HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-JUL-11 3T1A TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (K103N MUTANT) IN TITLE 2 COMPLEX WITH INHIBITOR M05 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 588-1147; COMPND 5 SYNONYM: REVERSE TRANSCRIPTASE/RIBONUCLEASE H, EXORIBONUCLEASE H; COMPND 6 EC: 2.7.7.49, 2.7.7.7, 3.1.26.13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIV-1 M:B_HXB2R; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11706; SOURCE 5 STRAIN: HXB2; SOURCE 6 GENE: GAG-POL, HIV-1 POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HIV-1 REVERSE TRANSCRIPTASE, NON-NUCLEOSIDE INHIBITION, KEYWDS 2 NUCLEOTIDYLTRANFERASE, HIV-1, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAN,J.REID REVDAT 4 13-MAR-24 3T1A 1 SOURCE REVDAT 3 28-FEB-24 3T1A 1 REMARK SEQADV REVDAT 2 01-FEB-12 3T1A 1 JRNL REVDAT 1 26-OCT-11 3T1A 0 JRNL AUTH R.GOMEZ,S.J.JOLLY,T.WILLIAMS,J.P.VACCA,M.TORRENT, JRNL AUTH 2 G.MCGAUGHEY,M.T.LAI,P.FELOCK,V.MUNSHI,D.DISTEFANO,J.FLYNN, JRNL AUTH 3 M.MILLER,Y.YAN,J.REID,R.SANCHEZ,Y.LIANG,B.PATON,B.L.WAN, JRNL AUTH 4 N.ANTHONY JRNL TITL DESIGN AND SYNTHESIS OF CONFORMATIONALLY CONSTRAINED JRNL TITL 2 INHIBITORS OF NON-NUCLEOSIDE REVERSE TRANSCRIPTASE. JRNL REF J.MED.CHEM. V. 54 7920 2011 JRNL REFN ISSN 0022-2623 JRNL PMID 21985673 JRNL DOI 10.1021/JM2010173 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 54067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2753 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.75 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3924 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2675 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3725 REMARK 3 BIN R VALUE (WORKING SET) : 0.2651 REMARK 3 BIN FREE R VALUE : 0.3108 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37900 REMARK 3 B22 (A**2) : 3.16800 REMARK 3 B33 (A**2) : -2.78900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.332 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.305 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8058 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10957 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2793 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 231 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1096 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8058 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1038 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9146 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER 2.9.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PH 6.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.16500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.16500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.84000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.16500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.11500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.84000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.16500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.11500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.84000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ASN A -1 REMARK 465 LYS A 65 REMARK 465 LYS A 66 REMARK 465 ASP A 67 REMARK 465 SER A 68 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 LEU A 560 REMARK 465 MET B -2 REMARK 465 ASN B -1 REMARK 465 SER B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 65 REMARK 465 LYS B 66 REMARK 465 ASP B 67 REMARK 465 SER B 68 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 MET B 357 REMARK 465 ARG B 358 REMARK 465 GLY B 359 REMARK 465 ALA B 360 REMARK 465 LEU B 429 REMARK 465 GLU B 430 REMARK 465 LYS B 431 REMARK 465 GLU B 432 REMARK 465 PRO B 433 REMARK 465 ILE B 434 REMARK 465 VAL B 435 REMARK 465 GLY B 436 REMARK 465 ALA B 437 REMARK 465 GLU B 438 REMARK 465 THR B 439 REMARK 465 PHE B 440 REMARK 465 TYR B 441 REMARK 465 VAL B 442 REMARK 465 ASP B 443 REMARK 465 GLY B 444 REMARK 465 ALA B 445 REMARK 465 ALA B 446 REMARK 465 ASN B 447 REMARK 465 ARG B 448 REMARK 465 GLU B 449 REMARK 465 THR B 450 REMARK 465 LYS B 451 REMARK 465 LEU B 452 REMARK 465 GLY B 453 REMARK 465 LYS B 454 REMARK 465 ALA B 455 REMARK 465 GLY B 456 REMARK 465 TYR B 457 REMARK 465 VAL B 458 REMARK 465 THR B 459 REMARK 465 ASN B 460 REMARK 465 ARG B 461 REMARK 465 GLY B 462 REMARK 465 ARG B 463 REMARK 465 GLN