HEADER HYDROLASE/SIGNALING PROTEIN 21-JUL-11 3T12 TITLE MGLA IN COMPLEX WITH MGLB IN TRANSITION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLIDING PROTEIN MGLA; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.5.2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLIDING PROTEIN MGLB; COMPND 8 CHAIN: B, C; COMPND 9 FRAGMENT: UNP RESIDUES 6-139; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA1132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEXET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 13 ORGANISM_TAXID: 300852; SOURCE 14 STRAIN: HB8; SOURCE 15 GENE: TTHA1131; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEXET KEYWDS G-DOMAIN CONTAINING PROTEIN, BACTERIAL POLARITY, MOTILITY, KEYWDS 2 HOMODIMERIC GAP PROTEIN, POLE LOCALISATION, ALPHA/BETA PROTEINS, KEYWDS 3 GTPASE, HYDROLASE-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.MIERTZSCHKE,I.R.VETTER,C.KOERNER,A.WITTINGHOFER REVDAT 3 13-SEP-23 3T12 1 REMARK SEQADV LINK REVDAT 2 02-NOV-11 3T12 1 JRNL REVDAT 1 31-AUG-11 3T12 0 JRNL AUTH M.MIERTZSCHKE,C.KOERNER,I.R.VETTER,D.KEILBERG,E.HOT, JRNL AUTH 2 S.LEONARDY,L.SOGAARD-ANDERSEN,A.WITTINGHOFER JRNL TITL STRUCTURAL ANALYSIS OF THE RAS-LIKE G PROTEIN MGLA AND ITS JRNL TITL 2 COGNATE GAP MGLB AND IMPLICATIONS FOR BACTERIAL POLARITY. JRNL REF EMBO J. V. 30 4185 2011 JRNL REFN ISSN 0261-4189 JRNL PMID 21847100 JRNL DOI 10.1038/EMBOJ.2011.291 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.81000 REMARK 3 B22 (A**2) : -3.27000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3532 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4814 ; 2.048 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;37.456 ;23.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;16.928 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;24.017 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 561 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2637 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2217 ; 1.326 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3544 ; 2.348 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1315 ; 3.821 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1262 ; 6.107 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32905 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1J3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS, 15% PEG 8000 , REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.25000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.25000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 153 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 VAL A 67 REMARK 465 LYS A 68 REMARK 465 GLY A 69 REMARK 465 PHE A 70 REMARK 465 ALA A 193 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 ALA B 138 REMARK 465 ASN B 139 REMARK 465 GLY C 4 REMARK 465 ALA C 138 REMARK 465 ASN C 