data_3T4G
#
_entry.id 3T4G
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.381
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3T4G pdb_00003t4g 10.2210/pdb3t4g/pdb
RCSB RCSB067024 ? ?
WWPDB D_1000067024 ? ?
#
_pdbx_database_status.entry_id 3T4G
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2011-07-26
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Zhao, M.' 1
'Liu, C.' 2
'Cheng, P.N.' 3
'Eisenberg, D.' 4
'Nowick, J.S.' 5
#
_citation.id primary
_citation.title 'Amyloid beta-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity.'
_citation.journal_abbrev 'Nat Chem'
_citation.journal_volume 4
_citation.page_first 927
_citation.page_last 933
_citation.year 2012
_citation.journal_id_ASTM ?
_citation.country UK
_citation.journal_id_ISSN 1755-4330
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 23089868
_citation.pdbx_database_id_DOI 10.1038/nchem.1433
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Cheng, P.N.' 1 ?
primary 'Liu, C.' 2 ?
primary 'Zhao, M.' 3 ?
primary 'Eisenberg, D.' 4 ?
primary 'Nowick, J.S.' 5 ?
#
_cell.entry_id 3T4G
_cell.length_a 44.390
_cell.length_b 44.390
_cell.length_c 44.390
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 24
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3T4G
_symmetry.space_group_name_H-M 'P 2 3'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 195
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Cyclic pseudo-peptide (ORN)AIIGLMV(ORN)KF(HAO)(4BF)K' 1811.035 2 ? ? ? ?
2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 5 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(ORN)AIIGLMV(ORN)KF(HAO)(4BF)K'
_entity_poly.pdbx_seq_one_letter_code_can AAIIGLMVAKFXYK
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ORN n
1 2 ALA n
1 3 ILE n
1 4 ILE n
1 5 GLY n
1 6 LEU n
1 7 MET n
1 8 VAL n
1 9 ORN n
1 10 LYS n
1 11 PHE n
1 12 HAO n
1 13 4BF n
1 14 LYS n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Synthetic construct'
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3T4G
_struct_ref.pdbx_db_accession 3T4G
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code AAIIGLMVAKFXYK
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3T4G A 1 ? 14 ? 3T4G 0 ? 13 ? 0 13
2 1 3T4G B 1 ? 14 ? 3T4G 0 ? 13 ? 0 13
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
4BF 'L-peptide linking' n 4-BROMO-L-PHENYLALANINE P-BROMO-L-PHENYLALANINE
'C9 H10 Br N O2' 244.085
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2'
89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2'
75.067
HAO peptide-like . '{[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo)acetic acid' ? 'C10 H11 N3 O5'
253.211
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2'
131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2'
131.173
LYS 'L-peptide linking' y LYSINE ?
'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S'
149.211
MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2'
118.174
ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2'
132.161
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2'
165.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2'
117.146
#
_exptl.entry_id 3T4G
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.01
_exptl_crystal.density_percent_sol 38.88
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 290
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
'35% (v/v) 2-methyl-2,4-pentanediol, Na/K phosphate buffer pH6.2, pH 7.0, vapor diffusion, hanging drop, temperature 290K'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2011-03-04
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol SIRAS
_diffrn_radiation.pdbx_scattering_type x-ray
#
loop_
_diffrn_radiation_wavelength.id
_diffrn_radiation_wavelength.wavelength
_diffrn_radiation_wavelength.wt
1 0.9196 1.0
2 1.8443 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-C'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-C
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list '0.9196, 1.8443'
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 3T4G
_reflns.observed_criterion_sigma_I -3.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low ?
_reflns.d_resolution_high 1.700
_reflns.number_obs 3384
_reflns.number_all ?
_reflns.percent_possible_obs 99.500
_reflns.pdbx_Rmerge_I_obs 0.035
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 29.740
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
loop_
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_unique_obs
_reflns_shell.pdbx_chi_squared
1 1 1.700 1.740 95.900 0.513 ? 3.070 ? ? ? ? ? ? ?
1 2 1.740 1.790 99.600 0.547 ? 3.730 ? ? ? ? ? ? ?
