HEADER SIGNALING PROTEIN 25-JUL-11 3T3A TITLE CRYSTAL STRUCTURE OF H107R MUTANT OF EXTRACELLULAR DOMAIN OF MOUSE TITLE 2 RECEPTOR NKR-P1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY B MEMBER 1A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 89-227); COMPND 5 SYNONYM: NKR-P1A, CD161 ANTIGEN-LIKE FAMILY MEMBER A, LYMPHOCYTE COMPND 6 ANTIGEN 55A, LY-55A, NKR-P1.7, NATURAL KILLER CELL SURFACE PROTEIN COMPND 7 P1-2, NKR-P1 2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6; SOURCE 6 GENE: KLRB1A, LY55, LY55A, NKRP1A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-(DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-30A KEYWDS C-TYPE LECTIN-LIKE DOMAIN, DOMAIN SWAPPING, TWINNING, NATURAL KILLER KEYWDS 2 CELL RECEPTOR, TRANSMEMBRANE RECEPTOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KOLENKO,D.ROZBESKY,K.BEZOUSKA,J.HASEK,J.DOHNALEK REVDAT 4 13-SEP-23 3T3A 1 REMARK SEQADV REVDAT 3 28-MAR-12 3T3A 1 JRNL REVDAT 2 14-DEC-11 3T3A 1 JRNL REVDAT 1 10-AUG-11 3T3A 0 JRNL AUTH P.KOLENKO,D.ROZBESKY,O.VANEK,K.BEZOUSKA,J.HASEK,J.DOHNALEK JRNL TITL STRUCTURE OF THE H107R VARIANT OF THE EXTRACELLULAR DOMAIN JRNL TITL 2 OF MOUSE NKR-P1A AT 2.3 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1519 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 22139156 JRNL DOI 10.1107/S1744309111046203 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : CCP4 STEREOCHEMISTRY LIBRARY, VERSION 6.1.3 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.03000 REMARK 3 B22 (A**2) : 11.03000 REMARK 3 B33 (A**2) : -22.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.000 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1999 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1337 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2705 ; 1.620 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3258 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 6.796 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;36.412 ;25.588 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;18.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2192 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.861 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, K, -L REMARK 3 TWIN FRACTION : 0.139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INTENSITY-BASED TWIN REFINEMENT, REMARK 3 ALPHA(TWIN) 14%, HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : KMC-1, SI (111) REMARK 200 OPTICS : 2 MIRRORS AND A DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3M9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M AMMONIUM PHOSPHATE, PH 4.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.37050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 32.37050 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.04800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.37050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.02400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.37050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.07200 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.37050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.37050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.04800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 32.37050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 117.07200 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 32.37050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.02400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.74100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 89 REMARK 465 ALA A 90 REMARK 465 LYS A 91 REMARK 465 LEU A 92 REMARK 465 TYR A 215 REMARK 465 HIS A 216 REMARK 465 GLU A 217 REMARK 465 THR A 218 REMARK 465 LEU A 219 REMARK 465 SER A 220 REMARK 465 ASN A 221 REMARK 465 TYR A 222 REMARK 465 VAL A 223 REMARK 465 GLY A 224 REMARK 465 TYR A 225 REMARK 465 GLY A 226 REMARK 465 HIS A 227 REMARK 465 SER B 89 REMARK 465 ALA B 90 REMARK 465 LYS B 91 REMARK 465 LEU B 92 REMARK 465 TYR B 149 REMARK 465 PRO B 161 REMARK 465 ASP B 162 REMARK 465 TYR B 215 REMARK 465 HIS B 216 REMARK 465 GLU B 217 REMARK 465 THR B 218 REMARK 465 LEU B 219 REMARK 465 SER B 220 REMARK 465 ASN B 221 REMARK 465 TYR B 222 REMARK 465 VAL B 223 REMARK 465 GLY B 224 REMARK 465 TYR B 225 REMARK 465 GLY B 226 REMARK 465 HIS B 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 102 -128.09 35.26 REMARK 500 ASN A 186 48.02 38.77 REMARK 500 ASP A 195 27.76 -71.26 REMARK 500 HIS B 101 118.77 -164.11 REMARK 500 ARG B 102 -119.08 50.