data_3T3Y # _entry.id 3T3Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3T3Y pdb_00003t3y 10.2210/pdb3t3y/pdb RCSB RCSB067006 ? ? WWPDB D_1000067006 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FD8 'Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T' unspecified PDB 2FDF 'Crystal Structure of AlkB in complex with Co(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T' unspecified PDB 2FDG 'Crystal Structure of AlkB in complex with Fe(II), succinate, and methylated trinucleotide T-meA-T' unspecified PDB 2FDH 'Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T' unspecified PDB 2FDI 'Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours)' unspecified PDB 2FDJ 'Crystal Structure of AlkB in complex with Fe(II) and succinate' unspecified PDB 2FDK 'Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 9 days)' unspecified PDB 3BI3 'X-ray structure of AlkB protein bound to dsDNA containing 1meA/A with cofactors' unspecified PDB 3BIE 'X-ray structure of E coli AlkB bound to dsDNA containing 1meA/T with Mn and 2KG' unspecified PDB 3BKZ 'X-ray structure of E coli AlkB crosslinked to dsDNA in the active site' unspecified PDB 3H8O 'Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system' unspecified PDB 3H8R 'Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system' unspecified PDB 3H8X 'Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system' unspecified PDB 3I2O 'Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T' unspecified PDB 3I3M 'Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T' unspecified PDB 3I3Q 'Crystal Structure of AlkB in complex with Mn(II) and 2-oxoglutarate' unspecified PDB 3I49 'Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC-T' unspecified PDB 3KHB 'Crystal structure of Escherichia coli AlkB with Co(II) and 2-OG' unspecified PDB 3KHC 'Crystal Structure of Escherichia coli AlkB in complex with ssDNA containing a 1-methylguanine lesion' unspecified PDB 3O1M 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1O 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1P 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1R 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1S 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1T 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1U 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3O1V 'Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase' unspecified PDB 3T4H . unspecified PDB 3T4V . unspecified # _pdbx_database_status.entry_id 3T3Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-07-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aik, W.S.' 1 'McDonough, M.A.' 2 'Schofield, C.J.' 3 # _citation.id primary _citation.title 'Dynamic combinatorial mass spectrometry leads to inhibitors of a 2-oxoglutarate-dependent nucleic Acid demethylase.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 55 _citation.page_first 2173 _citation.page_last 2184 _citation.year 2012 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22263962 _citation.pdbx_database_id_DOI 10.1021/jm201417e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Woon, E.C.' 1 ? primary 'Demetriades, M.' 2 ? primary 'Bagg, E.A.' 3 ? primary 'Aik, W.' 4 ? primary 'Krylova, S.M.' 5 ? primary 'Ma, J.H.' 6 ? primary 'Chan, M.' 7 ? primary 'Walport, L.J.' 8 ? primary 'Wegman, D.W.' 9 ? primary 'Dack, K.N.' 10 ? primary 'McDonough, M.A.' 11 ? primary 'Krylov, S.N.' 12 ? primary 'Schofield, C.J.' 13 ? # _cell.length_a 36.813 _cell.length_b 38.594 _cell.length_c 40.487 _cell.angle_alpha 71.250 _cell.angle_beta 72.210 _cell.angle_gamma 66.700 _cell.entry_id 3T3Y _cell.pdbx_unique_axis ? _cell.Z_PDB 1 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 3T3Y _symmetry.Int_Tables_number 1 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase AlkB' 22945.236 1 1.14.11.- ? 'Residues 12-216' ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 non-polymer syn 'N-[(3-hydroxypyridin-2-yl)carbonyl]glycine' 196.160 1 ? ? ? ? 4 water nat water 18.015 85 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein AlkB' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL EHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; _entity_poly.pdbx_seq_one_letter_code_can ;MQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP AMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL EHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 GLU n 1 4 PRO n 1 5 LEU n 1 6 ALA n 1 7 ALA n 1 8 GLY n 1 9 ALA n 1 10 VAL n 1 11 ILE n 1 12 LEU n 1 13 ARG n 1 14 ARG n 1 15 PHE n 1 16 ALA n 1 17 PHE n 1 18 ASN n 1 19 ALA n 1 20 ALA n 1 21 GLU n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 ARG n 1 26 ASP n 1 27 ILE n 1 28 ASN n 1 29 ASP n 1 30 VAL n 1 31 ALA n 1 32 SER n 1 33 GLN n 1 34 SER n 1 35 PRO n 1 36 PHE n 1 37 ARG n 1 38 GLN n 1 39 MET n 1 40 VAL n 1 41 THR n 1 42 PRO n 