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 165 O HOH B 270 1.15 REMARK 500 O HOH A 205 O HOH A 266 1.42 REMARK 500 O VAL B 19 O HOH B 163 1.48 REMARK 500 F4 ALF A 200 O HOH A 239 1.66 REMARK 500 O HOH A 201 O HOH A 273 1.67 REMARK 500 O2B GDP A 197 O HOH A 240 1.71 REMARK 500 N THR B 23 O HOH B 163 1.77 REMARK 500 O3B GDP A 197 AL ALF A 200 1.87 REMARK 500 ND1 HIS B 44 O HOH B 140 1.89 REMARK 500 F2 ALF A 200 O HOH A 239 1.95 REMARK 500 O HOH A 214 O HOH A 278 1.96 REMARK 500 O HOH A 240 O HOH A 256 1.97 REMARK 500 N ALA A 112 O HOH A 201 2.06 REMARK 500 O ALA B 50 O HOH B 203 2.10 REMARK 500 O HOH A 234 O HOH A 268 2.12 REMARK 500 O HOH B 282 O HOH C 287 2.16 REMARK 500 AL ALF A 200 O HOH A 209 2.16 REMARK 500 O HOH A 234 O HOH A 237 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 MG MG A 199 MG MG B 1 4555 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 152 CG GLU A 152 CD 0.101 REMARK 500 GLU C 135 CD GLU C 135 OE1 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 79 CG1 - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU A 93 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 143 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 81 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG C 37 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG C 37 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP C 57 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -61.88 -123.27 REMARK 500 ARG B 81 162.67 178.44 REMARK 500 ASP B 110 -169.13 -118.78 REMARK 500 LEU C 6 105.27 -160.99 REMARK 500 ARG C 81 144.00 -173.80 REMARK 500 ALA C 99 70.23 -117.03 REMARK 500 ASP C 110 -168.99 -119.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 198 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 THR A 54 OG1 80.6 REMARK 620 3 GDP A 197 O2B 97.2 171.4 REMARK 620 4 HOH A 222 O 86.4 88.7 82.8 REMARK 620 5 HOH A 240 O 115.0 138.4 50.0 128.6 REMARK 620 6 HOH A 256 O 92.0 87.5 101.0 176.0 55.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T1O RELATED DB: PDB REMARK 900 RELATED ID: 3T1Q RELATED DB: PDB REMARK 900 RELATED ID: 3T1R RELATED DB: PDB REMARK 900 RELATED ID: 3T1S RELATED DB: PDB REMARK 900 RELATED ID: 3T1T RELATED DB: PDB REMARK 900 RELATED ID: 3T1V RELATED DB: PDB REMARK 900 RELATED ID: 3T1X RELATED DB: PDB DBREF 3T12 A 1 196 UNP Q5SJ82 Q5SJ82_THET8 1 196 DBREF 3T12 B 6 139 UNP Q5SJ83 Q5SJ83_THET8 6 139 DBREF 3T12 C 6 139 UNP Q5SJ83 Q5SJ83_THET8 6 139 SEQADV 3T12 GLY A -1 UNP Q5SJ82 EXPRESSION TAG SEQADV 3T12 SER A 0 UNP Q5SJ82 EXPRESSION TAG SEQADV 3T12 GLY B 4 UNP Q5SJ83 EXPRESSION TAG SEQADV 3T12 SER B 5 UNP Q5SJ83 EXPRESSION TAG SEQADV 3T12 ALA B 14 UNP Q5SJ83 GLU 14 ENGINEERED MUTATION SEQADV 3T12 ALA B 15 UNP Q5SJ83 ARG 15 ENGINEERED MUTATION SEQADV 3T12 SER B 65 UNP Q5SJ83 GLY 65 VARIANT SEQADV 3T12 ALA B 124 UNP Q5SJ83 ARG 124 ENGINEERED MUTATION