data_3T4B # _entry.id 3T4B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3T4B pdb_00003t4b 10.2210/pdb3t4b/pdb NDB NA1240 ? ? RCSB RCSB067019 ? ? WWPDB D_1000067019 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-12 2 'Structure model' 1 1 2011-10-26 3 'Structure model' 1 2 2011-11-23 4 'Structure model' 1 3 2017-06-28 5 'Structure model' 1 4 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Source and taxonomy' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity 2 4 'Structure model' pdbx_entity_src_syn 3 4 'Structure model' struct 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref 6 4 'Structure model' struct_ref_seq 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_struct_conn_angle 11 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 12 5 'Structure model' struct_conn 13 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity.pdbx_fragment' 2 4 'Structure model' '_struct.pdbx_descriptor' 3 4 'Structure model' '_struct_ref.db_code' 4 4 'Structure model' '_struct_ref.db_name' 5 4 'Structure model' '_struct_ref.pdbx_align_begin' 6 4 'Structure model' '_struct_ref.pdbx_db_accession' 7 4 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 8 4 'Structure model' '_struct_ref_seq.db_align_beg' 9 4 'Structure model' '_struct_ref_seq.db_align_end' 10 4 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 11 4 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 12 4 'Structure model' '_struct_ref_seq.pdbx_db_accession' 13 4 'Structure model' '_struct_ref_seq.seq_align_beg' 14 4 'Structure model' '_struct_ref_seq.seq_align_end' 15 5 'Structure model' '_database_2.pdbx_DOI' 16 5 'Structure model' '_database_2.pdbx_database_accession' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3T4B _pdbx_database_status.recvd_initial_deposition_date 2011-07-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Berry, K.E.' 1 'Waghray, S.' 2 'Mortimer, S.A.' 3 'Bai, Y.' 4 'Doudna, J.A.' 5 # _citation.id primary _citation.title 'Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning.' _citation.journal_abbrev Structure _citation.journal_volume 19 _citation.page_first 1456 _citation.page_last 1466 _citation.year 2011 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22000514 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.08.002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Berry, K.E.' 1 ? primary 'Waghray, S.' 2 ? primary 'Mortimer, S.A.' 3 ? primary 'Bai, Y.' 4 ? primary 'Doudna, J.A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HCV IRES pseudoknot domain plus crystallization module' 27269.125 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;CCUCCCGGGAGAGCCGCUAAGGGGGAAACUCUAUGCGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCG UAG(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;CCUCCCGGGAGAGCCGCUAAGGGGGAAACUCUAUGCGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCG UAGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'NICKEL (II) ION' _pdbx_entity_nonpoly.comp_id NI # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 U n 1 4 C n 1 5 C n 1 6 C n 1 7 G n 1 8 G n 1 9 G n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 C n 1 15 C n 1 16 G n 1 17 C n 1 18 U n 1 19 A n 1 20 A n 1 21 G n 1 22 G n 1 23 G n 1 24 G n 1 25 G n 1 26 A n 1 27 A n 1 28 A n 1 29 C n 1 30 U n 1 31 C n 1 32 U n 1 33 A n 1 34 U n 1 35 G n 1 36 C n 1 37 G n 1 38 G n 1 39 U n 1 40 A n 1 41 C n 1 42 U n 1 43 G n 1 44 C n 1 45 C n 1 46 U n 1 47 G n 1 48 A n 1 49 U n 1 50 A n 1 51 G n 1 52 G n 1 53 G n 1 54 U n 1 55 G n 1 56 C n 1 57 U n 1 58 U n 1 59 G n 1 60 C n 1 61 G n 1 62 A n 1 63 G n 1 64 U n 1 65 G n 1 66 C n 1 67 C n 1 68 C n 1 69 C n 1 70 G n 1 71 G n 1 72 G n 1 73 A n 1 74 G n 1 75 G n 1 76 U n 1 77 C n 1 78 U n 1 79 C n 1 80 G n 1 81 U n 1 82 A n 1 83 G n 1 84 A23 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 'This portion of RNA sequence was inserted to facilitate crystallization' 1 2 sample ? ? 'Hepatitis C virus ED43' ? 356418 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 125 125 C C A . n A 1 2 C 2 126 126 C C A . n A 1 3 U 3 127 127 U U A . n A 1 4 C 4 128 128 C C A . n A 1 5 C 5 129 129 C C A . n A 1 6 C 6 130 130 C C A . n A 1 7 G 7 131 131 G G A . n A 1 8 G 8 132 132 G G A . n A 1 9 G 9 133 133 G G A . n A 1 10 A 10 134 134 A A A . n A 1 11 G 11 135 135 G G A . n A 1 12 A 12 136 136 A A A . n A 1 13 G 13 137 137 G G A . n A 1 14 C 14 138 138 C C A . n A 1 15 C 15 139 139 C C A . n A 1 16 G 16 1 1 G G A . n A 1 17 C 17 2 2 C C A . n A 1 18 U 18 3 3 U U A . n A 1 19 A 19 4 4 A A A . n A 1 20 A 20 5 5 A A A . n A 1 21 G 21 6 6 G G A . n A 1 22 G 22 7 7 G G A . n A 1 23 G 23 8 8 G G A . n A 1 24 G 24 9 9 G G A . n A 1 25 G 25 10 10 G G A . n A 1 26 A 26 11 11 A A A . n A 1 27 A 27 12 12 A A A . n A 1 28 A 28 13 13 A A A . n A 1 29 C 29 14 14 C C A . n A 1 30 