1 3 1.790 1.840 100.000 0.394 ? 5.580 ? ? ? ? ? ? ?
1 4 1.840 1.900 99.100 0.315 ? 7.120 ? ? ? ? ? ? ?
1 5 1.900 1.960 100.0 0.216 ? 9.790 ? ? ? ? ? ? ?
1 6 1.960 2.030 100.000 0.192 ? 11.440 ? ? ? ? ? ? ?
1 7 2.030 2.100 100.000 0.137 ? 16.160 ? ? ? ? ? ? ?
1 8 2.100 2.190 99.500 0.109 ? 20.400 ? ? ? ? ? ? ?
1 9 2.190 2.290 100.0 0.096 ? 21.760 ? ? ? ? ? ? ?
1 10 2.290 2.400 100.000 0.110 ? 19.870 ? ? ? ? ? ? ?
1 11 2.400 2.530 100.000 0.056 ? 37.630 ? ? ? ? ? ? ?
1 12 2.530 2.680 100.000 0.057 ? 33.510 ? ? ? ? ? ? ?
1 13 2.680 2.870 100.000 0.046 ? 44.380 ? ? ? ? ? ? ?
1 14 2.870 3.100 100.000 0.033 ? 59.290 ? ? ? ? ? ? ?
1 15 3.100 3.390 100.000 0.027 ? 64.670 ? ? ? ? ? ? ?
1 16 3.390 3.790 98.400 0.020 ? 76.620 ? ? ? ? ? ? ?
1 17 3.790 4.380 100.0 0.017 ? 92.620 ? ? ? ? ? ? ?
1 18 4.380 5.360 100.000 0.017 ? 93.460 ? ? ? ? ? ? ?
1 19 5.360 7.580 100.000 0.016 ? 87.140 ? ? ? ? ? ? ?
1 20 7.580 ? 89.800 0.015 ? 84.590 ? ? ? ? ? ? ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 3T4G
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 3047
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 18.12
_refine.ls_d_res_high 1.70
_refine.ls_percent_reflns_obs 99.53
_refine.ls_R_factor_obs 0.24031
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.23629
_refine.ls_R_factor_R_free 0.27424
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 9.7
_refine.ls_number_reflns_R_free 326
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min 0.300
_refine.occupancy_max 1.000
_refine.correlation_coeff_Fo_to_Fc 0.945
_refine.correlation_coeff_Fo_to_Fc_free 0.927
_refine.B_iso_mean 28.374
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct SIRAS
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.035
_refine.pdbx_overall_ESU_R_Free 0.031
_refine.overall_SU_ML 0.072
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 4.277
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 240
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 40
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 280
_refine_hist.d_res_high 1.70
_refine_hist.d_res_low 18.12
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.022 0.022 ? 295 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.004 0.020 ? 214 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.729 2.357 ? 398 'X-RAY DIFFRACTION' ?
r_angle_other_deg 1.901 3.015 ? 493 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 6.272 5.000 ? 14 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 7.373 20.000 ? 2 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 21.334 15.000 ? 34 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.107 0.200 ? 39 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.026 0.021 ? 254 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.016 0.021 ? 50 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 2.413 1.500 ? 126 'X-RAY DIFFRACTION' ?
r_mcbond_other 0.744 1.500 ? 66 'X-RAY DIFFRACTION' ?
r_mcangle_it 3.811 2.000 ? 207 'X-RAY DIFFRACTION' ?
r_scbond_it 5.207 3.000 ? 169 'X-RAY DIFFRACTION' ?
r_scangle_it 7.000 4.500 ? 191 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.699
_refine_ls_shell.d_res_low 1.743
_refine_ls_shell.number_reflns_R_work 220
_refine_ls_shell.R_factor_R_work 0.241
_refine_ls_shell.percent_reflns_obs 98.80
_refine_ls_shell.R_factor_R_free 0.377
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 28
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_struct.entry_id 3T4G
_struct.title
;AIIGLMV segment from Alzheimer's Amyloid-Beta displayed on 54-membered macrocycle scaffold
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3T4G
_struct_keywords.text 'amyloid-related, macrocycle, hao, UNKNOWN FUNCTION'
_struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
E N N 2 ?
