HEADER DYE-BINDING PROTEIN 20-JUL-11 3T0X TITLE FLUOROGEN ACTIVATING PROTEIN M8VLA4(S55P) IN COMPLEX WITH TITLE 2 DIMETHYLINDOLE RED COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN VARIABLE LAMBDA DOMAIN M8VLA4(S55P); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: MACHTI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAK400 KEYWDS IMMUNOGLOBULIN FOLD, FLUOROGEN ACTIVATION, DIMETHYLINDOLE RED, DYE- KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.STANFIELD,N.SENUTOVITCH,S.BHATTACHARYYA,G.RULE,I.A.WILSON, AUTHOR 2 B.ARMITAGE,A.S.WAGGONER,P.BERGET REVDAT 5 20-NOV-24 3T0X 1 REMARK SHEET REVDAT 4 25-DEC-19 3T0X 1 SEQRES LINK REVDAT 3 11-APR-12 3T0X 1 JRNL REVDAT 2 28-MAR-12 3T0X 1 DBREF SEQRES REMARK REVDAT 1 21-MAR-12 3T0X 0 JRNL AUTH N.SENUTOVITCH,R.L.STANFIELD,S.BHATTACHARYYA,G.S.RULE, JRNL AUTH 2 I.A.WILSON,B.A.ARMITAGE,A.S.WAGGONER,P.B.BERGET JRNL TITL A VARIABLE LIGHT DOMAIN FLUOROGEN ACTIVATING PROTEIN JRNL TITL 2 HOMODIMERIZES TO ACTIVATE DIMETHYLINDOLE RED. JRNL REF BIOCHEMISTRY V. 51 2471 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22390683 JRNL DOI 10.1021/BI201422G REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3464 - 3.7416 1.00 2907 140 0.1802 0.1860 REMARK 3 2 3.7416 - 2.9702 1.00 2746 140 0.1974 0.2428 REMARK 3 3 2.9702 - 2.5949 1.00 2687 162 0.2230 0.2832 REMARK 3 4 2.5949 - 2.3577 1.00 2672 170 0.2461 0.2810 REMARK 3 5 2.3577 - 2.1887 1.00 2683 129 0.2361 0.2959 REMARK 3 6 2.1887 - 2.0597 1.00 2648 160 0.2417 0.2837 REMARK 3 7 2.0597 - 1.9600 0.97 2572 147 0.2662 0.2796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 56.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39270 REMARK 3 B22 (A**2) : 0.39270 REMARK 3 B33 (A**2) : -0.78550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1805 REMARK 3 ANGLE : 1.446 2456 REMARK 3 CHIRALITY : 0.086 257 REMARK 3 PLANARITY : 0.008 313 REMARK 3 DIHEDRAL : 15.372 635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 25.4424 7.9937 -14.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1078 REMARK 3 T33: 0.1404 T12: 0.0102 REMARK 3 T13: 0.0106 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.0792 L22: 0.2041 REMARK 3 L33: 0.1144 L12: -0.0446 REMARK 3 L13: 0.0346 L23: 0.0667 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: 0.0179 S13: -0.0347 REMARK 3 S21: -0.0814 S22: -0.0172 S23: -0.0090 REMARK 3 S31: -0.0653 S32: -0.0771 S33: -0.0633 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 22.0525 -12.7106 -2.2287 REMARK 3 T TENSOR REMARK 3 T11: 0.4730 T22: -0.1328 REMARK 3 T33: 0.1294 T12: -0.0857 REMARK 3 T13: -0.0282 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4199 L22: 0.6837 REMARK 3 L33: 0.6713 L12: -0.2841 REMARK 3 L13: -0.1073 L23: -0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0838 S12: -0.0347 S13: -0.0145 REMARK 3 S21: 0.8459 S22: -0.4985 S23: -0.2500 REMARK 3 S31: 0.0751 S32: -0.0015 S33: -0.7402 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 37.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 8.70000 REMARK 200 FOR THE DATA SET : 35.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 54.9000 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M AMMONIUM SULFATE, 30% PEG 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.17350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.74700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.74700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.26025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.74700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.74700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.08675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.74700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.74700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.26025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.74700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.74700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.08675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.17350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 