HEADER MOTOR PROTEIN 24-JUL-11 3T34 TITLE ARABIDOPSIS THALIANA DYNAMIN-RELATED PROTEIN 1A (ATDRP1A) IN TITLE 2 PREFISSION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNAMIN-RELATED PROTEIN 1A, LINKER, DYNAMIN-RELATED PROTEIN COMPND 3 1A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 1-325, 579-606; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS, SYNTHETIC, THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DYNAMIN-LIKE PROTEIN 1A, GTPASE, MEMBRANE FISSION, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.M.YAN,Y.Y.MA,Y.N.SUN,Z.Y.LOU REVDAT 3 01-NOV-23 3T34 1 REMARK LINK REVDAT 2 28-JUN-17 3T34 1 SOURCE REVDAT 1 06-JUN-12 3T34 0 JRNL AUTH L.M.YAN,Y.Y.MA,Y.N.SUN,J.GAO,X.CHEN,J.LIU,C.WANG,Z.RAO, JRNL AUTH 2 Z.Y.LOU JRNL TITL STRUCTURAL BASIS FOR MECHANOCHEMICAL ROLE OF ARABIDOPSIS JRNL TITL 2 THALIANA DYNAMIN-RELATED PROTEIN IN MEMBRANE FISSION JRNL REF J MOL CELL BIOL V. 3 378 2011 JRNL REFN ISSN 1674-2788 JRNL PMID 22107825 JRNL DOI 10.1093/JMCB/MJR032 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 29759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3127 - 5.3443 0.97 2679 138 0.2194 0.2235 REMARK 3 2 5.3443 - 4.2434 1.00 2733 147 0.1986 0.2583 REMARK 3 3 4.2434 - 3.7075 1.00 2716 154 0.2173 0.2246 REMARK 3 4 3.7075 - 3.3687 1.00 2688 153 0.2482 0.3088 REMARK 3 5 3.3687 - 3.1273 1.00 2699 149 0.2539 0.3050 REMARK 3 6 3.1273 - 2.9430 1.00 2704 135 0.2773 0.3943 REMARK 3 7 2.9430 - 2.7956 1.00 2689 157 0.2677 0.3731 REMARK 3 8 2.7956 - 2.6740 1.00 2693 137 0.2819 0.3610 REMARK 3 9 2.6740 - 2.5711 1.00 2717 149 0.2790 0.3922 REMARK 3 10 2.5711 - 2.4823 0.99 2678 133 0.3075 0.4321 REMARK 3 11 2.4823 - 2.4047 0.96 2607 115 0.2894 0.3681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 66.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.730 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.79970 REMARK 3 B22 (A**2) : -4.32650 REMARK 3 B33 (A**2) : -8.47320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -13.73570 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5405 REMARK 3 ANGLE : 1.481 7298 REMARK 3 CHIRALITY : 0.104 855 REMARK 3 PLANARITY : 0.007 925 REMARK 3 DIHEDRAL : 20.409 2080 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1000066976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 160MM SODIUM FORMATE, 16%(W/V) REMARK 280 POLYETHYLENE GLYCOL 3350, 40MM MAGNESIUM CHLORIDE, 6%(W/V) 2- REMARK 280 PROPANOL, 20MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.20350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 LEU A 30 REMARK 465 TRP A 31 REMARK 465 LEU A 317 REMARK 465 SER A 318 REMARK 465 ARG A 319 REMARK 465 LEU A 320 REMARK 465 GLY A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 ILE A 324 REMARK 465 ALA A 325 REMARK 