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M9Z RELATED DB: PDB REMARK 900 WILD TYPE DBREF 3T3A A 89 227 UNP P27811 KLRBA_MOUSE 89 227 DBREF 3T3A B 89 227 UNP P27811 KLRBA_MOUSE 89 227 SEQADV 3T3A ARG A 107 UNP P27811 HIS 107 ENGINEERED MUTATION SEQADV 3T3A GLN A 110 UNP P27811 HIS 110 VARIANT SEQADV 3T3A GLY A 182 UNP P27811 ASP 182 VARIANT SEQADV 3T3A ARG B 107 UNP P27811 HIS 107 ENGINEERED MUTATION SEQADV 3T3A GLN B 110 UNP P27811 HIS 110 VARIANT SEQADV 3T3A GLY B 182 UNP P27811 ASP 182 VARIANT SEQRES 1 A 139 SER ALA LYS LEU GLU CYS PRO GLN ASP TRP LEU SER HIS SEQRES 2 A 139 ARG ASP LYS CYS PHE ARG VAL SER GLN VAL SER ASN THR SEQRES 3 A 139 TRP GLU GLU GLY LEU VAL ASP CYS ASP GLY LYS GLY ALA SEQRES 4 A 139 THR LEU MET LEU ILE GLN ASP GLN GLU GLU LEU ARG PHE SEQRES 5 A 139 LEU LEU ASP SER ILE LYS GLU LYS TYR ASN SER PHE TRP SEQRES 6 A 139 ILE GLY LEU ARG TYR THR LEU PRO ASP MET ASN TRP LYS SEQRES 7 A 139 TRP ILE ASN GLY SER THR LEU ASN SER ASP VAL LEU LYS SEQRES 8 A 139 ILE THR GLY ASP THR GLU ASN ASP SER CYS ALA ALA ILE SEQRES 9 A 139 SER GLY ASP LYS VAL THR PHE GLU SER CYS ASN SER ASP SEQRES 10 A 139 ASN ARG TRP ILE CYS GLN LYS GLU LEU TYR HIS GLU THR SEQRES 11 A 139 LEU SER ASN TYR VAL GLY TYR GLY HIS SEQRES 1 B 139 SER ALA LYS LEU GLU CYS PRO GLN ASP TRP LEU SER HIS SEQRES 2 B 139 ARG ASP LYS CYS PHE ARG VAL SER GLN VAL SER ASN THR SEQRES 3 B 139 TRP GLU GLU GLY LEU VAL ASP CYS ASP GLY LYS GLY ALA SEQRES 4 B 139 THR LEU MET LEU ILE GLN ASP GLN GLU GLU LEU ARG PHE SEQRES 5 B 139 LEU LEU ASP SER ILE LYS GLU LYS TYR ASN SER PHE TRP SEQRES 6 B 139 ILE GLY LEU ARG TYR THR LEU PRO ASP MET ASN TRP LYS SEQRES 7 B 139 TRP ILE ASN GLY SER THR LEU ASN SER ASP VAL LEU LYS SEQRES 8 B 139 ILE THR GLY ASP THR GLU ASN ASP SER CYS ALA ALA ILE SEQRES 9 B 139 SER GLY ASP LYS VAL THR PHE GLU SER CYS ASN SER ASP SEQRES 10 B 139 ASN ARG TRP ILE CYS GLN LYS GLU LEU TYR HIS GLU THR SEQRES 11 B 139 LEU SER ASN TYR VAL GLY TYR GLY HIS HET PO4 A 301 5 HET PO4 A 303 5 HET PO4 B 302 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *56(H2 O) HELIX 1 1 THR A 114 LYS A 125 1 12 HELIX 2 2 ASP A 134 LYS A 146 1 13 HELIX 3 3 ASN A 174 LYS A 179 1 6 HELIX 4 4 THR B 114 LYS B 125 1 12 HELIX 5 5 ASP B 134 LYS B 146 1 13 HELIX 6 6 ASN B 174 GLY B 182 1 9 SHEET 1 A 4 LEU A 99 HIS A 101 0 SHEET 2 A 4 LYS A 104 VAL A 108 -1 O PHE A 106 N LEU A 99 SHEET 3 A 4 ARG A 207 GLU A 213 -1 O LYS A 212 N CYS A 105 SHEET 4 A 4 THR A 128 LEU A 129 -1 N THR A 128 O GLN A 211 SHEET 1 B 6 LEU A 99 HIS A 101 0 SHEET 2 B 6 LYS A 104 VAL A 108 -1 O PHE A 106 N LEU A 99 SHEET 3 B 6 ARG A 207 GLU A 213 -1 O LYS A 212 N CYS A 105 SHEET 4 B 6 SER A 151 THR A 159 1 N TRP A 153 O ARG A 207 SHEET 5 B 6 ASP A 187 SER A 193 -1 O ILE A 192 N PHE A 152 SHEET 6 B 6 LYS A 196 SER A 201 -1 O LYS A 196 N SER A 193 SHEET 1 C 4 LEU B 99 HIS B 101 0 SHEET 2 C 4 LYS B 104 VAL B 108 -1 O PHE B 106 N LEU B 99 SHEET 3 C 4 ARG B 207 GLU B 213 -1 O CYS B 210 N ARG B 107 SHEET 4 C 4 THR B 128 LEU B 129 -1 N THR B 128 O GLN B 211 SHEET 1 D 6 LEU B 99 HIS B 101 0 SHEET 2 D 6 LYS B 104 VAL B 108 -1 O PHE B 106 N LEU B 99 SHEET 3 D 6 ARG B 207 GLU B 213 -1 O CYS B 210 N ARG B 107 SHEET 4 D 6 PHE B 152 THR B 159 1 N TRP B 153 O ARG B 207 SHEET 5 D 6 ASP B 187 SER B 193 -1 O ILE B 192 N PHE B 152 SHEET 6 D 6 LYS B 196 GLU B 200 -1 O THR B 198 N ALA B 191 SSBOND 1 CYS A 94 CYS A 105 1555 1555 2.06 SSBOND 2 CYS A 122 CYS A 210 1555 1555 2.10 SSBOND 3 CYS A 189 CYS A 202 1555 1555 2.03 SSBOND 4 CYS B 94 CYS B 105 1555 1555 2.06 SSBOND 5 CYS B 122 CYS B 210 1555 1555 2.09 SSBOND 6 CYS B 189 CYS B 202 1555 1555 2.01 SITE 1 AC1 4 GLN A 110 ASP A 121 LYS A 125 ASP B 97 SITE 1 AC2 5 ASP A 97 ARG A 107 HOH A 467 GLN B 96 SITE 2 AC2 5 ARG B 107 SITE 1 AC3 4 ASP A 97 GLN B 110 ASP B 121 LYS B 125 CRYST1 64.741 64.741 156.096 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006406 0.00000