SEQADV 3T12 ALA B 127 UNP Q5SJ83 GLU 127 ENGINEERED MUTATION SEQADV 3T12 ALA B 131 UNP Q5SJ83 ARG 131 ENGINEERED MUTATION SEQADV 3T12 GLY C 4 UNP Q5SJ83 EXPRESSION TAG SEQADV 3T12 SER C 5 UNP Q5SJ83 EXPRESSION TAG SEQADV 3T12 ALA C 14 UNP Q5SJ83 GLU 14 ENGINEERED MUTATION SEQADV 3T12 ALA C 15 UNP Q5SJ83 ARG 15 ENGINEERED MUTATION SEQADV 3T12 SER C 65 UNP Q5SJ83 GLY 65 VARIANT SEQADV 3T12 ALA C 124 UNP Q5SJ83 ARG 124 ENGINEERED MUTATION SEQADV 3T12 ALA C 127 UNP Q5SJ83 GLU 127 ENGINEERED MUTATION SEQADV 3T12 ALA C 131 UNP Q5SJ83 ARG 131 ENGINEERED MUTATION SEQRES 1 A 198 GLY SER MET SER THR ILE ASN PHE ALA ASN ARG GLU ILE SEQRES 2 A 198 ASN PHE LYS ILE VAL TYR TYR GLY PRO GLY LEU SER GLY SEQRES 3 A 198 LYS THR THR ASN LEU LYS TRP ILE TYR SER LYS VAL PRO SEQRES 4 A 198 GLU GLY ARG LYS GLY GLU MET VAL SER LEU ALA THR GLU SEQRES 5 A 198 ASP GLU ARG THR LEU PHE PHE ASP PHE LEU PRO LEU ASP SEQRES 6 A 198 ILE GLY GLU VAL LYS GLY PHE LYS THR ARG PHE HIS LEU SEQRES 7 A 198 TYR THR VAL PRO GLY GLN VAL PHE TYR ASN ALA SER ARG SEQRES 8 A 198 LYS LEU ILE LEU ARG GLY VAL ASP GLY ILE VAL PHE VAL SEQRES 9 A 198 ALA ASP SER ALA PRO ASN ARG LEU ARG ALA ASN ALA GLU SEQRES 10 A 198 SER MET ARG ASN MET ARG GLU ASN LEU ALA GLU TYR GLY SEQRES 11 A 198 LEU THR LEU ASP ASP VAL PRO ILE VAL ILE GLN VAL ASN SEQRES 12 A 198 LYS ARG ASP LEU PRO ASP ALA LEU PRO VAL GLU MET VAL SEQRES 13 A 198 ARG ALA VAL VAL ASP PRO GLU GLY LYS PHE PRO VAL LEU SEQRES 14 A 198 GLU ALA VAL ALA THR GLU GLY LYS GLY VAL PHE GLU THR SEQRES 15 A 198 LEU LYS GLU VAL SER ARG LEU VAL LEU ALA ARG VAL ALA SEQRES 16 A 198 GLY GLY SER SEQRES 1 B 136 GLY SER LEU VAL LEU TYR GLY ALA PRO TYR ALA ALA ALA SEQRES 2 B 136 VAL GLU VAL LEU GLU GLU THR LEU ARG GLU THR GLY ALA SEQRES 3 B 136 ARG TYR ALA LEU LEU ILE ASP ARG LYS GLY PHE VAL LEU SEQRES 4 B 136 ALA HIS LYS GLU ALA LEU TRP ALA PRO LYS PRO PRO PRO SEQRES 5 B 136 LEU ASP THR LEU ALA THR LEU VAL ALA SER ASN ALA ALA SEQRES 6 B 136 ALA THR GLN ALA LEU ALA LYS LEU LEU GLY GLU ALA ARG SEQRES 7 B 136 PHE GLN GLU GLU VAL HIS GLN GLY GLU ARG MET GLY LEU SEQRES 8 B 136 TYR VAL ASP GLU ALA GLY GLU HIS ALA LEU LEU VAL LEU SEQRES 9 B 136 VAL PHE ASP GLU THR ALA PRO LEU GLY LYS VAL LYS LEU SEQRES 10 B 136 HIS GLY LYS ALA ALA ALA ALA ALA LEU ALA ALA ILE ALA SEQRES 11 B 136 GLU GLU ALA LEU ALA ASN SEQRES 1 C 136 GLY SER LEU VAL LEU TYR GLY ALA PRO TYR ALA ALA ALA SEQRES 2 C 136 VAL GLU VAL LEU GLU GLU THR LEU ARG GLU THR GLY ALA SEQRES 3 C 136 ARG TYR ALA LEU LEU ILE ASP ARG LYS GLY PHE VAL LEU SEQRES 4 C 136 ALA HIS LYS GLU ALA LEU TRP ALA PRO LYS PRO PRO PRO SEQRES 5 C 136 LEU ASP THR LEU ALA THR LEU VAL ALA SER ASN ALA ALA SEQRES 6 C 136 ALA THR GLN ALA LEU ALA LYS LEU LEU GLY GLU ALA ARG SEQRES 7 C 136 PHE GLN GLU GLU VAL HIS GLN GLY GLU ARG MET GLY LEU SEQRES 8 C 136 TYR VAL ASP GLU ALA GLY GLU HIS ALA LEU