465 HIS A 326 REMARK 465 GLY A 327 REMARK 465 THR A 328 REMARK 465 ASP A 329 REMARK 465 SER A 330 REMARK 465 ARG A 331 REMARK 465 VAL A 332 REMARK 465 ASP A 579 REMARK 465 PRO A 580 REMARK 465 ALA A 581 REMARK 465 ILE A 582 REMARK 465 PRO B 28 REMARK 465 GLU B 316 REMARK 465 LEU B 317 REMARK 465 SER B 318 REMARK 465 ARG B 319 REMARK 465 LEU B 320 REMARK 465 GLY B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 465 ILE B 324 REMARK 465 ALA B 325 REMARK 465 HIS B 326 REMARK 465 GLY B 327 REMARK 465 THR B 328 REMARK 465 ASP B 329 REMARK 465 SER B 330 REMARK 465 ARG B 331 REMARK 465 VAL B 332 REMARK 465 ASP B 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR A 315 OE2 GLU A 584 1.24 REMARK 500 O GLU A 312 OE1 GLU A 584 1.81 REMARK 500 OE2 GLU A 2 O HOH A 1034 1.81 REMARK 500 O HOH B 1024 O HOH B 1111 1.86 REMARK 500 O ARG B 585 N SER B 587 1.93 REMARK 500 O HOH A 1010 O HOH A 1045 1.97 REMARK 500 O HOH B 1008 O HOH B 1046 1.97 REMARK 500 O GLY A 203 O HOH A 337 2.00 REMARK 500 OE2 GLU B 85 OG SER B 132 2.01 REMARK 500 O HOH A 363 O HOH A 1071 2.02 REMARK 500 N ILE B 130 O HOH B 1038 2.05 REMARK 500 O GLU A 110 O HOH A 1074 2.06 REMARK 500 N ILE B 582 OE2 GLU B 584 2.06 REMARK 500 O LEU B 143 O HOH B 1006 2.06 REMARK 500 NH1 ARG A 585 OG SER A 587 2.07 REMARK 500 O HOH A 346 O HOH A 373 2.07 REMARK 500 AL ALF A 1001 O HOH A 1004 2.08 REMARK 500 N MET B 216 O HOH B 1028 2.09 REMARK 500 OD1 ASP B 142 O HOH B 1006 2.09 REMARK 500 O3B GDP A 1000 AL ALF A 1001 2.09 REMARK 500 O GLU A 584 O HOH A 1083 2.09 REMARK 500 O GLN B 12 N ALA B 14 2.10 REMARK 500 O GLY A 82 N ARG A 84 2.10 REMARK 500 NH2 ARG B 585 O HOH B 1035 2.12 REMARK 500 NE2 GLN A 303 O HOH A 1120 2.12 REMARK 500 OE1 GLU A 88 O HOH A 1022 2.12 REMARK 500 N SER B 155 O HOH B 1112 2.13 REMARK 500 OH TYR B 264 O HOH B 1078 2.13 REMARK 500 O ALA B 17 N GLY B 19 2.14 REMARK 500 C GLU A 314 OE2 GLU A 584 2.15 REMARK 500 O3B GDP B 1000 AL ALF B 1001 2.15 REMARK 500 O MET A 165 OG SER A 168 2.15 REMARK 500 OE2 GLU A 227 NE2 HIS A 273 2.16 REMARK 500 O HOH B 398 O HOH B 1110 2.16 REMARK 500 N SER B 44 F3 ALF B 1001 2.17 REMARK 500 O LEU B 30 N SER B 33 2.19 REMARK 500 O GLY B 19 N HIS B 21 2.19 REMARK 500 O THR B 269 O HOH B 1047 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 63 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 -156.48 48.35 REMARK 500 ILE A 11 -2.22 -46.79 REMARK 500 GLN A 12 -75.19 -153.00 REMARK 500 ARG A 13 -35.00 -36.54 REMARK 500 ASP A 23 56.09 -144.76 REMARK 500 SER A 24 36.17 79.24 REMARK 500 GLN A 43 121.17 -38.17 REMARK 500 PHE A 59 -2.33 -153.95 REMARK 500 SER A 64 -124.22 -30.12 REMARK 500 ASP A 80 58.60 -46.24 REMARK 500 ASP A 81 64.23 11.47 REMARK 500 THR A 83 46.00 -56.68 REMARK 500 ARG A 113 -47.04 -21.91 REMARK 