U 30 15 15 U U A . n A 1 31 C 31 16 16 C C A . n A 1 32 U 32 17 17 U U A . n A 1 33 A 33 18 18 A A A . n A 1 34 U 34 19 19 U U A . n A 1 35 G 35 20 20 G G A . n A 1 36 C 36 21 21 C C A . n A 1 37 G 37 285 285 G G A . n A 1 38 G 38 286 286 G G A . n A 1 39 U 39 287 287 U U A . n A 1 40 A 40 288 288 A A A . n A 1 41 C 41 289 289 C C A . n A 1 42 U 42 290 290 U U A . n A 1 43 G 43 291 291 G G A . n A 1 44 C 44 292 292 C C A . n A 1 45 C 45 293 293 C C A . n A 1 46 U 46 294 294 U U A . n A 1 47 G 47 295 295 G G A . n A 1 48 A 48 296 296 A A A . n A 1 49 U 49 297 297 U U A . n A 1 50 A 50 298 298 A A A . n A 1 51 G 51 299 299 G G A . n A 1 52 G 52 300 300 G G A . n A 1 53 G 53 301 301 G G A . n A 1 54 U 54 302 302 U U A . n A 1 55 G 55 303 303 G G A . n A 1 56 C 56 304 304 C C A . n A 1 57 U 57 305 305 U U A . n A 1 58 U 58 306 306 U U A . n A 1 59 G 59 307 307 G G A . n A 1 60 C 60 308 308 C C A . n A 1 61 G 61 309 309 G G A . n A 1 62 A 62 310 310 A A A . n A 1 63 G 63 311 311 G G A . n A 1 64 U 64 312 312 U U A . n A 1 65 G 65 313 313 G G A . n A 1 66 C 66 314 314 C C A . n A 1 67 C 67 315 315 C C A . n A 1 68 C 68 316 316 C C A . n A 1 69 C 69 317 317 C C A . n A 1 70 G 70 318 318 G G A . n A 1 71 G 71 319 319 G G A . n A 1 72 G 72 320 320 G G A . n A 1 73 A 73 321 321 A A A . n A 1 74 G 74 322 322 G G A . n A 1 75 G 75 323 323 G G A . n A 1 76 U 76 324 324 U U A . n A 1 77 C 77 325 325 C C A . n A 1 78 U 78 326 326 U U A . n A 1 79 C 79 327 327 C C A . n A 1 80 G 80 328 328 G G A . n A 1 81 U 81 329 329 U U A . n A 1 82 A 82 330 330 A A A . n A 1 83 G 83 331 331 G G A . n A 1 84 A23 84 332 332 A23 A23 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI 1 1001 1001 NI NI A . C 2 NI 1 1002 1002 NI NI A . D 2 NI 1 1003 1003 NI NI A . E 2 NI 1 1004 1004 NI NI A . F 2 NI 1 1005 1005 NI NI A . G 2 NI 1 1006 1006 NI NI A . H 2 NI 1 1007 1007 NI NI A . I 2 NI 1 1008 1008 NI NI A . J 2 NI 1 1009 1009 NI NI A . K 2 NI 1 1010 1010 NI NI A . L 2 NI 1 1011 1011 NI NI A . M 2 NI 1 1012 1012 NI NI A . N 2 NI 1 1013 1013 NI NI A . O 2 NI 1 1014 1014 NI NI A . P 2 NI 1 1015 1015 NI NI A . Q 2 NI 1 1016 1016 NI NI A . R 2 NI 1 1017 1017 NI NI A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 324 ? C2 ? A U 76 C2 2 1 Y 1 A U 324 ? O2 ? A U 76 O2 3 1 Y 1 A U 324 ? N3 ? A U 76 N3 4 1 Y 1 A U 324 ? C4 ? A U 76 C4 5 1 Y 1 A U 324 ? O4 ? A U 76 O4 6 1 Y 1 A U 324 ? C5 ? A U 76 C5 7 1 Y 1 A U 324 ? C6 ? A U 76 C6 8 1 Y 0 A U 324 ? N1 ? A U 76 N1 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7_650)' ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _cell.entry_id 3T4B _cell.length_a 113.390 _cell.length_b 113.390 _cell.length_c 88.220 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3T4B _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3T4B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.20 _exptl_crystal.density_percent_sol 76.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;RNA was mixed in a 1:1 ratio with well solution (0.5-0.6 M Li2SO4, 30-37 mM MgCl2, 1-2 mM spermine, 50 mM MES, pH 6.5) with an additional 10 mM NiCl2 added to the drop before equilibration, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-03-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'KHOZU Double flat crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.1159 1.0 2 1.4855 1.0 3 1.4370 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.1159, 1.4855, 1.4370' # _reflns.entry_id 3T4B _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 3.55 _reflns.number_obs 7348 _reflns.number_all 7384 _reflns.percent_possible_obs 99.5 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.55 _reflns_shell.d_res_low 3.64 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.757 _reflns_shell.meanI_over_sigI_obs 3.02 _reflns_shell.pdbx_redundancy 8.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 515 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3T4B _refine.ls_number_reflns_obs 7317 _refine.ls_number_reflns_all 7319 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.089 _refine.ls_d_res_high 3.55 _refine.ls_percent_reflns_obs 99.65 _refine.ls_R_factor_obs 0.2227 _refine.ls_R_factor_R_work 0.2211 _refine.ls_R_factor_R_free 0.2542 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 366 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -11.0892 _refine.aniso_B[2][2] -11.0892 _refine.aniso_B[3][3] 22.1785 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.258 _refine.solvent_model_param_bsol 47.231 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 1.13 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 28.65 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1796 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1813 _refine_hist.d_res_high 3.55 _refine_hist.d_res_low 40.089 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 2026 ? 