1 43 GLY n 1 44 GLY n 1 45 TYR n 1 46 THR n 1 47 MET n 1 48 SER n 1 49 VAL n 1 50 ALA n 1 51 MET n 1 52 THR n 1 53 ASN n 1 54 CYS n 1 55 GLY n 1 56 HIS n 1 57 LEU n 1 58 GLY n 1 59 TRP n 1 60 THR n 1 61 THR n 1 62 HIS n 1 63 ARG n 1 64 GLN n 1 65 GLY n 1 66 TYR n 1 67 LEU n 1 68 TYR n 1 69 SER n 1 70 PRO n 1 71 ILE n 1 72 ASP n 1 73 PRO n 1 74 GLN n 1 75 THR n 1 76 ASN n 1 77 LYS n 1 78 PRO n 1 79 TRP n 1 80 PRO n 1 81 ALA n 1 82 MET n 1 83 PRO n 1 84 GLN n 1 85 SER n 1 86 PHE n 1 87 HIS n 1 88 ASN n 1 89 LEU n 1 90 CYS n 1 91 GLN n 1 92 ARG n 1 93 ALA n 1 94 ALA n 1 95 THR n 1 96 ALA n 1 97 ALA n 1 98 GLY n 1 99 TYR n 1 100 PRO n 1 101 ASP n 1 102 PHE n 1 103 GLN n 1 104 PRO n 1 105 ASP n 1 106 ALA n 1 107 CYS n 1 108 LEU n 1 109 ILE n 1 110 ASN n 1 111 ARG n 1 112 TYR n 1 113 ALA n 1 114 PRO n 1 115 GLY n 1 116 ALA n 1 117 LYS n 1 118 LEU n 1 119 SER n 1 120 LEU n 1 121 HIS n 1 122 GLN n 1 123 ASP n 1 124 LYS n 1 125 ASP n 1 126 GLU n 1 127 PRO n 1 128 ASP n 1 129 LEU n 1 130 ARG n 1 131 ALA n 1 132 PRO n 1 133 ILE n 1 134 VAL n 1 135 SER n 1 136 VAL n 1 137 SER n 1 138 LEU n 1 139 GLY n 1 140 LEU n 1 141 PRO n 1 142 ALA n 1 143 ILE n 1 144 PHE n 1 145 GLN n 1 146 PHE n 1 147 GLY n 1 148 GLY n 1 149 LEU n 1 150 LYS n 1 151 ARG n 1 152 ASN n 1 153 ASP n 1 154 PRO n 1 155 LEU n 1 156 LYS n 1 157 ARG n 1 158 LEU n 1 159 LEU n 1 160 LEU n 1 161 GLU n 1 162 HIS n 1 163 GLY n 1 164 ASP n 1 165 VAL n 1 166 VAL n 1 167 VAL n 1 168 TRP n 1 169 GLY n 1 170 GLY n 1 171 GLU n 1 172 SER n 1 173 ARG n 1 174 LEU n 1 175 PHE n 1 176 TYR n 1 177 HIS n 1 178 GLY n 1 179 ILE n 1 180 GLN n 1 181 PRO n 1 182 LEU n 1 183 LYS n 1 184 ALA n 1 185 GLY n 1 186 PHE n 1 187 HIS n 1 188 PRO n 1 189 LEU n 1 190 THR n 1 191 ILE n 1 192 ASP n 1 193 CYS n 1 194 ARG n 1 195 TYR n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 GLN n 1 202 ALA n 1 203 GLY n 1 204 LYS n 1 205 LYS n 1 206 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'aidD, alkB, b2212, JW2200' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET24a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ALKB_ECOLI _struct_ref.pdbx_db_accession P05050 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPA MPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLE HGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE ; _struct_ref.pdbx_align_begin 12 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3T3Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05050 _struct_ref_seq.db_align_beg 12 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 216 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 216 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3T3Y _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P05050 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 11 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MD6 'peptide linking' n 'N-[(3-hydroxypyridin-2-yl)carbonyl]glycine' ? 'C8 H8 N2 O4' 196.160 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3T3Y _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;25% PEG 3350, 0.1M bis-tris pH6.5, 0.44mM ammonium iron(II) sulphate, 1mM 2-(3-hydroxypicolinomido)acetic acid, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2011-05-05 _diffrn_detector.details 'osmic HF' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5412 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5412 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3T3Y _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 50.000 _reflns.number_obs 12688 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_netI_over_sigmaI 28.300 _reflns.pdbx_chi_squared 1.092 _reflns.pdbx_redundancy 3.700 _reflns.percent_possible_obs 99.200 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 1.0 _reflns.number_all 46973 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 29.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.070 ? ? ? 0.218 4.307 ? 1.315 3.200 ? 1260 97.900 1 1 2.070 2.150 ? ? ? 0.150 6.321 ? 1.046 3.700 ? 1260 98.500 2 1 2.150 2.250 ? ? ? 0.115 9.195 ? 1.052 3.700 ? 1252 99.000 3 1 2.250 2.370 ? ? ? 0.100 10.713 ? 1.078 3.700 ? 1263 98.900 4 1 2.370 2.520 ? ? ? 0.085 13.292 ? 1.120 3.700 ? 1282 99.400 5 1 2.520 2.710 ? ? ? 0.072 15.242 ? 1.062 3.800 ? 1277 99.700 6 1 2.710 2.990 ? ? ? 0.056 19.615 ? 1.009 3.800 ? 1278 100.000 7 1 2.990 3.420 ? ? ? 0.043 25.615 ? 1.000 3.800 ? 1269 99.900 8 1 3.420 4.310 ? ? ? 0.034 35.817 ? 1.187 3.800 ? 1278 100.000 9 1 4.310 50.000 ? ? ? 0.029 36.225 ? 1.095 3.800 ? 