HEADER TRANSFERASE/DNA 25-JUL-11 3T3F TITLE TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO TITLE 2 AN ABASIC SITE AND DNITP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KLENOW FRAGMENT (UNP RESIDUES 293-832); COMPND 5 SYNONYM: TAQ POLYMERASE 1; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*AP*AP*AP*(3DR)P*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)- COMPND 15 3'; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: DNA TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: POL I, POL1, POLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-21B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS DNA POLYMERASE, ABASIC SITE, TRANSLESION SYNTHESIS, A-RULE, BASE KEYWDS 2 STACKING, DNITP, NITROINDOL TRIPHOSPHATE, BASE ANALOGUE, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.MARX,K.DIEDERICHS,S.OBEID REVDAT 4 13-SEP-23 3T3F 1 COMPND REMARK HETNAM LINK REVDAT 3 13-JUN-12 3T3F 1 JRNL REVDAT 2 22-FEB-12 3T3F 1 JRNL REVDAT 1 15-FEB-12 3T3F 0 JRNL AUTH S.OBEID,W.WELTE,K.DIEDERICHS,A.MARX JRNL TITL AMINO ACID TEMPLATING MECHANISMS IN SELECTION OF NUCLEOTIDES JRNL TITL 2 OPPOSITE ABASIC SITES BY A FAMILY A DNA POLYMERASE. JRNL REF J.BIOL.CHEM. V. 287 14099 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22318723 JRNL DOI 10.1074/JBC.M111.334904 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1653 - 4.9769 1.00 2794 161 0.1936 0.2048 REMARK 3 2 4.9769 - 3.9513 1.00 2705 141 0.1543 0.1860 REMARK 3 3 3.9513 - 3.4521 1.00 2674 159 0.1447 0.1955 REMARK 3 4 3.4521 - 3.1366 1.00 2659 149 0.1512 0.1723 REMARK 3 5 3.1366 - 2.9118 1.00 2670 134 0.1559 0.2010 REMARK 3 6 2.9118 - 2.7402 1.00 2646 138 0.1632 0.1969 REMARK 3 7 2.7402 - 2.6030 1.00 2627 149 0.1616 0.2042 REMARK 3 8 2.6030 - 2.4897 1.00 2660 151 0.1609 0.2184 REMARK 3 9 2.4897 - 2.3938 1.00 2636 126 0.1611 0.1918 REMARK 3 10 2.3938 - 2.3112 1.00 2671 121 0.1648 0.2204 REMARK 3 11 2.3112 - 2.2390 1.00 2604 139 0.1697 0.2146 REMARK 3 12 2.2390 - 2.1750 1.00 2645 124 0.1736 0.2421 REMARK 3 13 2.1750 - 2.1177 1.00 2656 122 0.1884 0.2282 REMARK 3 14 2.1177 - 2.0660 1.00 2597 134 0.1946 0.2536 REMARK 3 15 2.0660 - 2.0191 0.99 2633 143 0.2211 0.2510 REMARK 3 16 2.0191 - 1.9761 1.00 2589 153 0.2426 0.3010 REMARK 3 17 1.9761 - 1.9366 1.00 2611 137 0.2675 0.3065 REMARK 3 18 1.9366 - 1.9000 1.00 2599 144 0.2758 0.3264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.17 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.36980 REMARK 3 B22 (A**2) : 7.36980 REMARK 3 B33 (A**2) : 1.31470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5001 REMARK 3 ANGLE : 1.194 6887 REMARK 3 CHIRALITY : 0.074 751 REMARK 3 PLANARITY : 0.005 795 REMARK 3 DIHEDRAL : 16.170 1923 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 293:433) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9399 -43.6016 -17.8851 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.1655 REMARK 3 T33: 0.2998 T12: -0.1197 REMARK 3 T13: 0.1407 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 1.7090 L22: 1.5086 REMARK 3 L33: 1.1578 L12: 0.3102 REMARK 3 L13: -0.2520 L23: -0.1938 REMARK 3 S TENSOR REMARK 3 S11: -0.1253 S12: 0.0689 S13: -0.4922 REMARK 3 S21: -0.2597 S22: -0.0017 S23: -0.4201 REMARK 3 S31: 0.4330 S32: 0.1978 S33: 0.1159 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 434:623) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2160 -13.6871 -2.7006 REMARK 3 T TENSOR REMARK 3 T11: 0.2175 T22: 0.0845 REMARK 3 T33: 0.1452 T12: -0.0464 REMARK 3 T13: 0.0426 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.1742 L22: 0.8525 REMARK 3 L33: 1.4298 L12: 0.7464 REMARK 3 L13: 0.0204 L23: 0.0529 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: 0.0346 S13: 0.1594 REMARK 3 S21: -0.0699 S22: 0.1186 S23: -0.0209 REMARK 3 S31: -0.5572 S32: -0.0363 S33: -0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 624:682) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7408 -13.9953 -6.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.5106 T22: 0.5614 REMARK 3 T33: 0.3658 T12: 0.3031 REMARK 3 T13: 0.0278 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.4537 L22: 3.0850 REMARK 3 L33: 2.8252 L12: 1.5998 REMARK 3 L13: -0.6504 L23: -2.8533 REMARK 3 S TENSOR REMARK 3 S11: 0.2107 S12: -0.5081 S13: 0.8991 REMARK 3 S21: 0.8372 S22: 0.1583 S23: -0.0723 REMARK 3 S31: -1.2422 S32: -0.2619 S33: 0.2528 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 683:832) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8069 -25.6389 -13.5732 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.2702 REMARK 3 T33: 0.0801 T12: -0.0109 REMARK 3 T13: -0.0022 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.3773 L22: 1.3465 REMARK 3 L33: 2.5027 L12: 0.6363 REMARK 3 L13: -0.1863 L23: -0.5721 REMARK 3 S TENSOR REMARK 3 S11: -0.1257 S12: 0.1998 S13: -0.0195 REMARK 3 S21: -0.1055 S22: 0.1399 S23: 0.1030 REMARK 3 S31: -0.3536 S32: -0.6533 S33: -0.0984 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 37.3981 -23.2931 4.4142 REMARK 3 T TENSOR REMARK 3 T11: 0.1604 T22: 0.2377 REMARK 3 T33: 0.1466 T12: 0.0348 REMARK 3 T13: -0.0103 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 4.7564 L22: 1.2742 REMARK 3 L33: 0.7483 L12: -0.0158 REMARK 3 L13: 0.0790 L23: -0.6131 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.3451 S13: -0.2775 REMARK 3 S21: 0.1652 S22: -0.2020 S23: -0.1479 REMARK 3 S31: -0.1661 S32: 0.6105 S33: 0.0931 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 37.0150 -24.3278 5.4394 REMARK 3 T TENSOR REMARK 3 T11: 0.1085 T22: 0.1475 REMARK 3 T33: 0.1222 T12: 0.0155 REMARK 3 T13: -0.0185 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.7311 L22: 2.0867 REMARK 3 L33: 2.7912 L12: 0.1477 REMARK 3 L13: 0.0621 L23: 0.3622 REMARK 3 S TENSOR REMARK 3 S11: -0.1552 S12: -0.1960 S13: -0.2749 REMARK 3 S21: 0.2239 S22: 0.0306 S23: -0.3044 REMARK 3 S31: 0.0293 S32: 0.0940 S33: 0.1097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000066987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.1_74 REMARK 200 STARTING MODEL: 3KTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HCL, 0.2 M MGFORMATE, 18% REMARK 280 PEG 8000, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.40633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.81267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.81267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.40633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 80 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 230 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 866 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 868 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 647 REMARK 465 GLY A 648 REMARK 465 VAL A 649 REMARK 465 PRO A 650 REMARK 465 ARG A 651 REMARK 465 GLU A 652 