108 REMARK 465 ALA A 109 REMARK 465 SER A 110 REMARK 465 GLY A 111 REMARK 465 ALA A 112 REMARK 465 ASP A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 LEU B 106A REMARK 465 ASP B 107 REMARK 465 ALA B 108 REMARK 465 ALA B 109 REMARK 465 SER B 110 REMARK 465 GLY B 111 REMARK 465 ALA B 112 REMARK 465 ASP B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 30 OD2 ASP A 93 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 29 CD GLU A 29 OE2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27B -107.20 -127.96 REMARK 500 ASP A 51 -49.61 77.17 REMARK 500 LEU A 106A -142.97 -90.49 REMARK 500 VAL B 11 100.90 -161.71 REMARK 500 ASN B 27B -86.82 -110.63 REMARK 500 ASP B 51 -47.16 83.82 REMARK 500 ASP B 60 0.73 -47.22 REMARK 500 LEU B 78 171.16 -48.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIW A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T0V RELATED DB: PDB REMARK 900 RELATED ID: 3T0W RELATED DB: PDB DBREF 3T0X A 1 119 PDB 3T0X 3T0X 1 119 DBREF 3T0X B 1 119 PDB 3T0X 3T0X 1 119 SEQRES 1 A 123 PCA PRO VAL LEU THR GLN SER PRO SER VAL SER GLY THR SEQRES 2 A 123 PRO GLY GLN LYS VAL THR ILE PHE CYS SER GLY SER SER SEQRES 3 A 123 SER ASN VAL GLU ASP ASN SER VAL TYR TRP TYR GLN GLN SEQRES 4 A 123 PHE PRO GLY THR THR PRO LYS VAL LEU ILE TYR ASN ASP SEQRES 5 A 123 ASP ARG ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 A 123 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 A 123 LEU ARG SER GLU ASP GLU ALA ASP TYR TYR CYS LEU SER SEQRES 8 A 123 TRP ASP ASP SER LEU ASN GLY TRP VAL PHE GLY GLY GLY SEQRES 9 A 123 THR LYS VAL THR VAL LEU ASP ALA ALA SER GLY ALA ASP SEQRES 10 A 123 HIS HIS HIS HIS HIS HIS SEQRES 1 B 123 PCA PRO VAL LEU THR GLN SER PRO SER VAL SER GLY THR SEQRES 2 B 123 PRO GLY GLN LYS VAL THR ILE PHE CYS SER GLY SER SER SEQRES 3 B 123 SER ASN VAL GLU ASP ASN SER VAL TYR TRP TYR GLN GLN SEQRES 4 B 123 PHE PRO GLY THR THR PRO LYS VAL LEU ILE TYR ASN ASP SEQRES 5 B 123 ASP ARG ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 B 123 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 B 123 LEU ARG SER GLU ASP GLU ALA ASP TYR TYR CYS LEU SER SEQRES 8 B 123 TRP ASP ASP SER LEU ASN GLY TRP VAL PHE GLY GLY GLY SEQRES 9 B 123 THR LYS VAL THR VAL LEU ASP ALA ALA SER GLY ALA ASP SEQRES 10 B 123 HIS HIS HIS HIS HIS HIS MODRES 3T0X PCA A 1 GLN PYROGLUTAMIC ACID MODRES 3T0X PCA B 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET PCA B 1 8 HET DIW A 201 50 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET SO4 B 201 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM DIW 1-(3-SULFOPROPYL)-4-[(1E,3E)-3-(1,3,3-TRIMETHYL-1,3- HETNAM 2 DIW DIHYDRO-2H-INDOL-2-YLIDENE)PROP-1-EN-1-YL]QUINOLINIUM HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 DIW C26 H29 N2 O3 S 1+ FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 SO4 O4 S 2- FORMUL 12 HOH *136(H2 O) HELIX 1 1 ARG A 79 GLU A 83 5 5 HELIX 2 2 ARG B 79 GLU B 83 5 5 SHEET 1 A 4 SER A 9 GLY A 13 0 SHEET 2 A 4 ALA A 84 ASP A 92 -1 N ALA A 84 O VAL A 106 SHEET 3 A 4 VAL A 33 GLN A 38 -1 N GLN A 38 O ASP A 85 SHEET 4 A 4 LYS A 45 ILE A 48 -1 O LYS A 45 N GLN A 37 SHEET 1 B 2 SER A 9 GLY A 13 0 SHEET 2 B 2 ALA A 84 ASP A 92 -1 N ALA A 84 O VAL A 106 SHEET 1 C 3 LYS A 18 SER A 24 0 SHEET 2 C 3 SER A 70 SER A 76 -1 O ILE A 75 N VAL A 19 SHEET 3 C 3 PHE A 62 SER A 67 -1 N SER A 