1269 98.800 10 1 # _refine.entry_id 3T3Y _refine.ls_d_res_high 2.0010 _refine.ls_d_res_low 22.9130 _refine.pdbx_ls_sigma_F 1.980 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.1300 _refine.ls_number_reflns_obs 12687 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1837 _refine.ls_R_factor_R_work 0.1816 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2207 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0400 _refine.ls_number_reflns_R_free 639 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.7623 _refine.solvent_model_param_bsol 46.2060 _refine.solvent_model_param_ksol 0.3760 _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] -2.7799 _refine.aniso_B[2][2] 0.1562 _refine.aniso_B[3][3] 2.6237 _refine.aniso_B[1][2] 5.5295 _refine.aniso_B[1][3] 0.3040 _refine.aniso_B[2][3] -4.1363 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4500 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.0000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.7200 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3T4H _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8400 _refine.B_iso_max 101.860 _refine.B_iso_min 14.570 _refine.pdbx_overall_phase_error 23.4800 _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1504 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 1604 _refine_hist.d_res_high 2.0010 _refine_hist.d_res_low 22.9130 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1588 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2174 1.254 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 227 0.068 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 292 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 574 14.684 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.0013 2.1557 5 98.0000 2379 . 0.2179 0.2895 . 129 . 2508 2508 . 'X-RAY DIFFRACTION' 2.1557 2.3724 5 99.0000 2393 . 0.1891 0.2327 . 121 . 2514 2514 . 'X-RAY DIFFRACTION' 2.3724 2.7152 5 100.0000 2433 . 0.2046 0.2847 . 128 . 2561 2561 . 'X-RAY DIFFRACTION' 2.7152 3.4191 5 100.0000 2425 . 0.1803 0.2200 . 131 . 2556 2556 . 'X-RAY DIFFRACTION' 3.4191 22.9143 5 100.0000 2418 . 0.1674 0.1893 . 130 . 2548 2548 . 'X-RAY DIFFRACTION' # _struct.entry_id 3T3Y _struct.title 'Crystal structure of AlkB in complex with Fe(III) and 2-(3-hydroxypicolinomido)acetic acid' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T3Y _struct_keywords.pdbx_keywords 'OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR' _struct_keywords.text 'Double-stranded beta-helix, Nucleic acid demethylase, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 19 ? SER A 34 ? ALA A 29 SER A 44 1 ? 16 HELX_P HELX_P2 2 PRO A 83 ? ALA A 97 ? PRO A 93 ALA A 107 1 ? 15 HELX_P HELX_P3 3 GLY A 170 ? PHE A 175 ? GLY A 180 PHE A 185 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D HOH . O ? ? ? 1_555 B FE . FE ? ? A HOH 1 A FE 300 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc2 metalc ? ? A HIS 121 NE2 ? ? ? 1_555 B FE . FE ? ? A HIS 131 A FE 300 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc3 metalc ? ? A ASP 123 OD1 ? ? ? 1_555 B FE . FE ? ? A ASP 133 A FE 300 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc4 metalc ? ? A HIS 177 NE2 ? ? ? 1_555 B FE . FE ? ? A HIS 187 A FE 300 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc5 metalc ? ? B FE . FE ? ? ? 1_555 C MD6 . N2 ? ? A FE 300 A MD6 401 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc6 metalc ? ? B FE . FE ? ? ? 1_555 C MD6 . O3 ? ? A FE 300 A MD6 401 1_555 ? ? ? ? ? ? ? 2.254 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 9 ? LEU A 12 ? ALA A 19 LEU A 22 A 2 VAL A 165 ? TRP A 168 ? VAL A 175 TRP A 178 A 3 ILE A 133 ? GLY A 139 ? ILE A 143 GLY A 149 A 4 ARG A 194 ? ARG A 200 ? ARG A 204 ARG A 210 A 5 ALA A 106 ? TYR A 112 ? ALA A 116 TYR A 122 A 6 ALA A 50 ? CYS A 54 ? ALA A 60 CYS A 64 B 1 GLY A 58 ? THR A 61 ? GLY A 68 THR A 71 B 2 TYR A 66 ? SER A 69 ? TYR A 76 SER A 79 C 1 ILE A 71 ? ASP A 72 ? ILE A 81 ASP A 82 C 2 LYS A 77 ? PRO A 78 ? LYS A 87 PRO A 88 D 1 LEU A 118 ? HIS A 121 ? LEU A 128 HIS A 131 D 2 HIS A 177 ? ILE A 179 ? HIS A 187 ILE A 189 D 3 ALA A 142 ? PHE A 146 ? ALA A 152 PHE A 156 D 4 LYS A 156 ? LEU A 160 ? LYS A 166 LEU A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 12 ? N LEU A 22 O VAL A 165 ? O VAL A 175 A 2 3 O TRP A 168 ? O TRP A 178 N ILE A 133 ? N ILE A 143 A 3 4 N VAL A 134 ? N VAL A 144 O PHE A 199 ? O PHE A 209 A 4 5 O ARG A 194 ? O ARG A 204 N TYR A 112 ? N TYR A 122 A 5 6 O ILE A 109 ? O ILE A 119 N THR A 52 ? N THR A 62 B 1 2 N GLY A 58 ? N GLY A 68 O SER A 69 ? O SER A 79 C 1 2 N ASP A 72 ? N ASP A 82 O LYS A 77 ? O LYS A 87 D 1 2 N LEU A 118 ? N LEU A 128 O ILE A 179 ? O ILE A 189 D 2 3 O GLY A 178 ? O GLY A 188 N GLN A 145 ? N GLN A 155 D 3 4 N ALA A 142 ? N ALA A 152 O LEU A 160 ? O LEU A 170 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FE 300 ? 5 'BINDING SITE FOR RESIDUE FE A 300' AC2 Software A MD6 401 ? 15 'BINDING SITE FOR RESIDUE MD6 A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH D . ? HOH A 1 . ? 1_555 ? 2 AC1 5 HIS A 121 ? HIS A 131 . ? 1_555 ? 3 AC1 5 ASP A 123 ? ASP A 133 . ? 1_555 ? 4 AC1 5 HIS A 177 ? HIS A 187 . ? 1_555 ? 5 AC1 5 MD6 C . ? MD6 A 401 . ? 