REMARK 465 ALA A 653 REMARK 465 DA C 201 REMARK 465 DA C 202 REMARK 465 DA C 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 676 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 677 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 678 CG CD1 CD2 REMARK 470 GLN A 680 CG CD OE1 NE2 REMARK 470 GLU A 681 CG CD OE1 OE2 REMARK 470 LEU A 682 CG CD1 CD2 REMARK 470 PRO A 685 CG CD REMARK 470 TYR A 686 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 687 CG CD OE1 OE2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 GLN A 690 CG CD OE1 NE2 REMARK 470 PHE A 692 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 693 CG1 CG2 CD1 REMARK 470 GLU A 694 CG CD OE1 OE2 REMARK 470 ARG A 695 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 696 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 697 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 216 O HOH A 863 2.06 REMARK 500 O2 GOL C 6 O HOH C 50 2.08 REMARK 500 NH1 ARG A 349 OD2 ASP A 371 2.13 REMARK 500 O HOH A 277 O HOH A 287 2.16 REMARK 500 O GLY A 558 O HOH A 278 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 865 O HOH A 865 6555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 210 O3' DC C 210 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 101 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DA B 102 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC B 103 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC B 109 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG B 110 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 111 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DOC B 112 O3' - P - OP1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DG C 206 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT C 212 O4' - C1' - N1 ANGL. DEV. = -6.4 DEGREES REMARK 500 DG C 214 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DG C 214 C1' - O4' - C4' ANGL. DEV. = -7.2 DEGREES REMARK 500 DG C 214 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 381 110.16 -161.50 REMARK 500 VAL A 433 -69.88 -123.88 REMARK 500 HIS A 480 147.90 -174.60 REMARK 500 TYR A 545 -52.94 -127.01 REMARK 500 VAL A 586 -17.24 -154.68 REMARK 500 ILE A 665 -75.64 -65.92 REMARK 500 ALA A 689 -82.35 -104.27 REMARK 500 GLN A 690 -124.64 55.30 REMARK 500 ALA A 691 -66.69 78.15 REMARK 500 ARG A 695 -29.64 76.56 REMARK 500 HIS A 784 -64.02 71.34 REMARK 500 TYR A 811 99.12 -164.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 833 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 258 O REMARK 620 2 ASP A 610 OD1 77.7 REMARK 620 3 ASP A 610 OD2 114.3 54.0 REMARK 620 4 ASP A 785 OD1 152.7 126.1 92.3 REMARK 620 5 ASP A 785 OD2 144.9 109.0 56.0 47.5 REMARK 620 6 GLU A 786 OE2 83.4 94.5 135.0 81.6 128.7 REMARK 620 7 N5P A 836 O2A 82.5 109.6 76.4 98.9 62.6 148.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 835 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 414 O REMARK 620 2 ASN A 415 O 102.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 834 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD2 REMARK 620 2 TYR A 611 O 81.5 REMARK 620 3 ASP A 785 OD2 75.2 85.5 REMARK 620 4 N5P A 836 O3G 97.0 111.2 160.6 REMARK 620 5 N5P A 836 O2A 87.7 162.2 78.0 84.0 REMARK 620 6 N5P A 836 O2B 155.9 93.0 81.0 106.8 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1402 O REMARK 620 2 HOH B1403 O 90.3 REMARK 620 3 HOH B1404 O 92.1 87.1 REMARK 620 4 HOH B1405 O 85.8 91.8 177.