F N N 2 ?
G N N 2 ?
#
_struct_biol.id 1
_struct_biol.details 'biological unit is the same as asym.'
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A ORN 1 C ? ? ? 1_555 A ALA 2 N ? ? A ORN 0 A ALA 1 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale2 covale both ? A ORN 1 NE ? ? ? 1_555 A LYS 14 C ? ? A ORN 0 A LYS 13 1_555 ? ? ? ? ? ? ? 1.338 ? ?
covale3 covale both ? A VAL 8 C ? ? ? 1_555 A ORN 9 NE ? ? A VAL 7 A ORN 8 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale4 covale both ? A ORN 9 C ? ? ? 1_555 A LYS 10 N ? ? A ORN 8 A LYS 9 1_555 ? ? ? ? ? ? ? 1.314 ? ?
covale5 covale both ? A PHE 11 C ? ? ? 1_555 A HAO 12 N ? ? A PHE 10 A HAO 11 1_555 ? ? ? ? ? ? ? 1.339 ? ?
covale6 covale both ? A HAO 12 C ? ? ? 1_555 A 4BF 13 N ? ? A HAO 11 A 4BF 12 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale7 covale both ? A 4BF 13 C ? ? ? 1_555 A LYS 14 N ? ? A 4BF 12 A LYS 13 1_555 ? ? ? ? ? ? ? 1.332 ? ?
covale8 covale both ? B ORN 1 C ? ? ? 1_555 B ALA 2 N ? ? B ORN 0 B ALA 1 1_555 ? ? ? ? ? ? ? 1.331 ? ?
covale9 covale both ? B ORN 1 NE ? ? ? 1_555 B LYS 14 C ? ? B ORN 0 B LYS 13 1_555 ? ? ? ? ? ? ? 1.341 ? ?
covale10 covale both ? B VAL 8 C ? ? ? 1_555 B ORN 9 NE ? ? B VAL 7 B ORN 8 1_555 ? ? ? ? ? ? ? 1.336 ? ?
covale11 covale both ? B ORN 9 C ? ? ? 1_555 B LYS 10 N ? ? B ORN 8 B LYS 9 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale12 covale both ? B PHE 11 C ? ? ? 1_555 B HAO 12 N ? ? B PHE 10 B HAO 11 1_555 ? ? ? ? ? ? ? 1.344 ? ?
covale13 covale both ? B HAO 12 C ? ? ? 1_555 B 4BF 13 N ? ? B HAO 11 B 4BF 12 1_555 ? ? ? ? ? ? ? 1.317 ? ?
covale14 covale both ? B 4BF 13 C ? ? ? 1_555 B LYS 14 N ? ? B 4BF 12 B LYS 13 1_555 ? ? ? ? ? ? ? 1.333 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A MPD 14 ? 6 'BINDING SITE FOR RESIDUE MPD A 14'
AC2 Software B MPD 14 ? 5 'BINDING SITE FOR RESIDUE MPD B 14'
AC3 Software A MPD 15 ? 4 'BINDING SITE FOR RESIDUE MPD A 15'
AC4 Software B MPD 15 ? 2 'BINDING SITE FOR RESIDUE MPD B 15'
AC5 Software B MPD 16 ? 5 'BINDING SITE FOR RESIDUE MPD B 16'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 ILE A 4 ? ILE A 3 . ? 1_555 ?