1_555 ? 6 AC2 15 HOH D . ? HOH A 1 . ? 1_555 ? 7 AC2 15 HOH D . ? HOH A 2 . ? 1_555 ? 8 AC2 15 TYR A 112 ? TYR A 122 . ? 1_555 ? 9 AC2 15 LEU A 118 ? LEU A 128 . ? 1_555 ? 10 AC2 15 HIS A 121 ? HIS A 131 . ? 1_555 ? 11 AC2 15 ASP A 123 ? ASP A 133 . ? 1_555 ? 12 AC2 15 ILE A 133 ? ILE A 143 . ? 1_555 ? 13 AC2 15 SER A 135 ? SER A 145 . ? 1_555 ? 14 AC2 15 TRP A 168 ? TRP A 178 . ? 1_555 ? 15 AC2 15 HIS A 177 ? HIS A 187 . ? 1_555 ? 16 AC2 15 ILE A 179 ? ILE A 189 . ? 1_555 ? 17 AC2 15 ARG A 194 ? ARG A 204 . ? 1_555 ? 18 AC2 15 ASN A 196 ? ASN A 206 . ? 1_555 ? 19 AC2 15 HOH D . ? HOH A 281 . ? 1_555 ? 20 AC2 15 FE B . ? FE A 300 . ? 1_555 ? # _atom_sites.entry_id 3T3Y _atom_sites.fract_transf_matrix[1][1] 0.027164 _atom_sites.fract_transf_matrix[1][2] -0.011701 _atom_sites.fract_transf_matrix[1][3] -0.006197 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028212 _atom_sites.fract_transf_matrix[2][3] -0.006649 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026650 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 11 ? ? ? A . n A 1 2 GLN 2 12 ? ? ? A . n A 1 3 GLU 3 13 ? ? ? A . n A 1 4 PRO 4 14 ? ? ? A . n A 1 5 LEU 5 15 ? ? ? A . n A 1 6 ALA 6 16 16 ALA ALA A . n A 1 7 ALA 7 17 17 ALA ALA A . n A 1 8 GLY 8 18 18 GLY GLY A . n A 1 9 ALA 9 19 19 ALA ALA A . n A 1 10 VAL 10 20 20 VAL VAL A . n A 1 11 ILE 11 21 21 ILE ILE A . n A 1 12 LEU 12 22 22 LEU LEU A . n A 1 13 ARG 13 23 23 ARG ARG A . n A 1 14 ARG 14 24 24 ARG ARG A . n A 1 15 PHE 15 25 25 PHE PHE A . n A 1 16 ALA 16 26 26 ALA ALA A . n A 1 17 PHE 17 27 27 PHE PHE A . n A 1 18 ASN 18 28 28 ASN ASN A . n A 1 19 ALA 19 29 29 ALA ALA A . n A 1 20 ALA 20 30 30 ALA ALA A . n A 1 21 GLU 21 31 31 GLU GLU A . n A 1 22 GLN 22 32 32 GLN GLN A . n A 1 23 LEU 23 33 33 LEU LEU A . n A 1 24 ILE 24 34 34 ILE ILE A . n A 1 25 ARG 25 35 35 ARG ARG A . n A 1 26 ASP 26 36 36 ASP ASP A . n A 1 27 ILE 27 37 37 ILE ILE A . n A 1 28 ASN 28 38 38 ASN ASN A . n A 1 29 ASP 29 39 39 ASP ASP A . n A 1 30 VAL 30 40 40 VAL VAL A . n A 1 31 ALA 31 41 41 ALA ALA A . n A 1 32 SER 32 42 42 SER SER A . n A 1 33 GLN 33 43 43 GLN GLN A . n A 1 34 SER 34 44 44 SER SER A . n A 1 35 PRO 35 45 45 PRO PRO A . n A 1 36 PHE 36 46 46 PHE PHE A . n A 1 37 ARG 37 47 47 ARG ARG A . n A 1 38 GLN 38 48 48 GLN GLN A . n A 1 39 MET 39 49 49 MET MET A . n A 1 40 VAL 40 50 50 VAL VAL A . n A 1 41 THR 41 51 51 THR THR A . n A 1 42 PRO 42 52 52 PRO PRO A . n A 1 43 GLY 43 53 53 GLY GLY A . n A 1 44 GLY 44 54 54 GLY GLY A . n A 1 45 TYR 45 55 55 TYR TYR A . n A 1 46 THR 46 56 56 THR THR A . n A 1 47 MET 47 57 57 MET MET A . n A 1 48 SER 48 58 58 SER SER A . n A 1 49 VAL 49 59 59 VAL VAL A . n A 1 50 ALA 50 60 60 ALA ALA A . n A 1 51 MET 51 61 61 MET MET A . n A 1 52 THR 52 62 62 THR THR A . n A 1 53 ASN 53 63 63 ASN ASN A . n A 1 54 CYS 54 64 64 CYS CYS A . n A 1 55 GLY 55 65 65 GLY GLY A . n A 1 56 HIS 56 66 66 HIS HIS A . n A 1 57 LEU 57 67 67 LEU LEU A . n A 1 58 GLY 58 68 68 GLY GLY A . n A 1 59 TRP 59 69 69 TRP TRP A . n A 1 60 THR 60 70 70 THR THR A . n A 1 61 THR 61 71 71 THR THR A . n A 1 62 HIS 62 72 72 HIS HIS A . n A 1 63 ARG 63 73 73 ARG ARG A . n A 1 64 GLN 64 74 74 GLN GLN A . n A 1 65 GLY 65 75 75 GLY GLY A . n A 1 66 TYR 66 76 76 TYR TYR A . n A 1 67 LEU 67 77 77 LEU LEU A . n A 1 68 TYR 68 78 78 TYR TYR A . n A 1 69 SER 69 79 79 SER SER A . n A 1 70 PRO 70 80 80 PRO PRO A . n A 1 71 ILE 71 81 81 ILE ILE A . n A 1 72 ASP 72 82 82 ASP ASP A . n A 1 73 PRO 73 83 83 PRO PRO A . n A 1 74 GLN 74 84 84 GLN GLN A . n A 1 75 THR 75 85 85 THR THR A . n A 1 76 ASN 76 86 86 ASN ASN A . n A 1 77 LYS 77 87 87 LYS LYS A . n A 1 78 PRO 78 88 88 PRO PRO A . n A 1 79 TRP 79 89 89 TRP TRP A . n A 1 80 PRO 80 90 90 PRO PRO A . n A 1 81 ALA 81 91 91 ALA ALA A . n A 1 82 MET 82 92 92 MET MET A . n A 1 83 PRO 83 93 93 PRO PRO A . n A 1 84 GLN 84 94 94 GLN GLN A . n A 1 85 SER 85 95 95 SER SER A . n A 1 86 PHE 86 96 96 PHE PHE A . n A 1 87 HIS 87 97 97 HIS HIS A . n A 1 88 ASN 88 98 98 ASN ASN A . n A 1 89 LEU 89 99 99 LEU LEU A . n A 1 90 CYS 90 100 100 CYS CYS A . n A 1 91 GLN 91 101 101 GLN GLN A . n A 1 92 ARG 92 102 102 ARG ARG A . n A 1 93 ALA 93 103 103 ALA ALA A . n A 1 94 ALA 94 104 104 ALA ALA A . n A 1 95 THR 95 105 105 THR THR A . n A 1 96 ALA 96 106 106 ALA ALA A . n A 1 97 ALA 97 107 107 ALA ALA A . n A 1 98 GLY 98 108 108 GLY GLY A . n A 1 99 TYR 99 109 109 TYR TYR A . n A 1 100 PRO 100 110 110 PRO PRO A . n A 1 101 ASP 101 111 111 ASP ASP A . n A 1 102 PHE 102 112 112 PHE PHE A . n A 1 103 GLN 103 113 113 GLN GLN A . n A 1 104 PRO 104 114 114 PRO PRO A . n A 1 105 ASP 105 115 115 ASP ASP A . n A 1 106 ALA 106 116 116 ALA ALA A . n A 1 107 CYS 107 117 117 CYS CYS A . n A 1 108 LEU 108 118 118 LEU LEU A . n A 1 109 ILE 109 119 119 ILE ILE A . n A 1 110 ASN 110 120 120 ASN ASN A . n A 1 111 ARG 111 121 121 ARG ARG