67 O SER A 70 SHEET 1 D 4 SER B 9 SER B 12 0 SHEET 2 D 4 ASP B 85 ASP B 92 -1 SHEET 3 D 4 TYR B 34 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 4 D 4 LYS B 45 ILE B 48 -1 O LYS B 45 N GLN B 37 SHEET 1 E 2 SER B 9 SER B 12 0 SHEET 2 E 2 ASP B 85 ASP B 92 -1 SHEET 1 F 3 VAL B 19 SER B 24 0 SHEET 2 F 3 SER B 70 ILE B 75 -1 O ALA B 71 N CYS B 23 SHEET 3 F 3 PHE B 62 SER B 67 -1 N SER B 63 O ALA B 74 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.06 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.05 LINK C PCA A 1 N PRO A 2 1555 1555 1.34 LINK C PCA B 1 N PRO B 2 1555 1555 1.34 SITE 1 AC1 14 TYR A 34 TYR A 49 ARG A 53 PRO A 55 SITE 2 AC1 14 SER A 56 LEU A 89 TRP A 96 HOH A 317 SITE 3 AC1 14 TYR B 34 TYR B 49 PRO B 55 SER B 56 SITE 4 AC1 14 TRP B 96 SO4 B 201 SITE 1 AC2 6 SER A 63 GLY A 64 SER A 65 SER A 72 SITE 2 AC2 6 ALA A 74 HOH B 340 SITE 1 AC3 7 GLN A 37 LYS A 45 PRO A 59 ARG A 61 SITE 2 AC3 7 PHE A 62 GLU A 81 ASP A 82 SITE 1 AC4 9 SER A 65 LYS A 66 SER A 67 SER A 70 SITE 2 AC4 9 ALA A 71 SER A 72 THR B 5 SER B 24 SITE 3 AC4 9 SER B 94 SITE 1 AC5 5 GLN A 38 PRO A 40 ASP A 85 HOH A 306 SITE 2 AC5 5 HOH A 380 SITE 1 AC6 5 PHE B 22 SER B 65 LYS B 66 SER B 70 SITE 2 AC6 5 SER B 72 SITE 1 AC7 2 SER A 80 HOH A 325 SITE 1 AC8 5 TYR A 36 TYR A 87 PHE A 98 HOH A 321 SITE 2 AC8 5 HOH A 339 SITE 1 AC9 6 PRO A 55 DIW A 201 ASN B 50 HOH B 309 SITE 2 AC9 6 HOH B 311 HOH B 326 CRYST1 83.494 83.494 76.347 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013098 0.00000 CONECT 1 2 5 CONECT 2 1 3 7 CONECT 3 2 4 CONECT 4 3 5 CONECT 5 1 4 6 CONECT 6 5 CONECT 7 2 8 9 CONECT 8 7 CONECT 9 7 CONECT 157 678 CONECT 678 157 CONECT 847 848 851 CONECT 848 847 849 853 CONECT 849 848 850 CONECT 850 849 851 CONECT 851 847 850 852 CONECT 852 851 CONECT 853 848 854 855 CONECT 854 853 CONECT 855 853 CONECT 1003 1526 CONECT 1526 1003 CONECT 1679 1681 1720 CONECT 1680 1681 1684 1726 CONECT 1681 1679 1680 1682 CONECT 1682 1681 1683 1719 CONECT 1683 1682 1684 1685 CONECT 1684 1680 1683 1717 1718 CONECT 1685 1683 1686 CONECT 1686 1685 1687 1688 CONECT 1687 1686 1689 CONECT 1688 1686 1690 CONECT 1689 1687 1691 1699 CONECT 1690 1688 1692 1700 CONECT 1691 1689 1693 1707 CONECT 1692 1690 1694 1708 CONECT 1693 1691 1695 1701 CONECT 1694 1692 1696 1702 CONECT 1695 1693 1697 1709 CONECT 1696 1694 1698 1710 CONECT 1697 1695 1699 CONECT 1698 1696 1700 CONECT 1699 1689 1697 CONECT 1700 1690 1698 CONECT 1701 1693 1703 CONECT 1702 1694 1704 CONECT 1703 1701 1705 CONECT 1704 1702 1706 CONECT 1705 1703 1707 CONECT 1706 1704 1708 CONECT 1707 1691 1705 CONECT 1708 1692 1706 CONECT 1709 1695 1711 CONECT 1710 1696 1712 CONECT 1711 1709 1713 CONECT 1712 1710 1714 CONECT 1713 1711 1715 CONECT 1714 1712 1716 CONECT 1715 1713 1721 1724 1727 CONECT 1716 1714 1722 1725 1728 CONECT 1717 1684 CONECT 1718 1684 CONECT 1719 1682 CONECT 1720 1679 1723 CONECT 1721 1715 CONECT 1722 1716 CONECT 1723 1720 1726 CONECT 1724 1715 CONECT 1725 1716 CONECT 1726 1680 1723 CONECT 1727 1715 CONECT 1728 1716 CONECT 1729 1730 1731 CONECT 1730 1729 CONECT 1731 1729 1732 CONECT 1732 1731 CONECT 1733 1734 1735 CONECT 1734 1733 CONECT 1735 1733 1736 CONECT 1736 1735 CONECT 1737 1738 1739 CONECT 1738 1737 CONECT 1739 1737 1740 CONECT 1740 1739 CONECT 1741 1742 1743 CONECT 1742 1741 CONECT 1743 1741 1744 CONECT 1744 1743 CONECT 1745 1746 1747 CONECT 1746 1745 CONECT 1747 1745 1748 CONECT 1748 1747 CONECT 1749 1750 1751 CONECT 1750 1749 CONECT 1751 1749 1752 CONECT 1752 1751 CONECT 1753 1754 1755 CONECT 1754 1753 CONECT 1755 1753 1756 CONECT 1756 1755 CONECT 1757 1758 1759 1760 1761 CONECT 1758 1757 CONECT 1759 1757 CONECT 1760 1757 CONECT 1761 1757 MASTER 372 0 11 2 18 0 20 6 1863 2 105 20 END