HEADER HYDROLASE 21-JUL-11 3T1G TITLE ENGINEERING OF ORGANOPHOSPHATE HYDROLASE BY COMPUTATIONAL DESIGN AND TITLE 2 DIRECTED EVOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORGANOPHOSPHATE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ADENOSINE DEAMINASE, ADA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS COMPUTATIONAL DESIGN, DIRECTED EVOLUTION, TIM BETA/ALPHA-BARREL, KEYWDS 2 METALLO-DEPENDENT HYDROLASE, ORGANOPHOSPHATE BINDING, HYDROLYSIS, KEYWDS 3 ARTIFICIAL ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TAKEUCHI,B.L.STODDARD REVDAT 3 13-SEP-23 3T1G 1 REMARK SEQADV LINK REVDAT 2 29-FEB-12 3T1G 1 JRNL REVDAT 1 08-FEB-12 3T1G 0 JRNL AUTH S.D.KHARE,Y.KIPNIS,P.J.GREISEN,R.TAKEUCHI,Y.ASHANI, JRNL AUTH 2 M.GOLDSMITH,Y.SONG,J.L.GALLAHER,I.SILMAN,H.LEADER, JRNL AUTH 3 J.L.SUSSMAN,B.L.STODDARD,D.S.TAWFIK,D.BAKER JRNL TITL COMPUTATIONAL REDESIGN OF A MONONUCLEAR ZINC METALLOENZYME JRNL TITL 2 FOR ORGANOPHOSPHATE HYDROLYSIS. JRNL REF NAT.CHEM.BIOL. V. 8 294 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22306579 JRNL DOI 10.1038/NCHEMBIO.777 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 14116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.508 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2862 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3875 ; 1.122 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;38.139 ;24.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;16.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2173 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1741 ; 0.358 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2819 ; 0.703 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1121 ; 1.175 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1056 ; 1.978 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8310 -11.1200 -16.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.0487 REMARK 3 T33: 0.0173 T12: -0.0195 REMARK 3 T13: 0.0120 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.4608 L22: 1.6699 REMARK 3 L33: 1.9001 L12: -0.1356 REMARK 3 L13: -0.5712 L23: 0.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.0429 S13: -0.0360 REMARK 3 S21: -0.0436 S22: -0.0014 S23: 0.0197 REMARK 3 S31: 0.0213 S32: -0.0057 S33: 0.0631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 0.2 M CALCIUM ACETATE, REMARK 280 20% PEG3000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.79600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.48600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.79600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.48600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 21 44.28 -146.04 REMARK 500 PRO A 39 4.24 -69.82 REMARK 500 LEU A 56 -102.85 -110.12 REMARK 500 GLN A 174 -9.53 70.10 REMARK 500 THR A 176 -14.08 -173.73 REMARK 500 SER A 220 74.62 51.66 REMARK 500 HIS A 238 -94.82 75.64 REMARK 500 ASP A 295 -74.61 71.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 175 THR A 176 98.