A . n A 1 112 TYR 112 122 122 TYR TYR A . n A 1 113 ALA 113 123 123 ALA ALA A . n A 1 114 PRO 114 124 124 PRO PRO A . n A 1 115 GLY 115 125 125 GLY GLY A . n A 1 116 ALA 116 126 126 ALA ALA A . n A 1 117 LYS 117 127 127 LYS LYS A . n A 1 118 LEU 118 128 128 LEU LEU A . n A 1 119 SER 119 129 129 SER SER A . n A 1 120 LEU 120 130 130 LEU LEU A . n A 1 121 HIS 121 131 131 HIS HIS A . n A 1 122 GLN 122 132 132 GLN GLN A . n A 1 123 ASP 123 133 133 ASP ASP A . n A 1 124 LYS 124 134 134 LYS LYS A . n A 1 125 ASP 125 135 135 ASP ASP A . n A 1 126 GLU 126 136 136 GLU GLU A . n A 1 127 PRO 127 137 137 PRO PRO A . n A 1 128 ASP 128 138 138 ASP ASP A . n A 1 129 LEU 129 139 139 LEU LEU A . n A 1 130 ARG 130 140 140 ARG ARG A . n A 1 131 ALA 131 141 141 ALA ALA A . n A 1 132 PRO 132 142 142 PRO PRO A . n A 1 133 ILE 133 143 143 ILE ILE A . n A 1 134 VAL 134 144 144 VAL VAL A . n A 1 135 SER 135 145 145 SER SER A . n A 1 136 VAL 136 146 146 VAL VAL A . n A 1 137 SER 137 147 147 SER SER A . n A 1 138 LEU 138 148 148 LEU LEU A . n A 1 139 GLY 139 149 149 GLY GLY A . n A 1 140 LEU 140 150 150 LEU LEU A . n A 1 141 PRO 141 151 151 PRO PRO A . n A 1 142 ALA 142 152 152 ALA ALA A . n A 1 143 ILE 143 153 153 ILE ILE A . n A 1 144 PHE 144 154 154 PHE PHE A . n A 1 145 GLN 145 155 155 GLN GLN A . n A 1 146 PHE 146 156 156 PHE PHE A . n A 1 147 GLY 147 157 157 GLY GLY A . n A 1 148 GLY 148 158 158 GLY GLY A . n A 1 149 LEU 149 159 159 LEU LEU A . n A 1 150 LYS 150 160 160 LYS LYS A . n A 1 151 ARG 151 161 161 ARG ARG A . n A 1 152 ASN 152 162 162 ASN ASN A . n A 1 153 ASP 153 163 163 ASP ASP A . n A 1 154 PRO 154 164 164 PRO PRO A . n A 1 155 LEU 155 165 165 LEU LEU A . n A 1 156 LYS 156 166 166 LYS LYS A . n A 1 157 ARG 157 167 167 ARG ARG A . n A 1 158 LEU 158 168 168 LEU LEU A . n A 1 159 LEU 159 169 169 LEU LEU A . n A 1 160 LEU 160 170 170 LEU LEU A . n A 1 161 GLU 161 171 171 GLU GLU A . n A 1 162 HIS 162 172 172 HIS HIS A . n A 1 163 GLY 163 173 173 GLY GLY A . n A 1 164 ASP 164 174 174 ASP ASP A . n A 1 165 VAL 165 175 175 VAL VAL A . n A 1 166 VAL 166 176 176 VAL VAL A . n A 1 167 VAL 167 177 177 VAL VAL A . n A 1 168 TRP 168 178 178 TRP TRP A . n A 1 169 GLY 169 179 179 GLY GLY A . n A 1 170 GLY 170 180 180 GLY GLY A . n A 1 171 GLU 171 181 181 GLU GLU A . n A 1 172 SER 172 182 182 SER SER A . n A 1 173 ARG 173 183 183 ARG ARG A . n A 1 174 LEU 174 184 184 LEU LEU A . n A 1 175 PHE 175 185 185 PHE PHE A . n A 1 176 TYR 176 186 186 TYR TYR A . n A 1 177 HIS 177 187 187 HIS HIS A . n A 1 178 GLY 178 188 188 GLY GLY A . n A 1 179 ILE 179 189 189 ILE ILE A . n A 1 180 GLN 180 190 190 GLN GLN A . n A 1 181 PRO 181 191 191 PRO PRO A . n A 1 182 LEU 182 192 192 LEU LEU A . n A 1 183 LYS 183 193 193 LYS LYS A . n A 1 184 ALA 184 194 194 ALA ALA A . n A 1 185 GLY 185 195 195 GLY GLY A . n A 1 186 PHE 186 196 196 PHE PHE A . n A 1 187 HIS 187 197 197 HIS HIS A . n A 1 188 PRO 188 198 198 PRO PRO A . n A 1 189 LEU 189 199 199 LEU LEU A . n A 1 190 THR 190 200 200 THR THR A . n A 1 191 ILE 191 201 201 ILE ILE A . n A 1 192 ASP 192 202 202 ASP ASP A . n A 1 193 CYS 193 203 203 CYS CYS A . n A 1 194 ARG 194 204 204 ARG ARG A . n A 1 195 TYR 195 205 205 TYR TYR A . n A 1 196 ASN 196 206 206 ASN ASN A . n A 1 197 LEU 197 207 207 LEU LEU A . n A 1 198 THR 198 208 208 THR THR A . n A 1 199 PHE 199 209 209 PHE PHE A . n A 1 200 ARG 200 210 210 ARG ARG A . n A 1 201 GLN 201 211 211 GLN GLN A . n A 1 202 ALA 202 212 212 ALA ALA A . n A 1 203 GLY 203 213 213 GLY GLY A . n A 1 204 LYS 204 214 214 LYS LYS A . n A 1 205 LYS 205 215 ? ? ? A . n A 1 206 GLU 206 216 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 300 300 FE FE A . C 3 MD6 1 401 401 MD6 MD6 A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 4 4 HOH HOH A . D 4 HOH 4 5 5 HOH HOH A . D 4 HOH 5 6 6 HOH HOH A . D 4 HOH 6 7 7 HOH HOH A . D 4 HOH 7 8 8 HOH HOH A . D 4 HOH 8 9 9 HOH HOH A . D 4 HOH 9 10 10 HOH HOH A . D 4 HOH 10 217 11 HOH HOH A . D 4 HOH 11 218 12 HOH HOH A . D 4 HOH 12 219 13 HOH HOH A . D 4 HOH 13 220 14 HOH HOH A . D 4 HOH 14 221 15 HOH HOH A . D 4 HOH 15 222 16 HOH HOH A . D 4 HOH 16 223 17 HOH HOH A . D 4 HOH 17 224 18 HOH HOH A . D 4 HOH 18 225 19 HOH HOH A . D 4 HOH 19 226 20 HOH HOH A . D 4 HOH 20 227 21 HOH HOH A . D 4 HOH 21 228 22 HOH HOH A . D 4 HOH 22 229 23 HOH HOH A . D 4 HOH 23 230 24 HOH HOH A . D 4 HOH 24 231 25 HOH HOH A . D 4 HOH 25 232 26 HOH HOH A . D 4 HOH 26 233 27 HOH HOH A . D 4 HOH 27 234 28 HOH HOH A . D 4 HOH 28 235 29 HOH HOH A . D 4 HOH 29 236 31 HOH HOH A . D 4 HOH 30 237 33 HOH HOH A . D 4 HOH 31 238 34 HOH HOH A . D 4 HOH 32 239 39 HOH HOH A . D 4 HOH 33 240 41 HOH HOH A . D 4 HOH 34 241 42 HOH HOH A . D 4 HOH 35 242 44 HOH HOH A . D 4 HOH 36 243 47 HOH HOH A . D 4 HOH 37 244 48 HOH HOH A . D 4 HOH 38 245 51 HOH HOH A . D 4 HOH 39 246 52 HOH HOH A . D 4 HOH 40 