N 1 A PE3 202 ? O25 ? C PE3 1 O25 23 1 N 1 A PE3 202 ? C24 ? C PE3 1 C24 24 1 N 1 A PE3 202 ? C23 ? C PE3 1 C23 25 1 N 1 A PE3 202 ? O22 ? C PE3 1 O22 26 1 N 1 A PE3 202 ? C21 ? C PE3 1 C21 27 1 N 1 A PE3 202 ? C20 ? C PE3 1 C20 28 1 N 1 A PE3 202 ? O19 ? C PE3 1 O19 29 1 N 1 A PE3 202 ? C18 ? C PE3 1 C18 30 1 N 1 A PE3 202 ? C17 ? C PE3 1 C17 31 1 N 1 A PE3 202 ? O16 ? C PE3 1 O16 32 1 N 1 A PE3 202 ? C15 ? C PE3 1 C15 33 1 N 1 A PE3 202 ? C14 ? C PE3 1 C14 34 1 N 1 A PE3 202 ? C3 ? C PE3 1 C3 35 1 N 1 A PE3 202 ? C2 ? C PE3 1 C2 36 1 N 1 A PE3 202 ? O1 ? C PE3 1 O1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 110 ? A SER 114 2 1 Y 1 A GLY 111 ? A GLY 115 3 1 Y 1 A ALA 112 ? A ALA 116 4 1 Y 1 A ASP 113 ? A ASP 117 5 1 Y 1 A HIS 114 ? A HIS 118 6 1 Y 1 A HIS 115 ? A HIS 119 7 1 Y 1 A HIS 116 ? A HIS 120 8 1 Y 1 A HIS 117 ? A HIS 121 9 1 Y 1 A HIS 118 ? A HIS 122 10 1 Y 1 A HIS 119 ? A HIS 123 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PENTAETHYLENE GLYCOL' 1PE 3 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL PE3 4 1,2-ETHANEDIOL EDO 5 'SULFATE ION' SO4 6 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 7 water HOH #