LEU VAL LEU SEQRES 9 C 136 VAL PHE ASP GLU THR ALA PRO LEU GLY LYS VAL LYS LEU SEQRES 10 C 136 HIS GLY LYS ALA ALA ALA ALA ALA LEU ALA ALA ILE ALA SEQRES 11 C 136 GLU GLU ALA LEU ALA ASN HET GDP A 197 28 HET MG A 198 1 HET MG A 199 1 HET ALF A 200 5 HET MG B 1 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ALF TETRAFLUOROALUMINATE ION FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 MG 3(MG 2+) FORMUL 7 ALF AL F4 1- FORMUL 9 HOH *192(H2 O) HELIX 1 1 GLY A 24 VAL A 36 1 13 HELIX 2 2 GLN A 82 PHE A 84 5 3 HELIX 3 3 TYR A 85 ARG A 94 1 10 HELIX 4 4 ALA A 106 ASN A 108 5 3 HELIX 5 5 ARG A 109 TYR A 127 1 19 HELIX 6 6 PRO A 150 ASP A 159 1 10 HELIX 7 7 VAL A 170 GLY A 174 5 5 HELIX 8 8 GLY A 176 ARG A 191 1 16 HELIX 9 9 TYR B 9 GLY B 28 1 20 HELIX 10 10 PRO B 55 LEU B 77 1 23 HELIX 11 11 PRO B 114 ALA B 136 1 23 HELIX 12 12 TYR C 9 GLY C 28 1 20 HELIX 13 13 PRO C 55 LEU C 77 1 23 HELIX 14 14 PRO C 114 GLU C 135 1 22 SHEET 1 A 7 VAL A 45 ALA A 48 0 SHEET 2 A 7 THR A 54 ASP A 63 -1 O LEU A 55 N LEU A 47 SHEET 3 A 7 ARG A 73 THR A 78 -1 O LEU A 76 N LEU A 60 SHEET 4 A 7 ASN A 12 TYR A 18 1 N PHE A 13 O HIS A 75 SHEET 5 A 7 GLY A 98 ASP A 104 1 O VAL A 102 N TYR A 18 SHEET 6 A 7 ILE A 136 ASN A 141 1 O GLN A 139 N PHE A 101 SHEET 7 A 7 VAL A 166 GLU A 168 1 O LEU A 167 N VAL A 140 SHEET 1 B 5 VAL B 41 GLU B 46 0 SHEET 2 B 5 TYR B 31 ASP B 36 -1 N LEU B 34 O ALA B 43 SHEET 3 B 5 ALA B 103 PHE B 109 -1 O VAL B 106 N LEU B 33 SHEET 4 B 5 GLY B 93 GLU B 98 -1 N ASP B 97 O LEU B 105 SHEET 5 B 5 GLU B 85 GLN B 88 -1 N GLU B 85 O VAL B 96 SHEET 1 C 5 VAL C 41 GLU C 46 0 SHEET 2 C 5 TYR C 31 ASP C 36 -1 N LEU C 34 O ALA C 43 SHEET 3 C 5 ALA C 103 PHE C 109 -1 O LEU C 104 N ILE C 35 SHEET 4 C 5 GLY C 93 GLU C 98 -1 N TYR C 95 O LEU C 107 SHEET 5 C 5 GLU C 85 GLN C 88 -1 N HIS C 87 O LEU C 94 LINK OG1 THR A 26 MG MG A 198 1555 1555 2.17 LINK OG1 THR A 54 MG MG A 198 1555 1555 2.03 LINK O2B GDP A 197 MG MG A 198 1555 1555 1.98 LINK MG MG A 198 O HOH A 222 1555 1555 1.96 LINK MG MG A 198 O HOH A 240 1555 1555 2.06 LINK MG MG A 198 O HOH A 256 1555 1555 2.19 SITE 1 AC1 18 LEU A 22 SER A 23 GLY A 24 LYS A 25 SITE 2 AC1 18 THR A 26 THR A 27 ASN A 141 LYS A 142 SITE 3 AC1 18 ASP A 144 VAL A 170 ALA A 171 THR A 172 SITE 4 AC1 18 MG A 198 ALF A 200 HOH A 203 HOH A 222 SITE 5 AC1 18 HOH A 240 HOH A 280 SITE 1 AC2 7 THR A 26 THR A 54 GDP A 197 ALF A 200 SITE 2 AC2 7 HOH A 222 HOH A 240 HOH A 256 SITE 1 AC3 4 ARG A 118 MG B 1 LYS B 45 GLU B 46 SITE 1 AC4 17 GLY A 21 LEU A 22 LYS A 25 ARG A 53 SITE 2 AC4 17 THR A 54 VAL A 79 PRO A 80 GLY A 81 SITE 3 AC4 17 GLN A 82 GDP A 197 MG A 198 HOH A 203 SITE 4 AC4 17 HOH A 209 HOH A 222 HOH A 239 HOH A 240 SITE 5 AC4 17 HOH A 256 SITE 1 AC5 3 ARG A 118 MG A 199 GLU B 46 CRYST1 106.500 174.200 69.200 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014451 0.00000