B 464 REMARK 465 LYS B 465 REMARK 465 VAL B 466 REMARK 465 VAL B 467 REMARK 465 THR B 468 REMARK 465 LEU B 469 REMARK 465 THR B 470 REMARK 465 ASP B 471 REMARK 465 THR B 472 REMARK 465 THR B 473 REMARK 465 ASN B 474 REMARK 465 GLN B 475 REMARK 465 LYS B 476 REMARK 465 THR B 477 REMARK 465 GLU B 478 REMARK 465 LEU B 479 REMARK 465 GLN B 480 REMARK 465 ALA B 481 REMARK 465 ILE B 482 REMARK 465 TYR B 483 REMARK 465 LEU B 484 REMARK 465 ALA B 485 REMARK 465 LEU B 486 REMARK 465 GLN B 487 REMARK 465 ASP B 488 REMARK 465 SER B 489 REMARK 465 GLY B 490 REMARK 465 LEU B 491 REMARK 465 GLU B 492 REMARK 465 VAL B 493 REMARK 465 ASN B 494 REMARK 465 ILE B 495 REMARK 465 VAL B 496 REMARK 465 THR B 497 REMARK 465 ASP B 498 REMARK 465 SER B 499 REMARK 465 GLN B 500 REMARK 465 TYR B 501 REMARK 465 ALA B 502 REMARK 465 LEU B 503 REMARK 465 GLY B 504 REMARK 465 ILE B 505 REMARK 465 ILE B 506 REMARK 465 GLN B 507 REMARK 465 ALA B 508 REMARK 465 GLN B 509 REMARK 465 PRO B 510 REMARK 465 ASP B 511 REMARK 465 GLN B 512 REMARK 465 SER B 513 REMARK 465 GLU B 514 REMARK 465 SER B 515 REMARK 465 GLU B 516 REMARK 465 LEU B 517 REMARK 465 VAL B 518 REMARK 465 ASN B 519 REMARK 465 GLN B 520 REMARK 465 ILE B 521 REMARK 465 ILE B 522 REMARK 465 GLU B 523 REMARK 465 GLN B 524 REMARK 465 LEU B 525 REMARK 465 ILE B 526 REMARK 465 LYS B 527 REMARK 465 LYS B 528 REMARK 465 GLU B 529 REMARK 465 LYS B 530 REMARK 465 VAL B 531 REMARK 465 TYR B 532 REMARK 465 LEU B 533 REMARK 465 ALA B 534 REMARK 465 TRP B 535 REMARK 465 VAL B 536 REMARK 465 PRO B 537 REMARK 465 ALA B 538 REMARK 465 HIS B 539 REMARK 465 LYS B 540 REMARK 465 GLY B 541 REMARK 465 ILE B 542 REMARK 465 GLY B 543 REMARK 465 GLY B 544 REMARK 465 ASN B 545 REMARK 465 GLU B 546 REMARK 465 GLN B 547 REMARK 465 VAL B 548 REMARK 465 ASP B 549 REMARK 465 LYS B 550 REMARK 465 LEU B 551 REMARK 465 VAL B 552 REMARK 465 SER B 553 REMARK 465 ALA B 554 REMARK 465 GLY B 555 REMARK 465 ILE B 556 REMARK 465 ARG B 557 REMARK 465 LYS B 558 REMARK 465 VAL B 559 REMARK 465 LEU B 560 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 ARG A 557 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 346 C - N - CA ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 -141.26 64.69 REMARK 500 GLU A 138 -115.94 36.34 REMARK 500 MET A 184 -118.10 53.48 REMARK 500 ILE A 195 -52.33 -27.63 REMARK 500 LYS A 219 -49.06 -26.60 REMARK 500 VAL A 276 -6.62 -143.59 REMARK 500 GLN A 334 64.20 -33.70 REMARK 500 PHE A 346 9.85 84.60 REMARK 500 ARG A 358 75.72 -100.12 REMARK 500 GLU A 413 114.68 -32.30 REMARK 500 LEU A 491 -39.35 -29.31 REMARK 500 ILE A 556 -63.34 -123.00 REMARK 500 MET B 184 -122.73 56.86 REMARK 500 LEU B 214 137.20 -38.29 REMARK 500 THR B 296 -136.84 -102.95 REMARK 500 GLU B 297 -36.33 -134.75 REMARK 500 PHE B 346 -50.91 90.58 REMARK 500 LYS B 347 69.28 -57.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5MA A 561 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T19 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (WILD TYPE) IN REMARK 900 COMPLEX WITH INHIBITOR M05 REMARK 900 RELATED ID: 3TAM RELATED DB: PDB DBREF 3T1A A 1 560 UNP P04585 POL_HV1H2 588 1147 DBREF 3T1A B 1 560 UNP P04585 POL_HV1H2 588 1147 SEQADV 3T1A MET A -2 UNP P04585 EXPRESSION TAG SEQADV 3T1A ASN A -1 UNP P04585 EXPRESSION TAG SEQADV 3T1A SER A 0 UNP P04585 EXPRESSION TAG SEQADV 3T1A ASN A 103 UNP P04585 LYS 690 ENGINEERED MUTATION SEQADV 3T1A MET B -2 UNP P04585 EXPRESSION TAG SEQADV 3T1A ASN B -1 UNP P04585 EXPRESSION TAG SEQADV 3T1A SER B 0 UNP P04585 EXPRESSION TAG SEQADV 3T1A ASN B 103 UNP P04585 LYS 690 ENGINEERED MUTATION SEQRES 1 A 563 MET ASN SER PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 2 A 563 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 3 A 563 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 4 A 563 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 5 A 563 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 6 A 563 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 7 A 563 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 8 A 563 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 9 A 563 LYS ASN LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 10 A 563 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 11 A 563 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 12 A 563 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 13 A 