'X-RAY DIFFRACTION' f_angle_d 0.769 ? ? 3166 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 19.423 ? ? 1003 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.054 ? ? 419 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 99 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 3.550 4.0639 2257 0.3496 100.00 0.3459 . . 119 . . 2258 . 'X-RAY DIFFRACTION' . 4.0639 5.1184 2281 0.2687 100.00 0.2866 . . 118 . . 2281 . 'X-RAY DIFFRACTION' . 5.1184 40.0920 2413 0.1785 100.00 0.2239 . . 129 . . 2414 . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3T4B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3T4B _struct.title 'Crystal Structure of the HCV IRES pseudoknot domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T4B _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Pseudoknot, four-way junction, HCV IRES central domain, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 3T4B 3T4B ? 1 ? 1 2 GB Y11604.1 2252489 ? 1 UGCGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGA 220 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3T4B A 1 ? 33 ? 3T4B 125 ? 18 ? 125 18 2 2 3T4B A 34 ? 84 ? 2252489 220 ? 270 ? 19 332 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'AS PER THE AUTHORS THERE IS ABSOLUTELY NO EVIDENCE TO SUGGEST THAT THE HCV IRES FUNCTIONS AS A DIMER' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 83 "O3'" ? ? ? 1_555 A A23 84 P ? ? A G 331 A A23 332 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A G 16 N7 ? ? ? 1_555 L NI . NI ? ? A G 1 A NI 1011 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc2 metalc ? ? A G 22 N7 ? ? ? 1_555 C NI . NI ? ? A G 7 A NI 1002 1_555 ? ? ? ? ? ? ? 1.931 ? ? metalc3 metalc ? ? A G 25 N7 ? ? ? 1_555 B NI . NI ? ? A G 10 A NI 1001 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc4 metalc ? ? A G 8 N7 ? ? ? 1_555 K NI . NI ? ? A G 132 A NI 1010 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc5 metalc ? ? A G 9 N7 ? ? ? 1_555 O NI . NI ? ? A G 133 A NI 1014 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc6 metalc ? ? A G 11 N7 ? ? ? 1_555 E NI . NI ? ? A G 135 A NI 1004 1_555 ? ? ? ? ? ? ? 1.955 ? ? metalc7 metalc ? ? A G 37 N7 ? ? ? 1_555 D NI . NI ? ? A G 285 A NI 1003 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc8 metalc ? ? A G 43 N7 ? ? ? 1_555 N NI . NI ? ? A G 291 A NI 1013 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc9 metalc ? ? A G 47 N7 ? ? ? 1_555 R NI . NI ? ? A G 295 A NI 1017 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc10 metalc ? ? A A 50 OP2 ? ? ? 1_555 Q NI . NI ? ? A A 298 A NI 1016 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc11 metalc ? ? A G 52 N7 ? ? ? 1_555 F NI . NI ? ? A G 300 A NI 1005 1_555 ? ? ? ? ? ? ? 1.962 ? ? metalc12 metalc ? ? A U 58 N1 ? ? ? 1_555 G NI . NI ? ? A U 306 A NI 1006 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc13 metalc ? ? A G 59 N7 ? ? ? 1_555 G NI . NI ? ? A G 307 A NI 1006 1_555 ? ? ? ? ? ? ? 1.751 ? ? metalc14 metalc ? ? A A 62 N7 ? ? ? 1_555 P NI . NI ? ? A A 310 A NI 1015 1_555 ? ? ? ? ? ? ? 1.997 ? ? metalc15 metalc ? ? A G 71 N7 ? ? ? 1_555 I NI . NI ? ? A G 319 A NI 1008 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc16 metalc ? ? A G 72 N7 ? ? ? 1_555 J NI . NI ? ? A G 320 A NI 1009 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc17 metalc ? ? A G 74 N7 ? ? ? 1_555 H NI . NI ? ? A G 322 A NI 1007 1_555 ? ? ? ? ? ? ? 1.873 ? ? metalc18 metalc ? ? A G 83 N7 ? ? ? 1_555 M NI . NI ? ? A G 331 A NI 1012 1_555 ? ? ? ? ? ? ? 1.894 ? ? hydrog1 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 1 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 2 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 2 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 2 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 33 N7 ? ? A U 3 A A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog8 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 33 N6 ? ? A U 3 A A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog9 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 5 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 5 A U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 21 N1 ? ? ? 1_555 A U 32 O2 ? ? A G 6 A U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A G 21 O6 ? ? ? 1_555 A U 32 N3 ? ? A G 6 A U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A G 21 N2 ? ? ? 1_555 A U 34 O4 ? ? A G 6 A U 19 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 7 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 7 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 7 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 23 N1 ? ? ? 1_555 A U 30 O2 ? ? A G 8 A U 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 23 O6 ? ? ? 