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C1502 O REMARK 620 2 HOH C1503 O 89.0 REMARK 620 3 HOH C1504 O 89.7 91.1 REMARK 620 4 HOH C1505 O 90.4 179.4 88.6 REMARK 620 5 HOH C1506 O 178.1 89.5 89.1 91.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 834 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 835 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N5P A 836 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 837 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 838 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 839 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LWL RELATED DB: PDB DBREF 3T3F A 293 832 UNP P19821 DPO1_THEAQ 293 832 DBREF 3T3F B 101 112 PDB 3T3F 3T3F 101 112 DBREF 3T3F C 201 216 PDB 3T3F 3T3F 201 216 SEQRES 1 A 540 ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA SEQRES 2 A 540 PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP SEQRES 3 A 540 ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG SEQRES 4 A 540 VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP SEQRES 5 A 540 LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER SEQRES 6 A 540 VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY SEQRES 7 A 540 ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER SEQRES 8 A 540 ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY SEQRES 9 A 540 GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER SEQRES 10 A 540 GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY SEQRES 11 A 540 GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG SEQRES 12 A 540 PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY SEQRES 13 A 540 VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU SEQRES 14 A 540 GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL SEQRES 15 A 540 PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG SEQRES 16 A 540 ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU SEQRES 17 A 540 PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER SEQRES 18 A 540 THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS SEQRES 19 A 540 PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR SEQRES 20 A 540 LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU SEQRES 21 A 540 ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN SEQRES 22 A 540 GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP SEQRES 23 A 540 PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY SEQRES 24 A 540 GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP SEQRES 25 A 540 LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG SEQRES 26 A 540 VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG SEQRES 27 A 540 VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SEQRES 28 A 540 SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO SEQRES 29 A 540 LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL SEQRES 30 A 540 LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU SEQRES 31 A 540 ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG SEQRES 32 A 540 TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE GLU SEQRES 33 A 540 LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU SEQRES 34 A 540 THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU SEQRES 35 A 540 ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET SEQRES 36 A 540 ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU SEQRES 37 A 540 MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU SEQRES 38 A 540 GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU SEQRES 39 A 540 LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL SEQRES 40 A 540 ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO SEQRES 41 A 540 LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU SEQRES 42 A 540 ASP TRP LEU SER ALA LYS GLU SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DOC SEQRES 1 C 16 DA DA DA 3DR DG DG DC DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC MODRES 3T3F DOC B 112 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC B 112 18 HET 3DR C 204 11 HET GOL A 1 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 9 6 HET GOL A 10 6 HET GOL A 11 6 HET GOL A 13 6 HET MG A 833 1 HET MG A 834 1 HET NA A 835 1 HET N5P A 836 32 HET FMT A 837 3 HET FMT A 2 3 HET FMT A 838 3 HET FMT A 839 3 HET GOL B 12 6 HET MG B1401 1 HET GOL C 2 6 HET GOL C 5 6 HET GOL C 6 6 HET GOL C 7 6 HET GOL C 8 6 HET MG C1501 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM N5P 1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 N5P PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO- HETNAM 3 N5P PENTOFURANOSYL}-5-NITRO -1H-INDOLE HETNAM FMT FORMIC ACID HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN N5P 5-NITRO-1-INDOLYL-2'-DEOXYRIBOSIDE-5'-TRIPHOSPHATE FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 3 3DR C5 H11 O6 P FORMUL 4 GOL 13(C3 H8 O3) FORMUL 11 MG 4(MG 2+) FORMUL 13 NA NA 1+ FORMUL 14 N5P C13 H17 N2 O14 P3 FORMUL 15 FMT 4(C H2 O2) FORMUL 27 HOH *318(H2 O) HELIX 1 1 GLU A 337 ARG A 343 1 7 HELIX 2 2 LEU A 352 GLU A 363 1 12 HELIX 3 3 ASP A 372 ASP A 381 1 10 HELIX 4 4 THR A 386 GLY A 395 1 10 HELIX 5 5 GLU A 401 LEU A 420 1 20 HELIX 6 6 GLU A 423 VAL A 433 1 11 HELIX 7 7 VAL A 433 GLY A 448 1 16 HELIX 8 8 ASP A 452 GLY A 479 1 28 HELIX 9 9 SER A 486 ASP A 496 1 11 HELIX 10 10 SER A 515 LEU A 522 1 8 HELIX 11 11 PRO A 527 TYR A 545 1 19 HELIX 12 12 PRO A 548 ILE A 553 5 6 HELIX 13 13 THR A 588 ARG A 596 1 9 HELIX 14 14 GLN A 613 GLY A 624 1 12 HELIX 15 15 ASP A 625 GLY A 635 1 11 HELIX 16 16 ILE A 638 MET A 646 1 9 HELIX 17 17 ASP A 655 TYR A 671 1 17 HELIX 18 18 SER A 674 ALA A 683 1 10 HELIX 19 19 ARG A 695 PHE A 700 1 6 HELIX 20 20 PHE A 700 GLY A 718 1 19 HELIX 21 21 PRO A 731 ALA A 735 5 5 HELIX 22 22 VAL A 737 MET A 775 1 39 HELIX 23 23 ARG A 795 GLY A 809 1 15 HELIX 24 24 ASP A 826 LYS A 831 1 6 SHEET 1 A 4 GLU A 295 ALA A 297 0 SHEET 2 A 4 ARG A 331 ARG A 334 1 O VAL A 332 N ALA A 297 SHEET 3 A 4 LEU A 321 ARG A 328 -1 N ALA A 326 O HIS A 333 SHEET 4 A 4 PHE A 306 LEU A 311 -1 N PHE A 306 O ALA A 327 SHEET 1 B 2 ARG A 450 LEU A 451 0 SHEET 2 B 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 C 2 ARG A 563 ASN A 565 0 SHEET 2 C 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 D 4 ARG A 778 GLN A 782 0 SHEET 2 D 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 D 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 D 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 E 2 TYR A 719 GLU A 721 0 SHEET 2 E 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DC B 111 P DOC B 112 1555 1555 1.60 LINK O3' 3DR C 204 P DG C 205 1555 1555 1.61 LINK O HOH A 258 MG MG A 833 1555 1555 2.09 LINK O ALA A 414 NA NA A 835 1555 1555 2.24 LINK O ASN A 415 NA NA A 