563 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 14 A 563 ILE LEU GLU PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL SEQRES 15 A 563 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 16 A 563 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 17 A 563 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 18 A 563 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 19 A 563 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 20 A 563 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 21 A 563 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 22 A 563 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 23 A 563 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 24 A 563 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 25 A 563 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 26 A 563 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 27 A 563 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 28 A 563 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 29 A 563 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 30 A 563 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 31 A 563 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 32 A 563 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 33 A 563 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 34 A 563 TYR GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR SEQRES 35 A 563 PHE TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU SEQRES 36 A 563 GLY LYS ALA GLY TYR VAL THR ASN ARG GLY ARG GLN LYS SEQRES 37 A 563 VAL VAL THR LEU THR ASP THR THR ASN GLN LYS THR GLU SEQRES 38 A 563 LEU GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU SEQRES 39 A 563 GLU VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY SEQRES 40 A 563 ILE ILE GLN ALA GLN PRO ASP GLN SER GLU SER GLU LEU SEQRES 41 A 563 VAL ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS SEQRES 42 A 563 VAL TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY SEQRES 43 A 563 GLY ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE SEQRES 44 A 563 ARG LYS VAL LEU SEQRES 1 B 563 MET ASN SER PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 2 B 563 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 3 B 563 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 4 B 563 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 5 B 563 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 6 B 563 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 7 B 563 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 8 B 563 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 9 B 563 LYS ASN LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 10 B 563 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 11 B 563 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 12 B 563 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 13 B 563 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 14 B 563 ILE LEU GLU PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL SEQRES 15 B 563 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 16 B 563 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 17 B 563 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 18 B 563 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 19 B 563 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 20 B 563 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 21 B 563 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 22 B 563 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 23 B 563 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 24 B 563 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 25 B 563 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 26 B 563 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 27 B 563 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 28 B 563 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 29 B 563 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 30 B 563 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 31 B 563 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 32 B 563 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 33 B 563 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 34 B 563 TYR GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR SEQRES 35 B 563 PHE TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU SEQRES 36 B 563 GLY LYS ALA GLY TYR VAL THR ASN ARG GLY ARG GLN LYS SEQRES 37 B 563 VAL VAL THR LEU THR ASP THR THR ASN GLN LYS THR GLU SEQRES 38 B 563 LEU GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU SEQRES 39 B 563 GLU VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY SEQRES 40 B 563 ILE ILE GLN ALA GLN PRO ASP GLN SER GLU SER GLU LEU SEQRES 41 B 563 VAL ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS SEQRES 42 B 563 VAL TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY SEQRES 43 B 563 GLY ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY ILE SEQRES 44 B 563 ARG LYS VAL LEU HET 5MA A 561 31 HETNAM 5MA 1-(2,5-DICHLORO-3-{[5-CHLORO-1-(2H-PYRAZOLO[3,4- HETNAM 2 5MA B]PYRIDIN-3-YLMETHYL)-1H-BENZOTRIAZOL-4- HETNAM 3 5MA YL]OXY}PHENYL)METHANAMINE FORMUL 3 5MA C20 H14 CL3 N7 O FORMUL 4 HOH *268(H2 O) HELIX 1 1 THR A 27 GLU A 44 1 18 HELIX 2 2 PHE A 77 THR A 84 1 8 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 PHE A 124 ALA A 129 5 6 HELIX 6 6 GLY A 155 GLN A 174 1 20 HELIX 7 7 GLU A 194 ARG A 211 1 18 HELIX 8 8 VAL A 254 SER A 268 1 15 HELIX 9 9 VAL A 276 LEU A 283 1 8 HELIX 10 10 THR A 296 LYS A 311 1 16 HELIX 11 11 ASN A 363 GLY A 384 1 22 HELIX 12 12 GLN A 394 TYR A 405 1 12 HELIX 13 13 THR A 473 ASP A 488 1 16 HELIX 14 14 SER A 499 ALA A 508 1 10 HELIX 15 15 SER A 515 LYS A 528 1 14 HELIX 16 16 ILE A 542 ALA A 554 1 13 HELIX 17 17 THR B 27 GLU B 44 1 18 HELIX 18 18 PHE B 77 THR B 84 1 8 HELIX 19 19 THR B 84 VAL B 90 1 7 HELIX 20 20 GLY B 99 ASN B 103 5 5 HELIX 21 21 GLY B 112 VAL B 118 5 7 HELIX 22 22 PHE B 124 ALA B 129 5 6 HELIX 23 23 SER B 134 GLU B 138 5 5 HELIX 24 24 LYS B 154 ASN B 175 1 22 HELIX 25 25 GLU B 194 ARG B 211 1 18 HELIX 26 26 HIS B 235 TRP B 239 5 5 HELIX 27 27 THR B 253 SER B 268 1 16 HELIX 28 28 VAL B 276 LEU B 282 1 7 HELIX 29 29 GLU B 297 GLU B 312 1 16 HELIX 30 30 ASN B 363 GLY B 384 1 22 HELIX 31 31 GLN B 394 TRP B 402 1 9 HELIX 32 32 THR B 403 TYR B 405 5 3 HELIX 33 33 PRO B 420 TYR B 427 1 8 SHEET 1 A 3 ILE A 47 LYS A 49 0 SHEET 2 A 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 A 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 B 2 VAL A 60 ILE A 63 0 SHEET 2 B 2 ARG A 72 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 C 3 SER A 105 ASP A 110 0 SHEET 2 C 3 ASP A 186 SER A 191 -1 O LEU A 187 N LEU A 109 SHEET 3 C 3 ILE A 178 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 D 3 PHE A 227 TRP A 229 0 SHEET 2 D 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 D 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 E 2 TRP A 252 THR A 253 0 SHEET 2 E 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 F 5 LYS A 347 ALA A 355 0 SHEET 2 F 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 F 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 F 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 F 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 G 2 HIS A 361 THR A 362 0 SHEET 2 G 2 GLN A 512 SER A 513 -1 O GLN A 512 N THR A 362 SHEET 1 H 5 GLN A 464 LEU A 469 0 SHEET 2 H 5 GLY A 453 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 H 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 H 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 H 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 I 3 ILE B 47 LYS B 49 0 SHEET 2 I 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 I 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 J 2 VAL B 60 ILE B 63 0 SHEET 2 J 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 K 4 VAL B 179 TYR B 183 0 SHEET 2 K 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 K 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 K 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 L 5 ASN B 348 ALA B 355 0 SHEET 2 L 5 GLN B 336 TYR B 342 -1 N TRP B 337 O TYR B 354 SHEET 3 L 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 L 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 L 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 CISPEP 1 PRO A 225 PRO A 226 0 3.74 CISPEP 2 PRO A 420 PRO A 421 0 3.43 SITE 1 AC1 17 PRO A 95 LEU A 100 LYS A 101 LYS A 102 SITE 2 AC1 17 ASN A 103 VAL A 106 VAL A 108 TYR A 181 SITE 3 AC1 17 TYR A 188 VAL A 189 GLY A 190 PHE A 227 SITE 4 AC1 17 TRP A 229 LEU A 234 HIS A 235 PRO A 236 SITE 5 AC1 17 TYR A 318 CRYST1 118.330 154.230 155.680 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006423 0.00000