1_555 A U 30 N3 ? ? A G 8 A U 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 9 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 9 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 9 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 75 N1 ? ? A C 125 A G 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 75 O6 ? ? A C 125 A G 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 75 N2 ? ? A C 125 A G 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 126 A G 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 126 A G 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 126 A G 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 73 N1 ? ? A U 127 A A 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 73 N6 ? ? A U 127 A A 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 72 N1 ? ? A C 128 A G 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 72 O6 ? ? A C 128 A G 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 72 N2 ? ? A C 128 A G 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 129 A G 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 129 A G 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 129 A G 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 130 A G 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 130 A G 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 130 A G 318 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 131 A C 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 131 A C 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 131 A C 317 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 132 A C 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 132 A C 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 132 A C 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 133 A C 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 133 A C 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 133 A C 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 134 A U 290 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 134 A U 290 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 135 A C 289 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 135 A C 289 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 135 A C 289 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 13 N1 ? ? ? 1_555 A U 39 O2 ? ? A G 137 A U 287 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog54 hydrog ? ? A G 13 O6 ? ? ? 1_555 A U 39 N3 ? ? A G 137 A U 287 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog55 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 138 A G 286 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 138 A G 286 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 138 A G 286 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 139 A G 285 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 139 A G 285 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 139 A G 285 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 40 N1 ? ? ? 1_555 A U 49 N3 ? ? A A 288 A U 297 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 40 N6 ? ? ? 1_555 A U 49 O4 ? ? A A 288 A U 297 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 54 O2 ? ? A G 291 A U 302 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 54 N3 ? ? A G 291 A U 302 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 53 N1 ? ? A C 292 A G 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 53 O6 ? ? A C 292 A G 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 53 N2 ? ? A C 292 A G 301 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 293 A G 300 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 293 A G 300 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 293 A G 300 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 46 N3 ? ? ? 1_555 A G 51 O6 ? ? A U 294 A G 299 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? A U 46 O2 ? ? ? 1_555 A G 51 N1 ? ? A U 294 A G 299 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A G 47 N2 ? ? ? 1_555 A A 50 N1 ? ? A G 295 A A 298 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog74 hydrog ? ? A G 47 N3 ? ? ? 1_555 A A 50 N6 ? ? A G 295 A A 298 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog75 hydrog ? ? A G 55 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 303 A C 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 55 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 303 A C 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 55 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 303 A C 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 304 A G 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 304 A G 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 304 A G 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 57 N3 ? ? ? 1_555 A U 64 O4 ? ? A U 305 A U 312 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog82 hydrog ? ? A G 59 N1 ? ? ? 