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 353 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 108.3 REMARK 620 3 HIS A 214 NE2 89.1 97.9 REMARK 620 4 ASP A 295 OD1 91.0 85.0 176.9 REMARK 620 5 HOH A 398 O 129.3 120.2 97.9 79.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 355 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 123 O REMARK 620 2 ASP A 128 OD2 77.8 REMARK 620 3 HOH A 469 O 145.5 81.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 357 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 186 OE2 REMARK 620 2 GLU A 186 OE1 44.0 REMARK 620 3 HOH A 477 O 159.7 118.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 357 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A4L RELATED DB: PDB REMARK 900 THE PARENTAL ENZYME DBREF 3T1G A 4 352 UNP P03958 ADA_MOUSE 4 352 SEQADV 3T1G GLY A 0 UNP P03958 EXPRESSION TAG SEQADV 3T1G SER A 1 UNP P03958 EXPRESSION TAG SEQADV 3T1G HIS A 2 UNP P03958 EXPRESSION TAG SEQADV 3T1G MET A 3 UNP P03958 EXPRESSION TAG SEQADV 3T1G SER A 19 UNP P03958 ASP 19 ENGINEERED MUTATION SEQADV 3T1G GLN A 58 UNP P03958 LEU 58 ENGINEERED MUTATION SEQADV 3T1G THR A 61 UNP P03958 PHE 61 ENGINEERED MUTATION SEQADV 3T1G TRP A 65 UNP P03958 PHE 65 ENGINEERED MUTATION SEQADV 3T1G HIS A 138 UNP P03958 GLN 138 ENGINEERED MUTATION SEQADV 3T1G ILE A 183 UNP P03958 ALA 183 ENGINEERED MUTATION SEQADV 3T1G PHE A 218 UNP P03958 VAL 218 ENGINEERED MUTATION SEQADV 3T1G ALA A 296 UNP P03958 ASP 296 ENGINEERED MUTATION SEQADV 3T1G GLU A 299 UNP P03958 ILE 299 ENGINEERED MUTATION SEQRES 1 A 353 GLY SER HIS MET THR PRO ALA PHE ASN LYS PRO LYS VAL SEQRES 2 A 353 GLU LEU HIS VAL HIS LEU SER GLY ALA ILE LYS PRO GLU SEQRES 3 A 353 THR ILE LEU TYR PHE GLY LYS LYS ARG GLY ILE ALA LEU SEQRES 4 A 353 PRO ALA ASP THR VAL GLU GLU LEU ARG ASN ILE ILE GLY SEQRES 5 A 353 MET ASP LYS PRO LEU SER GLN PRO GLY THR LEU ALA LYS SEQRES 6 A 353 TRP ASP TYR TYR MET PRO VAL ILE ALA GLY CYS ARG GLU SEQRES 7 A 353 ALA ILE LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS SEQRES 8 A 353 ALA LYS GLU GLY VAL VAL TYR VAL GLU VAL ARG TYR SER SEQRES 9 A 353 PRO HIS LEU LEU ALA ASN SER LYS VAL ASP PRO MET PRO SEQRES 10 A 353 TRP ASN GLN THR GLU GLY ASP VAL THR PRO ASP ASP VAL SEQRES 11 A 353 VAL ASP LEU VAL ASN GLN GLY LEU HIS GLU GLY GLU GLN SEQRES 12 A 353 ALA PHE GLY ILE LYS VAL ARG SER ILE LEU CYS CYS MET SEQRES 13 A 353 ARG HIS GLN PRO SER TRP SER LEU GLU VAL LEU GLU LEU SEQRES 14 A 353 CYS LYS LYS TYR ASN GLN LYS THR VAL VAL ALA MET ASP SEQRES 15 A 353 LEU ILE GLY ASP GLU THR ILE GLU GLY SER SER LEU PHE SEQRES 16 A 353 PRO GLY HIS VAL GLU ALA TYR GLU GLY ALA VAL LYS ASN SEQRES 17 A 353 GLY ILE HIS ARG THR VAL HIS ALA GLY GLU PHE GLY SER SEQRES 18 A 353 PRO GLU VAL VAL ARG GLU ALA VAL ASP ILE LEU LYS THR SEQRES 19 A 353 GLU ARG VAL GLY HIS GLY TYR HIS THR ILE GLU ASP GLU SEQRES 20 A 353 ALA LEU TYR ASN ARG LEU LEU LYS GLU ASN MET HIS PHE SEQRES 21 A 353 GLU VAL CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP SEQRES 22 A 353 ASP PRO LYS THR THR HIS ALA VAL VAL ARG PHE LYS ASN SEQRES 23 A 353 ASP LYS ALA ASN TYR SER LEU ASN THR ASP ALA PRO LEU SEQRES 24 A 353 GLU PHE LYS SER THR LEU ASP THR ASP TYR GLN MET THR SEQRES 25 A 353 LYS LYS ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG SEQRES 26 A 353 LEU ASN ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU SEQRES 27 A 353 GLU GLU LYS LYS GLU LEU LEU GLU ARG LEU TYR ARG GLU SEQRES 28 A 353 TYR GLN HET ZN A 353 1 HET ZN A 354 1 HET ZN A 355 1 HET ZN A 356 1 HET CA A 357 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN 4(ZN 2+) FORMUL 6 CA CA 2+ FORMUL 7 HOH *136(H2 O) HELIX 1 1 HIS A 17 ALA A 21 5 5 HELIX 2 2 LYS A 23 GLY A 35 1 13 HELIX 3 3 THR A 42 GLY A 51 1 10 HELIX 4 4 SER A 57 ALA A 63 1 7 HELIX 5 5 LYS A 64 ALA A 73 1 10 HELIX 6 6 CYS A 75 LYS A 92 1 18 HELIX 7 7 SER A 103 ALA A 108 5 6 HELIX 8 8 MET A 115 GLN A 119 5 5 HELIX 9 9 THR A 125 GLY A 145 1 21 HELIX 10 10 GLN A 158 SER A 160 5 3 HELIX 11 11 TRP A 161 TYR A 172 1 12 HELIX 12 12 GLY A 190 LEU A 193 5 4 HELIX 13 13 PHE A 194 GLY A 208 1 15 HELIX 14 14 SER A 220 ILE A 230 1 11 HELIX 15 15 TYR A 240 GLU A 244 5 5 HELIX 16 16 ASP A 245 GLU A 255 1 11 HELIX 17 17 CYS A 262 THR A 269 1 8 HELIX 18 18 HIS A 278 ASP A 286 1 9 HELIX 19 19 ALA A 296 LYS A 301 1 6 HELIX 20 20 THR A 303 GLY A 316 1 14 HELIX 21 21 THR A 318 SER A 332 1 15 HELIX 22 22 PRO A 336 TYR A 351 1 16 SHEET 1 A 8 LYS A 11 GLU A 13 0 SHEET 2 A 8 VAL A 95 TYR A 102 1 O GLU A 99 N GLU A 13 SHEET 3 A 8 LYS A 147 MET A 155 1 O ARG A 149 N VAL A 100 SHEET 4 A 8 VAL A 177 ILE A 183 1 O ASP A 181 N CYS A 154 SHEET 5 A 8 HIS A 210 ALA A 215 1 O HIS A 210 N MET A 180 SHEET 6 A 8 ARG A 235 HIS A 238 1 O GLY A 237 N VAL A 213 SHEET 7 A 8 HIS A 258 VAL A 261 1 O GLU A 260 N VAL A 236 SHEET 8 A 8 ASN A 289 LEU A 292 1 O ASN A 289 N PHE A 259 LINK NE2 HIS A 15 ZN ZN A 353 1555 1555 2.17 LINK NE2 HIS A 17 ZN ZN A 353 1555 1555 2.02 LINK OE1 GLU A 45 ZN ZN A 354 1555 1555 2.57 LINK O ASP A 123 ZN ZN A 355 1555 1555 2.52 LINK OD2 ASP A 128 ZN ZN A 355 1555 1555 2.67 LINK OE2 GLU A 186 CA CA A 357 1555 1555 2.89 LINK OE1 GLU A 186 CA CA A 357 1555 1555 2.97 LINK NE2 HIS A 214 ZN ZN A 353 1555 1555 2.27 LINK OD1 ASP A 295 ZN ZN A 353 1555 1555 2.50 LINK ZN ZN A 353 O HOH A 398 1555 1555 2.23 LINK ZN ZN A 355 O HOH A 469 1555 1555 2.48 LINK CA CA A 357 O HOH A 477 1555 1555 2.43 CISPEP 1 ASP A 113 PRO A 114 0 -0.73 SITE 1 AC1 6 HIS A 15 HIS A 17 HIS A 214 HIS A 238 SITE 2 AC1 6 ASP A 295 HOH A 398 SITE 1 AC2 4 ASP A 41 GLU A 45 GLU A 189 ZN A 356 SITE 1 AC3 6 ASP A 123 ASP A 128 HOH A 446 HOH A 448 SITE 2 AC3 6 HOH A 466 HOH A 469 SITE 1 AC4 3 ASP A 41 GLU A 45 ZN A 354 SITE 1 AC5 5 GLU A 186 GLU A 217 PHE A 218 GLY A 219 SITE 2 AC5 5 HOH A 477 CRYST1 47.391 77.592 94.972 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021101 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010529 0.00000