500 THR A 115 -86.09 -154.04 REMARK 500 VAL A 149 -87.65 -99.01 REMARK 500 ALA A 150 130.14 116.61 REMARK 500 VAL A 151 -157.21 -172.24 REMARK 500 ASP A 152 -115.59 47.41 REMARK 500 SER A 155 166.68 -40.62 REMARK 500 LYS A 172 120.18 -32.83 REMARK 500 ASN A 174 43.82 -72.97 REMARK 500 GLU A 227 30.74 -66.19 REMARK 500 SER A 230 -107.63 -66.30 REMARK 500 GLU A 263 23.32 -77.29 REMARK 500 TYR A 264 -53.64 -129.22 REMARK 500 THR A 269 -74.57 14.11 REMARK 500 HIS A 273 1.83 -63.66 REMARK 500 ASN A 276 11.93 -66.31 REMARK 500 PRO A 300 46.04 -62.65 REMARK 500 LYS A 308 -118.03 -66.18 REMARK 500 THR A 309 -83.47 43.81 REMARK 500 LEU A 311 38.73 -73.37 REMARK 500 GLU A 314 45.26 -148.39 REMARK 500 THR A 315 49.45 -88.94 REMARK 500 GLU A 584 -120.29 -72.92 REMARK 500 ILE A 589 32.02 -73.11 REMARK 500 ALA A 599 36.72 -60.90 REMARK 500 GLN A 600 -0.22 -163.11 REMARK 500 GLU A 602 41.84 -143.23 REMARK 500 ASP A 604 48.74 -103.28 REMARK 500 GLU B 2 -94.43 -29.65 REMARK 500 ASN B 3 -87.62 26.19 REMARK 500 LEU B 7 30.73 -84.57 REMARK 500 VAL B 8 -30.36 -151.48 REMARK 500 ILE B 11 1.89 -62.90 REMARK 500 GLN B 12 -158.39 -122.11 REMARK 500 ARG B 13 -51.18 54.96 REMARK 500 CYS B 15 -94.44 -168.12 REMARK 500 ALA B 17 -83.22 -64.51 REMARK 500 LEU B 18 33.89 -60.80 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 63 SER A 64 -141.40 REMARK 500 THR A 268 THR A 269 148.50 REMARK 500 GLY B 63 SER B 64 36.52 REMARK 500 ILE B 299 PRO B 300 147.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 44 OG REMARK 620 2 GLY A 63 O 85.0 REMARK 620 3 GLY A 65 O 77.0 105.7 REMARK 620 4 GDP A1000 O3B 95.7 119.6 133.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 48 OG REMARK 620 2 THR A 68 OG1 79.1 REMARK 620 3 GDP A1000 O1B 95.9 166.4 REMARK 620 4 HOH A1006 O 94.2 89.0 104.1 REMARK 620 5 HOH A1007 O 79.7 88.6 78.0 173.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 44 OG REMARK 620 2 GLY B 63 O 104.2 REMARK 620 3 GLY B 65 O 104.8 108.6 REMARK 620 4 GDP B1000 O3B 100.9 89.1 143.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 48 OG REMARK 620 2 THR B 68 OG1 65.1 REMARK 620 3 GDP B1000 O1B 81.5 122.0 REMARK 620 4 HOH B1006 O 104.9 92.2 143.5 REMARK 620 5 HOH B1007 O 60.2 59.7 62.7 151.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T35 RELATED DB: PDB DBREF 3T34 A 1 325 UNP P42697 DRP1A_ARATH 1 325 DBREF 3T34 A 326 332 PDB 3T34 3T34 326 332 DBREF 3T34 A 579 606 UNP P42697 DRP1A_ARATH 579 606 DBREF 3T34 B 1 325 UNP P42697 DRP1A_ARATH 1 325 DBREF 3T34 B 326 332 PDB 3T34 3T34 326 332 DBREF 3T34 B 579 606 UNP P42697 DRP1A_ARATH 579 606 SEQRES 1 A 360 MET GLU ASN LEU ILE SER LEU VAL ASN LYS ILE GLN ARG SEQRES 2 A 360 ALA CYS THR ALA LEU GLY ASP HIS GLY ASP SER SER ALA SEQRES 3 A 360 LEU PRO THR LEU TRP ASP SER LEU PRO