835 1555 1555 2.36 LINK OD1AASP A 610 MG MG A 833 1555 1555 2.11 LINK OD2AASP A 610 MG MG A 833 1555 1555 2.58 LINK OD2AASP A 610 MG MG A 834 1555 1555 2.09 LINK O TYR A 611 MG MG A 834 1555 1555 2.16 LINK OD1 ASP A 785 MG MG A 833 1555 1555 2.27 LINK OD2 ASP A 785 MG MG A 833 1555 1555 2.95 LINK OD2 ASP A 785 MG MG A 834 1555 1555 2.21 LINK OE2BGLU A 786 MG MG A 833 1555 1555 2.57 LINK MG MG A 833 O2A N5P A 836 1555 1555 2.06 LINK MG MG A 834 O3G N5P A 836 1555 1555 1.82 LINK MG MG A 834 O2A N5P A 836 1555 1555 2.10 LINK MG MG A 834 O2B N5P A 836 1555 1555 2.14 LINK MG MG B1401 O HOH B1402 1555 1555 2.18 LINK MG MG B1401 O HOH B1403 1555 1555 2.18 LINK MG MG B1401 O HOH B1404 1555 1555 2.18 LINK MG MG B1401 O HOH B1405 1555 1555 2.18 LINK MG MG C1501 O HOH C1502 1555 1555 2.18 LINK MG MG C1501 O HOH C1503 1555 1555 2.18 LINK MG MG C1501 O HOH C1504 1555 1555 2.18 LINK MG MG C1501 O HOH C1505 1555 1555 2.18 LINK MG MG C1501 O HOH C1506 1555 1555 2.18 CISPEP 1 TRP A 299 PRO A 300 0 -0.36 CISPEP 2 ASP A 578 PRO A 579 0 5.44 CISPEP 3 GLU A 687 GLU A 688 0 1.32 CISPEP 4 ALA A 689 GLN A 690 0 -2.94 SITE 1 AC1 11 HOH A 191 HOH A 277 THR A 544 TYR A 545 SITE 2 AC1 11 PRO A 548 PRO A 579 ASN A 580 ASN A 583 SITE 3 AC1 11 HOH C 18 DC C 209 DC C 210 SITE 1 AC2 6 HOH A 57 HOH A 62 LYS A 354 ASP A 355 SITE 2 AC2 6 ASN A 565 GLN A 566 SITE 1 AC3 6 HOH A 235 ARG A 313 TRP A 318 ASP A 551 SITE 2 AC3 6 LEU A 552 HOH C 327 SITE 1 AC4 6 GLY A 396 GLU A 397 GLU A 404 ALA A 407 SITE 2 AC4 6 LEU A 408 ARG A 411 SITE 1 AC5 6 HOH A 92 HOH A 180 ARG A 425 PHE A 724 SITE 2 AC5 6 TYR A 811 HOH A 846 SITE 1 AC6 4 ASP A 452 ARG A 596 ILE A 599 ASP A 826 SITE 1 AC7 5 PRO A 336 GLU A 337 LYS A 340 ALA A 341 SITE 2 AC7 5 ASP A 344 SITE 1 AC8 6 HOH A 258 ASP A 610 ASP A 785 GLU A 786 SITE 2 AC8 6 MG A 834 N5P A 836 SITE 1 AC9 5 ASP A 610 TYR A 611 ASP A 785 MG A 833 SITE 2 AC9 5 N5P A 836 SITE 1 BC1 7 PHE A 413 ALA A 414 ASN A 415 LEU A 416 SITE 2 BC1 7 TRP A 417 GLY A 418 ARG A 419 SITE 1 BC2 24 HOH A 69 HOH A 174 HOH A 220 HOH A 223 SITE 2 BC2 24 HOH A 229 HOH A 247 HOH A 258 HOH A 285 SITE 3 BC2 24 ARG A 573 ASP A 610 TYR A 611 SER A 612 SITE 4 BC2 24 GLN A 613 ILE A 614 GLU A 615 HIS A 639 SITE 5 BC2 24 ARG A 659 LYS A 663 PHE A 667 ASP A 785 SITE 6 BC2 24 MG A 833 MG A 834 DOC B 112 DG C 205 SITE 1 BC3 3 HOH A 197 LYS A 767 VAL A 810 SITE 1 BC4 7 HOH A 154 GLU A 337 PRO A 338 TYR A 339 SITE 2 BC4 7 LYS A 340 HOH A 847 DG B 101 SITE 1 BC5 2 HIS A 443 THR A 447 SITE 1 BC6 5 HOH A 264 ARG A 349 ASP A 371 TRP A 417 SITE 2 BC6 5 ARG A 435 SITE 1 BC7 8 LYS A 508 HOH B 40 HOH B 75 DC B 106 SITE 2 BC7 8 DG B 107 HOH B 117 HOH B 136 HOH B 202 SITE 1 BC8 4 HOH B1402 HOH B1403 HOH B1404 HOH B1405 SITE 1 BC9 6 HOH C 19 HOH C 149 HOH C 190 DG C 205 SITE 2 BC9 6 DG C 206 HOH C 217 SITE 1 CC1 9 ASN A 485 DG B 107 HOH B 116 HOH C 153 SITE 2 CC1 9 HOH C 157 DG C 211 DT C 212 HOH C 219 SITE 3 CC1 9 HOH C 286 SITE 1 CC2 4 HOH C 19 HOH C 50 DC C 207 DG C 208 SITE 1 CC3 5 ARG A 556 DC B 103 DG C 214 DT C 215 SITE 2 CC3 5 DC C 216 SITE 1 CC4 4 ARG A 728 DG C 206 DC C 207 HOH C 322 SITE 1 CC5 5 HOH C1502 HOH C1503 HOH C1504 HOH C1505 SITE 2 CC5 5 HOH C1506 CRYST1 109.778 109.778 91.219 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009109 0.005259 0.000000 0.00000 SCALE2 0.000000 0.010519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010963 0.00000