247 53 HOH HOH A . D 4 HOH 41 248 54 HOH HOH A . D 4 HOH 42 249 55 HOH HOH A . D 4 HOH 43 250 56 HOH HOH A . D 4 HOH 44 251 57 HOH HOH A . D 4 HOH 45 252 58 HOH HOH A . D 4 HOH 46 253 60 HOH HOH A . D 4 HOH 47 254 61 HOH HOH A . D 4 HOH 48 255 62 HOH HOH A . D 4 HOH 49 256 63 HOH HOH A . D 4 HOH 50 257 65 HOH HOH A . D 4 HOH 51 258 66 HOH HOH A . D 4 HOH 52 259 67 HOH HOH A . D 4 HOH 53 260 68 HOH HOH A . D 4 HOH 54 261 69 HOH HOH A . D 4 HOH 55 262 71 HOH HOH A . D 4 HOH 56 263 72 HOH HOH A . D 4 HOH 57 264 77 HOH HOH A . D 4 HOH 58 265 79 HOH HOH A . D 4 HOH 59 266 80 HOH HOH A . D 4 HOH 60 267 83 HOH HOH A . D 4 HOH 61 268 85 HOH HOH A . D 4 HOH 62 269 86 HOH HOH A . D 4 HOH 63 270 87 HOH HOH A . D 4 HOH 64 271 89 HOH HOH A . D 4 HOH 65 272 90 HOH HOH A . D 4 HOH 66 273 92 HOH HOH A . D 4 HOH 67 274 96 HOH HOH A . D 4 HOH 68 275 97 HOH HOH A . D 4 HOH 69 276 99 HOH HOH A . D 4 HOH 70 277 100 HOH HOH A . D 4 HOH 71 278 102 HOH HOH A . D 4 HOH 72 279 103 HOH HOH A . D 4 HOH 73 280 107 HOH HOH A . D 4 HOH 74 281 110 HOH HOH A . D 4 HOH 75 282 111 HOH HOH A . D 4 HOH 76 283 112 HOH HOH A . D 4 HOH 77 284 113 HOH HOH A . D 4 HOH 78 285 114 HOH HOH A . D 4 HOH 79 286 115 HOH HOH A . D 4 HOH 80 287 120 HOH HOH A . D 4 HOH 81 288 124 HOH HOH A . D 4 HOH 82 289 125 HOH HOH A . D 4 HOH 83 290 126 HOH HOH A . D 4 HOH 84 291 127 HOH HOH A . D 4 HOH 85 292 129 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 1 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 93.6 ? 2 O ? D HOH . ? A HOH 1 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 87.8 ? 3 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 94.0 ? 4 O ? D HOH . ? A HOH 1 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 174.0 ? 5 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 89.6 ? 6 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 87.0 ? 7 O ? D HOH . ? A HOH 1 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 N2 ? C MD6 . ? A MD6 401 ? 1_555 103.1 ? 8 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 N2 ? C MD6 . ? A MD6 401 ? 1_555 161.3 ? 9 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 N2 ? C MD6 . ? A MD6 401 ? 1_555 94.9 ? 10 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 N2 ? C MD6 . ? A MD6 401 ? 1_555 74.5 ? 11 O ? D HOH . ? A HOH 1 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 O3 ? C MD6 . ? A MD6 401 ? 1_555 84.5 ? 12 NE2 ? A HIS 121 ? A HIS 131 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 O3 ? C MD6 . ? A MD6 401 ? 1_555 99.9 ? 13 OD1 ? A ASP 123 ? A ASP 133 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 O3 ? C MD6 . ? A MD6 401 ? 1_555 164.6 ? 14 NE2 ? A HIS 177 ? A HIS 187 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 O3 ? C MD6 . ? A MD6 401 ? 1_555 99.9 ? 15 N2 ? C MD6 . ? A MD6 401 ? 1_555 FE ? B FE . ? A FE 300 ? 1_555 O3 ? C MD6 . ? A MD6 401 ? 1_555 74.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-07 2 'Structure model' 1 1 2012-03-21 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_ref_seq_dif.details' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 0.5899 -1.9663 -6.1961 0.2076 0.1989 0.1991 -0.0178 0.0658 0.0267 3.4774 3.4013 1.5860 -1.1519 1.1404 1.5355 0.1603 -0.2561 -0.0383 0.1495 -0.2193 0.3401 -0.0878 0.0935 -0.1128 'X-RAY DIFFRACTION' 2 ? refined 3.5766 -11.6997 5.6565 0.5222 0.5133 0.4772 0.1231 0.2132 0.1868 4.0431 2.7062 2.9126 3.2988 -0.7669 -0.4266 -0.3988 0.1748 0.2669 -0.8418 -1.1618 0.4521 0.6854 0.6502 -0.6464 'X-RAY DIFFRACTION' 3 ? refined 8.9112 -1.8198 -2.2628 0.1027 0.1774 0.3070 0.0011 -0.0108 -0.0424 2.7374 2.5663 1.8764 -1.1053 -0.9407 -0.0825 -0.0658 0.0930 -0.0206 -0.2883 0.2948 -0.5051 0.0576 -0.0037 0.3039 'X-RAY DIFFRACTION' 4 ? refined -4.4551 4.1007 0.9721 0.1662 0.1900 0.1112 0.0194 -0.0133 0.0117 3.9792 3.9477 1.0816 -1.6225 -1.1108 0.2572 -0.1460 0.2162 -0.0634 -0.3400 -0.2360 0.1937 0.3809 0.0205 0.0937 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resseq 16:65) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resseq 66:79) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resseq 80:122) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resseq 123:214) ; ? ? ? ? ? # _pdbx_phasing_MR.entry_id 3T3Y _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 22.910 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 22.910 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.3.0 'Thu Apr 28 01:19:09 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.7.1_743 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 CrystalClear . ? ? ? ? 'data collection' ? ? ? 7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 230 ? ? O A HOH 260 ? ? 2.17 2 1 OE1 A GLN 94 ? ? O A HOH 292 ? ? 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 201 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 69.47 _pdbx_validate_torsion.psi -96.