ALA ILE ALA VAL SEQRES 4 A 360 VAL GLY GLY GLN SER SER GLY LYS SER SER VAL LEU GLU SEQRES 5 A 360 SER ILE VAL GLY LYS ASP PHE LEU PRO ARG GLY SER GLY SEQRES 6 A 360 ILE VAL THR ARG ARG PRO LEU VAL LEU GLN LEU GLN LYS SEQRES 7 A 360 ILE ASP ASP GLY THR ARG GLU TYR ALA GLU PHE LEU HIS SEQRES 8 A 360 LEU PRO ARG LYS LYS PHE THR ASP PHE ALA ALA VAL ARG SEQRES 9 A 360 LYS GLU ILE GLN ASP GLU THR ASP ARG GLU THR GLY ARG SEQRES 10 A 360 SER LYS ALA ILE SER SER VAL PRO ILE HIS LEU SER ILE SEQRES 11 A 360 TYR SER PRO ASN VAL VAL ASN LEU THR LEU ILE ASP LEU SEQRES 12 A 360 PRO GLY LEU THR LYS VAL ALA VAL ASP GLY GLN SER ASP SEQRES 13 A 360 SER ILE VAL LYS ASP ILE GLU ASN MET VAL ARG SER TYR SEQRES 14 A 360 ILE GLU LYS PRO ASN CYS ILE ILE LEU ALA ILE SER PRO SEQRES 15 A 360 ALA ASN GLN ASP LEU ALA THR SER ASP ALA ILE LYS ILE SEQRES 16 A 360 SER ARG GLU VAL ASP PRO SER GLY ASP ARG THR PHE GLY SEQRES 17 A 360 VAL LEU THR LYS ILE ASP LEU MET ASP LYS GLY THR ASP SEQRES 18 A 360 ALA VAL GLU ILE LEU GLU GLY ARG SER PHE LYS LEU LYS SEQRES 19 A 360 TYR PRO TRP VAL GLY VAL VAL ASN ARG SER GLN ALA ASP SEQRES 20 A 360 ILE ASN LYS ASN VAL ASP MET ILE ALA ALA ARG LYS ARG SEQRES 21 A 360 GLU ARG GLU TYR PHE SER ASN THR THR GLU TYR ARG HIS SEQRES 22 A 360 LEU ALA ASN LYS MET GLY SER GLU HIS LEU ALA LYS MET SEQRES 23 A 360 LEU SER LYS HIS LEU GLU ARG VAL ILE LYS SER ARG ILE SEQRES 24 A 360 PRO GLY ILE GLN SER LEU ILE ASN LYS THR VAL LEU GLU SEQRES 25 A 360 LEU GLU THR GLU LEU SER ARG LEU GLY LYS PRO ILE ALA SEQRES 26 A 360 HIS GLY THR ASP SER ARG VAL ASP PRO ALA ILE MET GLU SEQRES 27 A 360 ARG ARG SER ALA ILE SER LYS ARG LEU GLU LEU TYR ARG SEQRES 28 A 360 ALA ALA GLN SER GLU ILE ASP ALA VAL SEQRES 1 B 360 MET GLU ASN LEU ILE SER LEU VAL ASN LYS ILE GLN ARG SEQRES 2 B 360 ALA CYS THR ALA LEU GLY ASP HIS GLY ASP SER SER ALA SEQRES 3 B 360 LEU PRO THR LEU TRP ASP SER LEU PRO ALA ILE ALA VAL SEQRES 4 B 360 VAL GLY GLY GLN SER SER GLY LYS SER SER VAL LEU GLU SEQRES 5 B 360 SER ILE VAL GLY LYS ASP PHE LEU PRO ARG GLY SER GLY SEQRES 6 B 360 ILE VAL THR ARG ARG PRO LEU VAL LEU GLN LEU GLN LYS SEQRES 7 B 360 ILE ASP ASP GLY THR ARG GLU TYR ALA GLU PHE LEU HIS SEQRES 8 B 360 LEU PRO ARG LYS LYS PHE THR ASP PHE ALA ALA VAL ARG SEQRES 9 B 360 LYS GLU ILE GLN ASP GLU THR ASP ARG GLU THR GLY ARG SEQRES 10 B 360 SER LYS ALA ILE SER SER VAL PRO ILE HIS LEU SER ILE SEQRES 11 B 360 TYR SER PRO ASN VAL VAL ASN LEU THR LEU ILE ASP LEU SEQRES 12 B 360 PRO GLY LEU THR LYS VAL ALA VAL ASP GLY GLN SER ASP SEQRES 13 B 360 SER ILE VAL LYS ASP ILE GLU ASN MET VAL ARG SER TYR SEQRES 14 B 360 ILE GLU LYS PRO ASN CYS ILE ILE LEU ALA ILE SER PRO SEQRES 15 B 360 ALA ASN GLN ASP LEU ALA THR SER ASP ALA ILE LYS ILE SEQRES 16 B 360 SER ARG GLU VAL ASP PRO SER GLY ASP