1_555 A U 81 O2 ? ? A G 307 A U 329 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? A G 59 O6 ? ? ? 1_555 A U 81 N3 ? ? A G 307 A U 329 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog84 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 308 A G 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 308 A G 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 308 A G 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 61 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 309 A C 327 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 61 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 309 A C 327 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 61 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 309 A C 327 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A A 62 N1 ? ? ? 1_555 A U 78 N3 ? ? A A 310 A U 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 62 N6 ? ? ? 1_555 A U 78 O4 ? ? A A 310 A U 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 311 A C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 77 O2 ? ? A G 311 A C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 77 N4 ? ? A G 311 A C 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id N1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 58 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 306 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NI _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id G _pdbx_struct_conn_angle.ptnr2_label_comp_id NI _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NI _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1006 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id N7 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id G _pdbx_struct_conn_angle.ptnr3_label_seq_id 59 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id G _pdbx_struct_conn_angle.ptnr3_auth_seq_id 307 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 144.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 1001 ? 2 'BINDING SITE FOR RESIDUE NI A 1001' AC2 Software A NI 1002 ? 2 'BINDING SITE FOR RESIDUE NI A 1002' AC3 Software A NI 1003 ? 1 'BINDING SITE FOR RESIDUE NI A 1003' AC4 Software A NI 1004 ? 1 'BINDING SITE FOR RESIDUE NI A 1004' AC5 Software A NI 1005 ? 1 'BINDING SITE FOR RESIDUE NI A 1005' AC6 Software A NI 1006 ? 3 'BINDING SITE FOR RESIDUE NI A 1006' AC7 Software A NI 1007 ? 1 'BINDING SITE FOR RESIDUE NI A 1007' AC8 Software A NI 1008 ? 2 'BINDING SITE FOR RESIDUE NI A 1008' AC9 Software A NI 1009 ? 1 'BINDING SITE FOR RESIDUE NI A 1009' BC1 Software A NI 1010 ? 2 'BINDING SITE FOR RESIDUE NI A 1010' BC2 Software A NI 1011 ? 2 'BINDING SITE FOR RESIDUE NI A 1011' BC3 Software A NI 1012 ? 3 'BINDING SITE FOR RESIDUE NI A 1012' BC4 Software A NI 1013 ? 1 'BINDING SITE FOR RESIDUE NI A 1013' BC5 Software A NI 1014 ? 3 'BINDING SITE FOR RESIDUE NI A 1014' BC6 Software A NI 1015 ? 1 'BINDING SITE FOR RESIDUE NI A 1015' BC7 Software A NI 1016 ? 1 'BINDING SITE FOR RESIDUE NI A 1016' BC8 Software A NI 1017 ? 1 'BINDING SITE FOR RESIDUE NI A 1017' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 24 ? G A 9 . ? 1_555 ? 2 AC1 2 G A 25 ? G A 10 . ? 1_555 ? 3 AC2 2 G A 21 ? G A 6 . ? 1_555 ? 4 AC2 2 G A 22 ? G A 7 . ? 1_555 ? 5 AC3 1 G A 37 ? G A 285 . ? 1_555 ? 6 AC4 1 G A 11 ? G A 135 . ? 1_555 ? 7 AC5 1 G A 52 ? G A 300 . ? 1_555 ? 8 AC6 3 U A 58 ? U A 306 . ? 1_555 ? 9 AC6 3 G A 59 ? G A 307 . ? 1_555 ? 10 AC6 3 C A 60 ? C A 308 . ? 1_555 ? 11 AC7 1 G A 74 ? G A 322 . ? 1_555 ? 12 AC8 2 G A 70 ? G A 318 . ? 1_555 ? 13 AC8 2 G A 71 ? G A 319 . ? 1_555 ? 14 AC9 1 G A 72 ? G A 320 . ? 1_555 ? 15 BC1 2 G A 8 ? G A 132 . ? 1_555 ? 16 BC1 2 NI O . ? NI A 1014 . ? 1_555 ? 17 BC2 2 G A 16 ? G A 1 . ? 1_555 ? 18 BC2 2 C A 15 ? C A 139 . ? 1_555 ? 19 BC3 3 G A 59 ? G A 307 . ? 8_447 ? 20 BC3 3 A A 82 ? A A 330 . ? 1_555 ? 21 BC3 3 G A 83 ? G A 331 . ? 1_555 ? 22 BC4 1 G A 43 ? G A 291 . ? 1_555 ? 23 BC5 3 G A 8 ? G A 132 . ? 1_555 ? 24 BC5 3 G A 9 ? G A 133 . ? 1_555 ? 25 BC5 3 NI K . ? NI A 1010 . ? 1_555 ? 26 BC6 1 A A 62 ? A A 310 . ? 1_555 ? 27 BC7 1 A A 50 ? A A 298 . ? 1_555 ? 28 BC8 1 G A 47 ? G A 295 . ? 