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 55 ? CB ? A TYR 45 CB 2 1 Y 1 A TYR 55 ? CG ? A TYR 45 CG 3 1 Y 1 A TYR 55 ? CD1 ? A TYR 45 CD1 4 1 Y 1 A TYR 55 ? CD2 ? A TYR 45 CD2 5 1 Y 1 A TYR 55 ? CE1 ? A TYR 45 CE1 6 1 Y 1 A TYR 55 ? CE2 ? A TYR 45 CE2 7 1 Y 1 A TYR 55 ? CZ ? A TYR 45 CZ 8 1 Y 1 A TYR 55 ? OH ? A TYR 45 OH 9 1 Y 1 A ARG 73 ? CG ? A ARG 63 CG 10 1 Y 1 A ARG 73 ? CD ? A ARG 63 CD 11 1 Y 1 A ARG 73 ? NE ? A ARG 63 NE 12 1 Y 1 A ARG 73 ? CZ ? A ARG 63 CZ 13 1 Y 1 A ARG 73 ? NH1 ? A ARG 63 NH1 14 1 Y 1 A ARG 73 ? NH2 ? A ARG 63 NH2 15 1 Y 1 A GLN 74 ? CB ? A GLN 64 CB 16 1 Y 1 A GLN 74 ? CG ? A GLN 64 CG 17 1 Y 1 A GLN 74 ? CD ? A GLN 64 CD 18 1 Y 1 A GLN 74 ? OE1 ? A GLN 64 OE1 19 1 Y 1 A GLN 74 ? NE2 ? A GLN 64 NE2 20 1 Y 1 A LYS 127 ? CE ? A LYS 117 CE 21 1 Y 1 A LYS 127 ? NZ ? A LYS 117 NZ 22 1 Y 1 A LYS 134 ? CE ? A LYS 124 CE 23 1 Y 1 A LYS 134 ? NZ ? A LYS 124 NZ 24 1 Y 1 A ASP 135 ? CG ? A ASP 125 CG 25 1 Y 1 A ASP 135 ? OD1 ? A ASP 125 OD1 26 1 Y 1 A ASP 135 ? OD2 ? A ASP 125 OD2 27 1 Y 1 A ARG 140 ? CG ? A ARG 130 CG 28 1 Y 1 A ARG 140 ? CD ? A ARG 130 CD 29 1 Y 1 A ARG 140 ? NE ? A ARG 130 NE 30 1 Y 1 A ARG 140 ? CZ ? A ARG 130 CZ 31 1 Y 1 A ARG 140 ? NH1 ? A ARG 130 NH1 32 1 Y 1 A ARG 140 ? NH2 ? A ARG 130 NH2 33 1 Y 1 A LYS 160 ? CB ? A LYS 150 CB 34 1 Y 1 A LYS 160 ? CG ? A LYS 150 CG 35 1 Y 1 A LYS 160 ? CD ? A LYS 150 CD 36 1 Y 1 A LYS 160 ? CE ? A LYS 150 CE 37 1 Y 1 A LYS 160 ? NZ ? A LYS 150 NZ 38 1 Y 1 A ARG 161 ? CB ? A ARG 151 CB 39 1 Y 1 A ARG 161 ? CG ? A ARG 151 CG 40 1 Y 1 A ARG 161 ? CD ? A ARG 151 CD 41 1 Y 1 A ARG 161 ? NE ? A ARG 151 NE 42 1 Y 1 A ARG 161 ? CZ ? A ARG 151 CZ 43 1 Y 1 A ARG 161 ? NH1 ? A ARG 151 NH1 44 1 Y 1 A ARG 161 ? NH2 ? A ARG 151 NH2 45 1 Y 1 A LEU 184 ? CB ? A LEU 174 CB 46 1 Y 1 A LEU 184 ? CG ? A LEU 174 CG 47 1 Y 1 A LEU 184 ? CD1 ? A LEU 174 CD1 48 1 Y 1 A LEU 184 ? CD2 ? A LEU 174 CD2 49 1 Y 1 A LYS 214 ? CG ? A LYS 204 CG 50 1 Y 1 A LYS 214 ? CD ? A LYS 204 CD 51 1 Y 1 A LYS 214 ? CE ? A LYS 204 CE 52 1 Y 1 A LYS 214 ? NZ ? A LYS 204 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 11 ? A MET 1 2 1 Y 1 A GLN 12 ? A GLN 2 3 1 Y 1 A GLU 13 ? A GLU 3 4 1 Y 1 A PRO 14 ? A PRO 4 5 1 Y 1 A LEU 15 ? A LEU 5 6 1 Y 1 A LYS 215 ? A LYS 205 7 1 Y 1 A GLU 216 ? A GLU 206 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FE FE FE N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MD6 C C N N 231 MD6 N N N N 232 MD6 O O N N 233 MD6 CA C N N 234 MD6 N2 N Y N 235 MD6 OXT O N N 236 MD6 C3 C N N 237 MD6 O3 O N N 238 MD6 C4 C Y N 239 MD6 O4 O N N 240 MD6 C5 C Y N 241 MD6 C6 C Y N 242 MD6 C7 C Y N 243 MD6 C8 C Y N 244 MD6 H2 H N N 245 MD6 HA2 H N N 246 MD6 HA3 H N N 247 MD6 HXT H N N 248 MD6 HO4 H N N 249 MD6 H5 H N N 250 MD6 H6 H N N 251 MD6 H7 H N N 252 MET N N N N 253 MET CA C N S 254 MET C C N N 255 MET O O N N 256 MET CB C N N 257 MET CG C N N 258 MET SD S N N 259 MET CE C N N 260 MET OXT O N N 261 MET H H N N 262 MET H2 H N N 263 MET HA H N N 264 MET HB2 H N N 265 MET HB3 H N N 266 MET HG2 H N N 267 MET HG3 H N N 268 MET HE1 H N N 269 MET HE2 H N N 270 MET HE3 H N N 271 MET HXT H N N 272 PHE N N N N 273 PHE CA C N S 274 PHE C C N N 275 PHE O O N N 276 PHE CB C N N 277 PHE CG C Y N 278 PHE CD1 C Y N 279 PHE CD2 C Y N 280 PHE CE1 C Y N 281 PHE CE2 C Y N 282 PHE CZ C Y N 283 PHE OXT O N N 284 PHE H H N N 285 PHE H2 H N N 286 PHE HA H N N 287 PHE HB2 H N N 288 PHE HB3 H N N 289 PHE HD1 H N N 290 PHE HD2 H N N 291 PHE HE1 H N N 292 PHE HE2 H N N 293 PHE HZ H N N 294 PHE HXT H N N 295 PRO N N N N 296 PRO CA C N S 297 PRO C C N N 298 PRO O O N N 299 PRO CB C N N 300 PRO CG C N N 301 PRO CD C N N 302 PRO OXT O N N 303 PRO H H N N 304 PRO HA H N N 305 PRO HB2 H N N 306 PRO HB3 H N N 307 PRO HG2 H N N 308 PRO HG3 H N N 309 PRO HD2 H N N 310 PRO HD3 H N N 311 PRO HXT H N N 312 SER N N N N 313 SER CA C N S 314 SER C C N N 315 SER O O N N 316 SER CB C N N 317 SER OG O N N 318 SER OXT O N N 319 SER H H N N 320 SER H2 H N N 321 SER HA H N N 322 SER HB2 H N N 323 SER HB3 H N N 324 SER HG H N N 325 SER HXT H N N 326 THR N N N N 327 THR CA C N S 328 THR C C N N 329 THR O O N N 330 THR CB C N R 331 THR OG1 O N N 332 THR CG2 C N N 333 THR OXT O N N 334 THR H H N N 335 THR H2 H N N 336 THR HA H N N 337 THR HB H N N 338 THR HG1 H N N 339 THR HG21 H N N 340 THR HG22 H N N 341 THR HG23 H N N 342 THR HXT H N N 343 TRP N N N N 344 TRP CA C N S 345 TRP C C N N 346 TRP O O N N 347 TRP CB C N N 348 TRP CG C Y N 349 TRP CD1 C Y N 350 TRP CD2 C Y N 351 TRP NE1 N Y N 352 TRP CE2 C Y N 353 TRP CE3 C Y N 354 TRP CZ2 C Y N 355 TRP CZ3 C Y N 356 TRP CH2 C Y N 357 TRP OXT O N N 358 TRP H H N N 359 TRP H2 H N N 360 TRP HA H N N 361 TRP HB2 H N N 362 TRP HB3 H N N 363 TRP HD1 H N N 364 TRP HE1 H N N 365 TRP HE3 H N N 366 TRP HZ2 H N N 367 TRP HZ3 H N N 368 TRP HH2 H N N 369 TRP HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 