ARG THR PHE GLY SEQRES 17 B 360 VAL LEU THR LYS ILE ASP LEU MET ASP LYS GLY THR ASP SEQRES 18 B 360 ALA VAL GLU ILE LEU GLU GLY ARG SER PHE LYS LEU LYS SEQRES 19 B 360 TYR PRO TRP VAL GLY VAL VAL ASN ARG SER GLN ALA ASP SEQRES 20 B 360 ILE ASN LYS ASN VAL ASP MET ILE ALA ALA ARG LYS ARG SEQRES 21 B 360 GLU ARG GLU TYR PHE SER ASN THR THR GLU TYR ARG HIS SEQRES 22 B 360 LEU ALA ASN LYS MET GLY SER GLU HIS LEU ALA LYS MET SEQRES 23 B 360 LEU SER LYS HIS LEU GLU ARG VAL ILE LYS SER ARG ILE SEQRES 24 B 360 PRO GLY ILE GLN SER LEU ILE ASN LYS THR VAL LEU GLU SEQRES 25 B 360 LEU GLU THR GLU LEU SER ARG LEU GLY LYS PRO ILE ALA SEQRES 26 B 360 HIS GLY THR ASP SER ARG VAL ASP PRO ALA ILE MET GLU SEQRES 27 B 360 ARG ARG SER ALA ILE SER LYS ARG LEU GLU LEU TYR ARG SEQRES 28 B 360 ALA ALA GLN SER GLU ILE ASP ALA VAL HET GDP A1000 28 HET ALF A1001 5 HET MG A1002 1 HET NA A1003 1 HET GDP B1000 28 HET ALF B1001 5 HET MG B1002 1 HET NA B1003 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 ALF 2(AL F4 1-) FORMUL 5 MG 2(MG 2+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *373(H2 O) HELIX 1 1 ASN A 3 ILE A 11 1 9 HELIX 2 2 GLY A 46 GLY A 56 1 11 HELIX 3 3 ASP A 99 GLU A 114 1 16 HELIX 4 4 SER A 157 LYS A 172 1 16 HELIX 5 5 ASP A 186 THR A 189 5 4 HELIX 6 6 SER A 190 VAL A 199 1 10 HELIX 7 7 LYS A 212 MET A 216 5 5 HELIX 8 8 ALA A 222 GLU A 227 1 6 HELIX 9 9 SER A 244 LYS A 250 1 7 HELIX 10 10 ASP A 253 SER A 266 1 14 HELIX 11 11 TYR A 271 MET A 278 5 8 HELIX 12 12 GLY A 279 SER A 297 1 19 HELIX 13 13 GLY A 301 LEU A 311 1 11 HELIX 14 14 SER A 587 ALA A 599 1 13 HELIX 15 15 GLU B 2 LYS B 10 1 9 HELIX 16 16 LEU B 30 LEU B 34 5 5 HELIX 17 17 GLY B 46 GLY B 56 1 11 HELIX 18 18 ASP B 99 GLY B 116 1 18 HELIX 19 19 SER B 157 LYS B 172 1 16 HELIX 20 20 ASP B 186 THR B 189 5 4 HELIX 21 21 SER B 190 ASP B 200 1 11 HELIX 22 22 LYS B 212 MET B 216 5 5 HELIX 23 23 ALA B 222 GLU B 227 1 6 HELIX 24 24 SER B 244 LYS B 250 1 7 HELIX 25 25 ASP B 253 THR B 268 1 16 HELIX 26 26 LEU B 274 MET B 278 5 5 HELIX 27 27 GLY B 279 LYS B 296 1 18 HELIX 28 28 SER B 297 ILE B 299 5 3 HELIX 29 29 ILE B 306 LEU B 311 1 6 HELIX 30 30 ILE B 582 ARG B 585 5 4 HELIX 31 31 ARG B 586 ALA B 599 1 14 SHEET 1 A 8 TYR A 86 PHE A 89 0 SHEET 2 A 8 ILE A 126 SER A 132 -1 O TYR A 131 N TYR A 86 SHEET 3 A 8 LEU A 72 LYS A 78 1 N GLN A 77 O ILE A 130 SHEET 4 A 8 LEU A 138 ASP A 142 -1 O LEU A 138 N LEU A 76 SHEET 5 A 8 ALA A 36 VAL A 40 1 N ILE A 37 O ILE A 141 SHEET 6 A 8 CYS A 175 PRO A 182 1 O ILE A 180 N VAL A 40 SHEET 7 A 8 THR A 206 THR A 211 1 O VAL A 209 N ALA A 179 SHEET 8 A 8 VAL A 238 GLY A 239 1 O VAL A 238 N GLY A 208 SHEET 1 B 6 LEU B 72 GLN B 75 0 SHEET 2 B 6 THR B 139 ASP B 142 -1 O LEU B 140 N LEU B 74 SHEET 3 B 6 ALA B 36 VAL B 40 1 N ILE B 37 