1_555 ? # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 84 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 332 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details 'modified residue' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -28.6437 -71.5451 101.3591 2.1774 2.5250 1.9369 0.5600 0.2573 0.2824 1.4364 0.4064 1.8301 -0.5077 0.7334 0.7150 -0.1158 -1.4708 0.6490 0.5862 0.8663 0.1850 0.3435 0.8936 -0.0045 'X-RAY DIFFRACTION' 2 ? refined -22.7683 -62.3953 81.5445 1.2164 1.7338 1.3549 0.1544 0.1822 0.2648 1.3968 1.1984 0.2903 -0.7281 -0.6681 0.4755 0.2296 0.1042 -0.8442 -0.0943 0.3573 0.8529 0.2115 -0.8355 0.0006 'X-RAY DIFFRACTION' 3 ? refined -12.5683 -59.4646 59.5791 1.3806 1.3921 1.1346 -0.2168 -0.0230 0.0753 0.9405 1.4335 1.5398 -1.0185 0.8897 -1.5792 0.6845 0.6690 -0.1755 -0.3155 0.6590 1.0598 1.2569 -0.9308 0.0037 'X-RAY DIFFRACTION' 4 ? refined -41.5074 -63.3599 78.5335 1.1737 1.6300 2.3606 0.1760 0.0496 0.5028 0.4999 0.3193 1.2031 0.1540 0.7510 0.3622 -0.2907 -0.5236 -1.0840 -0.3722 0.7696 0.4446 0.1700 -0.3686 -0.0020 'X-RAY DIFFRACTION' 5 ? refined -42.6219 -62.4579 95.3513 0.3960 1.7457 2.1074 0.4035 0.4381 0.9666 1.5919 6.7443 3.5048 1.7739 1.4073 4.8632 0.9594 1.0518 0.5768 0.7224 0.6657 -0.0381 0.3441 -0.8285 0.7386 'X-RAY DIFFRACTION' 6 ? refined -49.7469 -53.6530 106.0719 1.5243 1.5087 2.7194 0.2002 0.4917 0.2897 0.9604 1.0452 2.2241 -0.5377 1.4908 -0.7889 0.1484 1.0532 0.1397 0.0877 -0.3697 -0.1104 1.0106 0.4774 0.0542 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 125 A 133 '( CHAIN A AND ( RESID 125:133 OR RESID 315:324 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 315 A 324 '( CHAIN A AND ( RESID 125:133 OR RESID 315:324 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 134 A 139 '( CHAIN A AND ( RESID 134:139 OR RESID 285:290 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 2 A 285 A 290 '( CHAIN A AND ( RESID 134:139 OR RESID 285:290 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 3 A 1 A 21 '( CHAIN A AND RESID 1:21 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 4 A 291 A 302 '( CHAIN A AND RESID 291:302 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 5 A 303 A 305 '( CHAIN A AND ( RESID 303:305 OR RESID 312:314 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 5 A 312 A 314 '( CHAIN A AND ( RESID 303:305 OR RESID 312:314 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 6 A 306 A 311 '( CHAIN A AND ( RESID 306:311 OR RESID 325:331 OR RESID 332:332 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 6 A 325 A 331 '( CHAIN A AND ( RESID 306:311 OR RESID 325:331 OR RESID 332:332 ) )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 6 A 332 A 332 '( CHAIN A AND ( RESID 306:311 OR RESID 325:331 OR RESID 332:332 ) )' ? ? ? ? ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 NI NI NI N N 150 U OP3 O N N 151 U P P N N 152 U OP1 O N N 153 U OP2 O N N 154 U "O5'" O N N 155 U "C5'" C N N 156 U "C4'" C N R 157 U "O4'" O N N 158 U "C3'" C N S 159 U "O3'" O N N 160 U "C2'" C N R 161 U "O2'" O N N 162 U "C1'" C N R 163 U N1 N N N 164 U C2 C N N 165 U O2 O N N 166 U N3 N N N 167 U C4 C N N 168 U O4 O N N 169 U C5 C N N 170 U C6 C N N 171 U HOP3 H N N 172 U HOP2 H N N 173 U "H5'" H N N 174 U "H5''" H N N 175 U "H4'" H N N 176 U "H3'" H N N 177 U "HO3'" H N N 178 U "H2'" H N N 179 U "HO2'" H N N 180 U "H1'" H N N 181 U H3 H N N 182 U H5 H N N 183 U H6 H N N 184 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 U OP3 P sing N N 158 U OP3 HOP3 sing N N 159 U P OP1 doub N N 160 U P OP2 sing N N 161 U P "O5'" sing N N 162 U OP2 HOP2 sing N N 163 U "O5'" "C5'" sing N N 164 U "C5'" "C4'" sing N N 165 U "C5'" "H5'" sing N N 166 U "C5'" "H5''" sing N N 167 U "C4'" "O4'" sing N N 168 U "C4'" "C3'" sing N N 169 U "C4'" "H4'" sing N N 170 U "O4'" "C1'" sing N N 171 U "C3'" "O3'" sing N N 172 U "C3'" "C2'" sing N N 173 U "C3'" "H3'" sing N N 174 U "O3'" "HO3'" sing N N 175 U "C2'" "O2'" sing N N 176 U "C2'" "C1'" sing N N 177 U "C2'" "H2'" sing N N 178 U "O2'" "HO2'" sing N N 179 U "C1'" N1 sing N N 180 U "C1'" "H1'" sing N N 181 U N1 C2 sing N N 182 U N1 C6 sing N N 183 U C2 O2 doub N N 184 U C2 N3 sing N N 185 U N3 C4 sing N N 186 U N3 H3 sing N N 187 U C4 O4 doub N N 188 U C4 C5 sing N N 189 U C5 C6 doub N N 190 U C5 H5 sing N N 191 U C6 H6 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3T4B 'double helix' 3T4B 'a-form double helix' 3T4B 'hairpin loop' 3T4B 'bulge loop' 3T4B 'mismatched base pair' 3T4B 'internal loop' 3T4B 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 75 1_555 -0.236 -0.042 -0.061 8.800 2.088 1.739 1 A_C125:G323_A A 125 ? A 323 ? 19 1 1 A C 2 1_555 A G 74 1_555 -0.620 -0.139 0.022 17.334 -17.737 2.381 2 A_C126:G322_A A 126 ? A 322 ? 19 1 1 A U 3 1_555 A A 73 1_555 -1.415 -0.333 -0.254 22.042 1.505 -0.384 3 A_U127:A321_A A 127 ? A 321 ? 20 1 1 A C 4 1_555 A G 72 1_555 -0.404 -0.065 -0.086 5.773 -3.153 1.859 4 A_C128:G320_A A 128 ? A 320 ? 19 1 1 A C 5 1_555 A G 71 1_555 -0.413 -0.156 0.286 14.153 -4.961 6.338 5 A_C129:G319_A A 129 ? A 319 ? 19 1 1 A C 6 1_555 A G 70 1_555 -0.527 -0.143 -0.825 13.162 -3.561 0.393 6 A_C130:G318_A A 130 ? A 318 ? 19 1 1 A G 7 1_555 A C 69 1_555 0.614 -0.128 -0.540 -11.025 -8.717 2.346 7 A_G131:C317_A A 131 ? A 317 ? 19 1 1 A G 8 1_555 A C 68 1_555 0.537 -0.082 -0.072 -5.806 -16.518 -0.313 8 A_G132:C316_A A 132 ? A 316 ? 19 1 1 A G 9 1_555 A C 67 1_555 -0.307 -0.213 0.222 -15.745 -6.631 -3.829 9 A_G133:C315_A A 133 ? A 315 ? 