VAL N N N N 395 VAL CA C N S 396 VAL C C N N 397 VAL O O N N 398 VAL CB C N N 399 VAL CG1 C N N 400 VAL CG2 C N N 401 VAL OXT O N N 402 VAL H H N N 403 VAL H2 H N N 404 VAL HA H N N 405 VAL HB H N N 406 VAL HG11 H N N 407 VAL HG12 H N N 408 VAL HG13 H N N 409 VAL HG21 H N N 410 VAL HG22 H N N 411 VAL HG23 H N N 412 VAL HXT H N N 413 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MD6 O C doub N N 218 MD6 OXT C sing N N 219 MD6 C CA sing N N 220 MD6 CA N sing N N 221 MD6 N C3 sing N N 222 MD6 N H2 sing N N 223 MD6 CA HA2 sing N N 224 MD6 CA HA3 sing N N 225 MD6 C4 N2 doub Y N 226 MD6 N2 C5 sing Y N 227 MD6 OXT HXT sing N N 228 MD6 C3 O3 doub N N 229 MD6 C3 C4 sing N N 230 MD6 C8 C4 sing Y N 231 MD6 O4 C8 sing N N 232 MD6 O4 HO4 sing N N 233 MD6 C6 C5 doub Y N 234 MD6 C5 H5 sing N N 235 MD6 C7 C6 sing Y N 236 MD6 C6 H6 sing N N 237 MD6 C8 C7 doub Y N 238 MD6 C7 H7 sing N N 239 MET N CA sing N N 240 MET N H sing N N 241 MET N H2 sing N N 242 MET CA C sing N N 243 MET CA CB sing N N 244 MET CA HA sing N N 245 MET C O doub N N 246 MET C OXT sing N N 247 MET CB CG sing N N 248 MET CB HB2 sing N N 249 MET CB HB3 sing N N 250 MET CG SD sing N N 251 MET CG HG2 sing N N 252 MET CG HG3 sing N N 253 MET SD CE sing N N 254 MET CE HE1 sing N N 255 MET CE HE2 sing N N 256 MET CE HE3 sing N N 257 MET OXT HXT sing N N 258 PHE N CA sing N N 259 PHE N H sing N N 260 PHE N H2 sing N N 261 PHE CA C sing N N 262 PHE CA CB sing N N 263 PHE CA HA sing N N 264 PHE C O doub N N 265 PHE C OXT sing N N 266 PHE CB CG sing N N 267 PHE CB HB2 sing N N 268 PHE CB HB3 sing N N 269 PHE CG CD1 doub Y N 270 PHE CG CD2 sing Y N 271 PHE CD1 CE1 sing Y N 272 PHE CD1 HD1 sing N N 273 PHE CD2 CE2 doub Y N 274 PHE CD2 HD2 sing N N 275 PHE CE1 CZ doub Y N 276 PHE CE1 HE1 sing N N 277 PHE CE2 CZ sing Y N 278 PHE CE2 HE2 sing N N 279 PHE CZ HZ sing N N 280 PHE OXT HXT sing N N 281 PRO N CA sing N N 282 PRO N CD sing N N 283 PRO N H sing N N 284 PRO CA C sing N N 285 PRO CA CB sing N N 286 PRO CA HA sing N N 287 PRO C O doub N N 288 PRO C OXT sing N N 289 PRO CB CG sing N N 290 PRO CB HB2 sing N N 291 PRO CB HB3 sing N N 292 PRO CG CD sing N N 293 PRO CG HG2 sing N N 294 PRO CG HG3 sing N N 295 PRO CD HD2 sing N N 296 PRO CD HD3 sing N N 297 PRO OXT HXT sing N N 298 SER N CA sing N N 299 SER N H sing N N 300 SER N H2 sing N N 301 SER CA C sing N N 302 SER CA CB sing N N 303 SER CA HA sing N N 304 SER C O doub N N 305 SER C OXT sing N N 306 SER CB OG sing N N 307 SER CB HB2 sing N N 308 SER CB HB3 sing N N 309 SER OG HG sing N N 310 SER OXT HXT sing N N 311 THR N CA sing N N 312 THR N H sing N N 313 THR N H2 sing N N 314 THR CA C sing N N 315 THR CA CB sing N N 316 THR CA HA sing N N 317 THR C O doub N N 318 THR C OXT sing N N 319 THR CB OG1 sing N N 320 THR CB CG2 sing N N 321 THR CB HB sing N N 322 THR OG1 HG1 sing N N 323 THR CG2 HG21 sing N N 324 THR CG2 HG22 sing N N 325 THR CG2 HG23 sing N N 326 THR OXT HXT sing N N 327 TRP N CA sing N N 328 TRP N H sing N N 329 TRP N H2 sing N N 330 TRP CA C sing N N 331 TRP CA CB sing N N 332 TRP CA HA sing N N 333 TRP C O doub N N 334 TRP C OXT sing N N 335 TRP CB CG sing N N 336 TRP CB HB2 sing N N 337 TRP CB HB3 sing N N 338 TRP CG CD1 doub Y N 339 TRP CG CD2 sing Y N 340 TRP CD1 NE1 sing Y N 341 TRP CD1 HD1 sing N N 342 TRP CD2 CE2 doub Y N 343 TRP CD2 CE3 sing Y N 344 TRP NE1 CE2 sing Y N 345 TRP NE1 HE1 sing N N 346 TRP CE2 CZ2 sing Y N 347 TRP CE3 CZ3 doub Y N 348 TRP CE3 HE3 sing N N 349 TRP CZ2 CH2 doub Y N 350 TRP CZ2 HZ2 sing N N 351 TRP CZ3 CH2 sing Y N 352 TRP CZ3 HZ3 sing N N 353 TRP CH2 HH2 sing N N 354 TRP OXT HXT sing N N 355 TYR N CA sing N N 356 TYR N H sing N N 357 TYR N H2 sing N N 358 TYR CA C sing N N 359 TYR CA CB sing N N 360 TYR CA HA sing N N 361 TYR C O doub N N 362 TYR C OXT sing N N 363 TYR CB CG sing N N 364 TYR CB HB2 sing N N 365 TYR CB HB3 sing N N 366 TYR CG CD1 doub Y N 367 TYR CG CD2 sing Y N 368 TYR CD1 CE1 sing Y N 369 TYR CD1 HD1 sing N N 370 TYR CD2 CE2 doub Y N 371 TYR CD2 HD2 sing N N 372 TYR CE1 CZ doub Y N 373 TYR CE1 HE1 sing N N 374 TYR CE2 CZ sing Y N 375 TYR CE2 HE2 sing N N 376 TYR CZ OH sing N N 377 TYR OH HH sing N N 378 TYR OXT HXT sing N N 379 VAL N CA sing N N 380 VAL N H sing N N 381 VAL N H2 sing N N 382 VAL CA C sing N N 383 VAL CA CB sing N N 384 VAL CA HA sing N N 385 VAL C O doub N N 386 VAL C OXT sing N N 387 VAL CB CG1 sing N N 388 VAL CB CG2 sing N N 389 VAL CB HB sing N N 390 VAL CG1 HG11 sing N N 391 VAL CG1 HG12 sing N N 392 VAL CG1 HG13 sing N N 393 VAL CG2 HG21 sing N N 394 VAL CG2 HG22 sing N N 395 VAL CG2 HG23 sing N N 396 VAL OXT HXT sing N N 397 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 'N-[(3-hydroxypyridin-2-yl)carbonyl]glycine' MD6 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3T4H _pdbx_initial_refinement_model.details ? #