O ILE B 141 SHEET 4 B 6 CYS B 175 PRO B 182 1 O ILE B 180 N VAL B 40 SHEET 5 B 6 THR B 206 THR B 211 1 O PHE B 207 N ILE B 177 SHEET 6 B 6 VAL B 238 GLY B 239 1 O VAL B 238 N LEU B 210 SHEET 1 C 2 TYR B 86 PHE B 89 0 SHEET 2 C 2 LEU B 128 TYR B 131 -1 O TYR B 131 N TYR B 86 LINK OG SER A 44 NA NA A1003 1555 1555 2.69 LINK OG SER A 48 MG MG A1002 1555 1555 2.31 LINK O GLY A 63 NA NA A1003 1555 1555 2.52 LINK O GLY A 65 NA NA A1003 1555 1555 2.55 LINK OG1 THR A 68 MG MG A1002 1555 1555 2.28 LINK O1B GDP A1000 MG MG A1002 1555 1555 2.10 LINK O3B GDP A1000 NA NA A1003 1555 1555 2.85 LINK MG MG A1002 O HOH A1006 1555 1555 2.29 LINK MG MG A1002 O HOH A1007 1555 1555 2.35 LINK OG SER B 44 NA NA B1003 1555 1555 2.56 LINK OG SER B 48 MG MG B1002 1555 1555 2.57 LINK O GLY B 63 NA NA B1003 1555 1555 2.53 LINK O GLY B 65 NA NA B1003 1555 1555 2.47 LINK OG1 THR B 68 MG MG B1002 1555 1555 2.80 LINK O1B GDP B1000 MG MG B1002 1555 1555 2.25 LINK O3B GDP B1000 NA NA B1003 1555 1555 2.94 LINK MG MG B1002 O HOH B1006 1555 1555 2.20 LINK MG MG B1002 O HOH B1007 1555 1555 2.28 CISPEP 1 GLU A 2 ASN A 3 0 11.64 CISPEP 2 ALA A 26 LEU A 27 0 -2.28 CISPEP 3 SER A 64 GLY A 65 0 14.57 CISPEP 4 ALA B 26 LEU B 27 0 -3.94 SITE 1 AC1 23 SER A 44 SER A 45 GLY A 46 LYS A 47 SITE 2 AC1 23 SER A 48 SER A 49 ARG A 62 GLY A 63 SITE 3 AC1 23 LYS A 212 ASP A 214 LEU A 215 VAL A 241 SITE 4 AC1 23 ASN A 242 ARG A 243 SER A 244 GLN A 245 SITE 5 AC1 23 ILE A 248 ALF A1001 MG A1002 NA A1003 SITE 6 AC1 23 HOH A1007 HOH A1019 ASP B 217 SITE 1 AC2 13 GLN A 43 SER A 44 LYS A 47 GLY A 65 SITE 2 AC2 13 ILE A 66 VAL A 67 THR A 68 GLY A 145 SITE 3 AC2 13 GDP A1000 MG A1002 NA A1003 HOH A1004 SITE 4 AC2 13 HOH A1006 SITE 1 AC3 6 SER A 48 THR A 68 GDP A1000 ALF A1001 SITE 2 AC3 6 HOH A1006 HOH A1007 SITE 1 AC4 6 SER A 44 GLY A 63 GLY A 65 VAL A 67 SITE 2 AC4 6 GDP A1000 ALF A1001 SITE 1 AC5 25 ASP A 217 HOH A1012 SER B 44 SER B 45 SITE 2 AC5 25 GLY B 46 LYS B 47 SER B 48 SER B 49 SITE 3 AC5 25 ARG B 62 GLY B 63 SER B 64 VAL B 67 SITE 4 AC5 25 LYS B 212 ASP B 214 LEU B 215 VAL B 241 SITE 5 AC5 25 ASN B 242 ARG B 243 SER B 244 GLN B 245 SITE 6 AC5 25 ILE B 248 ALF B1001 MG B1002 NA B1003 SITE 7 AC5 25 HOH B1007 SITE 1 AC6 12 GLN B 43 SER B 44 LYS B 47 GLY B 65 SITE 2 AC6 12 VAL B 67 THR B 68 GLY B 145 GDP B1000 SITE 3 AC6 12 MG B1002 NA B1003 HOH B1004 HOH B1007 SITE 1 AC7 8 SER B 48 THR B 68 ASP B 142 LEU B 143 SITE 2 AC7 8 GDP B1000 ALF B1001 HOH B1006 HOH B1007 SITE 1 AC8 7 SER B 44 GLY B 63 SER B 64 GLY B 65 SITE 2 AC8 7 VAL B 67 GDP B1000 ALF B1001 CRYST1 53.471 86.407 88.485 90.00 90.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018702 0.000000 0.000180 0.00000 SCALE2 0.000000 0.011573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011302 0.00000