19 1 1 A A 10 1_555 A U 42 1_555 0.836 -0.021 -0.075 -6.681 -15.517 -13.136 10 A_A134:U290_A A 134 ? A 290 ? 20 1 1 A G 11 1_555 A C 41 1_555 0.530 -0.169 -0.092 4.726 -21.039 2.035 11 A_G135:C289_A A 135 ? A 289 ? 19 1 1 A U 49 1_555 A A 40 1_555 0.062 0.093 0.388 -17.920 -9.066 5.972 12 A_U297:A288_A A 297 ? A 288 ? 20 1 1 A G 13 1_555 A U 39 1_555 -1.948 -0.262 -0.433 -9.527 -13.719 4.056 13 A_G137:U287_A A 137 ? A 287 ? 28 1 1 A C 14 1_555 A G 38 1_555 -0.185 -0.064 -0.437 11.729 -20.607 1.242 14 A_C138:G286_A A 138 ? A 286 ? 19 1 1 A C 15 1_555 A G 37 1_555 -0.327 -0.109 0.209 9.874 -16.376 0.421 15 A_C139:G285_A A 139 ? A 285 ? 19 1 1 A G 16 1_555 A C 36 1_555 -0.682 -0.372 -0.028 6.279 -11.196 -4.470 16 A_G1:C21_A A 1 ? A 21 ? 19 1 1 A C 17 1_555 A G 35 1_555 0.338 -0.116 -0.348 14.462 -11.702 0.514 17 A_C2:G20_A A 2 ? A 20 ? 19 1 1 A A 33 1_555 A U 18 1_555 -4.431 -2.539 -0.971 20.446 -18.087 -85.083 18 A_A18:U3_A A 18 ? A 3 ? 24 4 1 A A 20 1_555 A U 34 1_555 1.158 0.494 -1.230 -37.287 17.925 -17.962 19 A_A5:U19_A A 5 ? A 19 ? 20 1 1 A G 21 1_555 A U 32 1_555 -1.659 -0.481 0.173 -4.312 -15.196 -4.353 20 A_G6:U17_A A 6 ? A 17 ? 28 1 1 A G 22 1_555 A C 31 1_555 0.695 -0.237 0.185 -0.530 -18.533 5.407 21 A_G7:C16_A A 7 ? A 16 ? 19 1 1 A G 23 1_555 A U 30 1_555 -1.766 -0.406 -0.090 -8.273 -11.591 -3.221 22 A_G8:U15_A A 8 ? A 15 ? 28 1 1 A G 24 1_555 A C 29 1_555 0.606 -0.119 -0.061 -1.490 -7.557 0.594 23 A_G9:C14_A A 9 ? A 14 ? 19 1 1 A A 50 1_555 A G 47 1_555 -3.326 3.670 -0.451 17.413 1.776 70.049 24 A_A298:G295_A A 298 ? A 295 ? 10 6 1 A G 51 1_555 A U 46 1_555 -1.842 -0.446 -0.322 -6.585 -12.044 -3.324 25 A_G299:U294_A A 299 ? A 294 ? 28 1 1 A G 52 1_555 A C 45 1_555 0.531 -0.175 0.712 11.049 -4.882 4.529 26 A_G300:C293_A A 300 ? A 293 ? 19 1 1 A G 53 1_555 A C 44 1_555 0.109 -0.078 -0.264 -10.977 -3.473 -4.612 27 A_G301:C292_A A 301 ? A 292 ? 19 1 1 A U 54 1_555 A G 43 1_555 2.172 -0.440 0.376 -17.164 4.149 -9.694 28 A_U302:G291_A A 302 ? A 291 ? 28 1 1 A G 55 1_555 A C 66 1_555 -0.535 -0.464 0.643 -9.097 6.008 -2.765 29 A_G303:C314_A A 303 ? A 314 ? 19 1 1 A C 56 1_555 A G 65 1_555 0.231 -0.298 0.798 -1.169 4.923 11.087 30 A_C304:G313_A A 304 ? A 313 ? 19 1 1 A U 57 1_555 A U 64 1_555 0.637 -1.318 -0.668 14.545 3.453 -7.323 31 A_U305:U312_A A 305 ? A 312 ? ? ? 1 A C 77 1_555 A G 63 1_555 -0.505 -0.046 0.372 -7.047 6.265 -1.671 32 A_C325:G311_A A 325 ? A 311 ? 19 1 1 A U 78 1_555 A A 62 1_555 -0.785 -0.089 -0.329 1.221 -19.426 -1.395 33 A_U326:A310_A A 326 ? A 310 ? 20 1 1 A C 79 1_555 A G 61 1_555 0.708 -0.281 -0.678 7.042 -16.637 3.317 34 A_C327:G309_A A 327 ? A 309 ? 19 1 1 A G 80 1_555 A C 60 1_555 -0.755 -0.215 -0.018 -5.837 -9.687 4.820 35 A_G328:C308_A A 328 ? A 308 ? 19 1 1 A U 81 1_555 A G 59 1_555 2.919 -0.598 -0.766 -3.295 0.753 -1.787 36 A_U329:G307_A A 329 ? A 307 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 75 1_555 A C 2 1_555 A G 74 1_555 0.158 -1.561 2.846 -1.865 7.268 27.760 -4.467 -0.657 2.354 14.808 3.799 28.737 1 AA_C125C126:G322G323_AA A 125 ? A 323 ? A 126 ? A 322 ? 1 A C 2 1_555 A G 74 1_555 A U 3 1_555 A A 73 1_555 -0.417 -1.435 3.174 -5.550 2.357 29.124 -3.275 -0.311 3.076 4.625 10.890 29.729 2 AA_C126U127:A321G322_AA A 126 ? A 322 ? A 127 ? A 321 ? 1 A U 3 1_555 A A 73 1_555 A C 4 1_555 A G 72 1_555 -0.095 -1.980 3.882 -2.982 6.088 28.654 -5.367 -0.533 3.390 12.087 5.922 29.428 3 AA_U127C128:G320A321_AA A 127 ? A 321 ? A 128 ? A 320 ? 1 A C 4 1_555 A G 72 1_555 A C 5 1_555 A G 71 1_555 -0.374 -1.923 3.088 -6.435 1.407 33.740 -3.462 -0.316 3.025 2.396 10.957 34.359 4 AA_C128C129:G319G320_AA A 128 ? A 320 ? A 129 ? A 319 ? 1 A C 5 1_555 A G 71 1_555 A C 6 1_555 A G 70 1_555 -0.504 -1.742 3.349 5.504 1.527 31.080 -3.483 1.945 3.129 2.821 -10.164 31.587 5 AA_C129C130:G318G319_AA A 129 ? A 319 ? A 130 ? A 318 ? 1 A C 6 1_555 A G 70 1_555 A G 7 1_555 A C 69 1_555 -0.015 -1.479 4.205 0.342 12.485 29.105 -5.485 0.104 3.306 23.524 -0.644 31.618 6 AA_C130G131:C317G318_AA A 130 ? A 318 ? A 131 ? A 317 ? 1 A G 7 1_555 A C 69 1_555 A G 8 1_555 A C 68 1_555 0.200 -1.908 3.247 -1.985 5.332 29.857 -4.647 -0.756 2.852 10.231 3.809 30.382 7 AA_G131G132:C316C317_AA A 131 ? A 317 ? A 132 ? A 316 ? 1 A G 8 1_555 A C 68 1_555 A G 9 1_555 A C 67 1_555 0.133 -2.606 3.294 -1.118 6.257 32.129 -5.630 -0.415 2.745 11.169 1.995 32.735 8 AA_G132G133:C315C316_AA A 132 ? A 316 ? A 133 ? A 315 ? 1 A G 9 1_555 A C 67 1_555 A A 10 1_555 A U 42 1_555 -0.450 -1.378 3.296 6.260 -2.071 41.644 -1.701 1.276 3.259 -2.891 -8.740 42.140 9 AA_G133A134:U290C315_AA A 133 ? A 315 ? A 134 ? A 290 ? 1 A A 10 1_555 A U 42 1_555 A G 11 1_555 A C 41 1_555 1.704 -0.679 3.345 5.195 15.033 30.637 -3.540 -2.052 2.947 26.341 -9.103 34.432 10 AA_A134G135:C289U290_AA A 134 ? A 290 ? A 135 ? A 289 ? 1 A G 11 1_555 A C 41 1_555 A U 49 1_555 A A 40 1_555 -1.596 -1.472 3.269 -7.274 12.866 47.218 -2.704 1.380 2.996 15.621 8.832 49.351 11 AA_G135U297:A288C289_AA A 135 ? A 289 ? A 297 ? A 288 ? 1 A U 49 1_555 A A 40 1_555 A G 13 1_555 A U 39 1_555 1.773 -3.468 3.021 5.240 6.019 1.059 -34.018 -4.518 -1.041 62.189 -54.138 8.050 12 AA_U297G137:U287A288_AA A 297 ? A 288 ? A 137 ? A 287 ? 1 A G 13 1_555 A U 39 1_555 A C 14 1_555 A G 38 1_555 -0.780 -0.751 2.719 -3.932 2.644 38.864 -1.386 0.771 2.727 3.956 5.882 39.141 13 AA_G137C138:G286U287_AA A 137 ? A 287 ? A 138 ? A 286 ? 1 A C 14 1_555 A G 38 1_555 A C 15 1_555 A G 37 1_555 0.024 -1.389 3.200 -5.906 11.295 31.493 -4.031 -0.903 2.523 19.824 10.366 33.914 14 AA_C138C139:G285G286_AA A 138 ? A 286 ? A 139 ? A 285 ? 1 A C 15 1_555 A G 37 1_555 A G 16 1_555 A C 36 1_555 0.477 -1.927 3.380 -0.883 4.186 29.062 -4.692 -1.129 3.063 8.285 1.747 29.369 15 AA_C139G1:C21G285_AA A 139 ? A 285 ? A 1 ? A 21 ? 1 A G 16 1_555 A C 36 1_555 A C 17 1_555 A G 35 1_555 -0.327 -2.153 3.179 0.653 -1.165 35.520 -3.360 0.628 3.240 -1.909 -1.070 35.545 16 AA_G1C2:G20C21_AA A 1 ? A 21 ? A 2 ? A 20 ? 1 A C 17 1_555 A G 35 1_555 A A 33 1_555 A U 18 1_555 0.175 -5.306 0.143 -129.297 -102.114 97.532 -2.394 -0.429 2.175 -52.219 66.120 169.970 17 AA_C2A18:U3G20_AA A 2 ? A 20 ? A 18 ? A 3 ? 1 A A 33 1_555 A U 18 1_555 A A 20 1_555 A U 34 1_555 -3.404 4.190 2.517 -141.042 -6.312 62.770 2.268 -0.091 4.066 -3.559 79.523 147.040 18 AA_A18A5:U19U3_AA A 18 ? A 3 ? A 5 ? A 19 ? 1 A A 20 1_555 A U 34 1_555 A G 21 1_555 A U 32 1_555 4.967 -0.527 2.262 -8.580 27.466 52.496 -1.309 -5.258 1.127 28.745 8.980 59.371 19 AA_A5G6:U17U19_AA A 5 ? A 19 ? A 6 ? A 17 ? 1 A G 21 1_555 A U 32 1_555 A G 22 1_555 A C 31 1_555 0.526 -1.016 3.269 -1.576 8.282 36.680 -2.614 -1.013 2.954 12.951 2.465 37.604 20 AA_G6G7:C16U17_AA A 6 ? A 17 ? A 7 ? A 16 ? 1 A G 22 1_555 A C 31 1_555 A G 23 1_555 A U 30 1_555 -0.118 -2.280 3.181 -2.545 9.110 22.862 -7.667 -0.379 2.128 21.823 6.096 24.717 21 AA_G7G8:U15C16_AA A 7 ? A 16 ? A 8 ? A 15 ? 1 A G 23 1_555 A U 30 1_555 A G 24 1_555 A C 29 1_555 -0.177 -1.304 3.231 1.696 1.501 42.766 -1.933 0.408 3.176 2.057 -2.324 42.823 22 AA_G8G9:C14U15_AA A 8 ? A 15 ? A 9 ? A 14 ? 1 A A 50 1_555 A G 47 1_555 A G 51 1_555 A U 46 1_555 4.750 2.770 3.702 10.125 -8.143 108.033 1.825 -2.776 3.851 -5.020 -6.242 108.566 23 AA_A298G299:U294G295_AA A 298 ? A 295 ? A 299 ? A 294 ? 1 A G 51 1_555 A U 46 1_555 A G 52 1_555 A C 45 1_555 0.909 -1.150 2.798 -2.331 4.034 37.658 -2.197 -1.645 2.607 6.221 3.594 37.935 24 AA_G299G300:C293U294_AA A 299 ? A 294 ? A 300 ? A 293 ? 1 A G 52 1_555 A C 45 1_555 A G 53 1_555 A C 44 1_555 0.062 -2.726 3.474 10.198 11.457 27.056 -7.099 1.667 2.070 22.353 -19.897 31.031 25 AA_G300G301:C292C293_AA A 300 ? A 293 ? A 301 ? A 292 ? 1 A G 53 1_555 A C 44 1_555 A U 54 1_555 A G 43 1_555 0.348 -1.751 3.427 1.343 -0.961 43.155 -2.280 -0.333 3.472 -1.306 -1.826 43.185 26 AA_G301U302:G291C292_AA A 301 ? A 292 ? A 302 ? A 291 ? 1 A U 54 1_555 A G 43 1_555 A G 55 1_555 A C 66 1_555 -1.553 -4.047 3.063 2.636 -8.564 -6.109 26.690 -6.596 -1.089 53.314 16.408 -10.842 27 AA_U302G303:C314G291_AA A 302 ? A 291 ? A 303 ? A 314 ? 1 A G 55 1_555 A C 66 1_555 A C 56 1_555 A G 65 1_555 0.491 -1.983 2.982 -2.140 7.720 36.168 -4.002 -1.017 2.489 12.250 3.396 37.015 28 AA_G303C304:G313C314_AA A 303 ? A 314 ? A 304 ? A 313 ? 1 A C 56 1_555 A G 65 1_555 A U 57 1_555 A U 64 1_555 -1.286 -1.271 2.557 12.002 24.154 30.523 -3.453 2.660 0.832 37.914 -18.839 40.519 29 AA_C304U305:U312G313_AA A 304 ? A 313 ? A 305 ? A 312 ? 1 A U 57 1_555 A U 64 1_555 A C 77 1_555 A G 63 1_555 -2.933 0.251 3.330 -27.357 10.157 60.300 -0.266 1.344 4.184 9.536 25.684 66.388 30 AA_U305C325:G311U312_AA A 305 ? A 312 ? A 325 ? A 311 ? 1 A C 77 1_555 A G 63 1_555 A U 78 1_555 A A 62 1_555 -1.378 -2.764 2.902 1.874 -8.026 25.068 -3.907 3.524 3.493 -17.885 -4.175 26.368 31 AA_C325U326:A310G311_AA A 325 ? A 311 ? A 326 ? A 310 ? 1 A U 78 1_555 A A 62 1_555 A C 79 1_555 A G 61 1_555 -0.180 -1.053 3.177 1.344 6.197 37.441 -2.366 0.439 2.964 9.570 -2.076 37.955 32 AA_U326C327:G309A310_AA A 326 ? A 310 ? A 327 ? A 309 ? 1 A C 79 1_555 A G 61 1_555 A G 80 1_555 A C 60 1_555 0.784 -1.584 3.326 -5.779 16.262 27.616 -5.319 -2.286 1.924 30.577 10.866 32.476 33 AA_C327G328:C308G309_AA A 327 ? A 309 ? A 328 ? A 308 ? 1 A G 80 1_555 A C 60 1_555 A U 81 1_555 A G 59 1_555 -0.243 -1.249 3.056 8.608 10.975 46.984 -2.251 0.876 2.639 13.424 -10.528 48.898 34 AA_G328U329:G307C308_AA A 328 ? A 308 ? A 329 ? A 307 ? # _atom_sites.entry_id 3T4B _atom_sites.fract_transf_matrix[1][1] 0.008819 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008819 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011335 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NI O P # loop_