2 AC1 6 PHE A 11 ? PHE A 10 . ? 1_555 ?
3 AC1 6 HAO A 12 ? HAO A 11 . ? 1_555 ?
4 AC1 6 ILE B 3 ? ILE B 2 . ? 1_555 ?
5 AC1 6 4BF B 13 ? 4BF B 12 . ? 11_555 ?
6 AC1 6 MPD E . ? MPD B 14 . ? 1_555 ?
7 AC2 5 ILE A 3 ? ILE A 2 . ? 1_555 ?
8 AC2 5 4BF A 13 ? 4BF A 12 . ? 8_555 ?
9 AC2 5 MPD C . ? MPD A 14 . ? 1_555 ?
10 AC2 5 ILE B 3 ? ILE B 2 . ? 1_555 ?
11 AC2 5 HAO B 12 ? HAO B 11 . ? 1_555 ?
12 AC3 4 LEU A 6 ? LEU A 5 . ? 2_655 ?
13 AC3 4 HAO A 12 ? HAO A 11 . ? 2_655 ?
14 AC3 4 HAO A 12 ? HAO A 11 . ? 1_555 ?
15 AC3 4 4BF A 13 ? 4BF A 12 . ? 1_555 ?
16 AC4 2 ORN B 9 ? ORN B 8 . ? 6_565 ?
17 AC4 2 LYS B 14 ? LYS B 13 . ? 1_555 ?
18 AC5 5 LEU B 6 ? LEU B 5 . ? 4_565 ?
19 AC5 5 LYS B 10 ? LYS B 9 . ? 4_565 ?
20 AC5 5 HAO B 12 ? HAO B 11 . ? 4_565 ?
21 AC5 5 HAO B 12 ? HAO B 11 . ? 1_555 ?
22 AC5 5 4BF B 13 ? 4BF B 12 . ? 1_555 ?
#
_atom_sites.entry_id 3T4G
_atom_sites.fract_transf_matrix[1][1] 0.022528
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.022528
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022528
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ORN 1 0 0 ORN ORN A . n
A 1 2 ALA 2 1 1 ALA ALA A . n
A 1 3 ILE 3 2 2 ILE ILE A . n
A 1 4 ILE 4 3 3 ILE ILE A . n
A 1 5 GLY 5 4 4 GLY GLY A . n
A 1 6 LEU 6 5 5 LEU LEU A . n
A 1 7 MET 7 6 6 MET MET A . n
A 1 8 VAL 8 7 7 VAL VAL A . n
A 1 9 ORN 9 8 8 ORN ORN A . n
A 1 10 LYS 10 9 9 LYS LYS A . n
A 1 11 PHE 11 10 10 PHE PHE A . n
A 1 12 HAO 12 11 11 HAO HAO A . n
A 1 13 4BF 13 12 12 4BF 4BF A . n
A 1 14 LYS 14 13 13 LYS LYS A . n
B 1 1 ORN 1 0 0 ORN ORN B . n
B 1 2 ALA 2 1 1 ALA ALA B . n
B 1 3 ILE 3 2 2 ILE ILE B . n
B 1 4 ILE 4 3 3 ILE ILE B . n
B 1 5 GLY 5 4 4 GLY GLY B . n
B 1 6 LEU 6 5 5 LEU LEU B . n
B 1 7 MET 7 6 6 MET MET B . n
B 1 8 VAL 8 7 7 VAL VAL B . n
B 1 9 ORN 9 8 8 ORN ORN B . n
B 1 10 LYS 10 9 9 LYS LYS B . n
B 1 11 PHE 11 10 10 PHE PHE B . n
B 1 12 HAO 12 11 11 HAO HAO B . n
B 1 13 4BF 13 12 12 4BF 4BF B . n
B 1 14 LYS 14 13 13 LYS LYS B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD 1 14 1 MPD MPD A .
D 2 MPD 1 15 1 MPD MPD A .
E 2 MPD 1 14 1 MPD MPD B .
F 2 MPD 1 15 1 MPD MPD B .
G 2 MPD 1 16 1 MPD MPD B .
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ORN 1 A ORN 0 ? ALA L-ORNITHINE
2 A ORN 9 A ORN 8 ? ALA L-ORNITHINE
3 A 4BF 13 A 4BF 12 ? TYR 4-BROMO-L-PHENYLALANINE
4 B ORN 1 B ORN 0 ? ALA L-ORNITHINE
5 B ORN 9 B ORN 8 ? ALA L-ORNITHINE
6 B 4BF 13 B 4BF 12 ? TYR 4-BROMO-L-PHENYLALANINE
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? dimeric 2
2 software_defined_assembly PISA tetrameric 4
3 software_defined_assembly PISA dimeric 2
4 software_defined_assembly PISA tetrameric 4
5 software_defined_assembly PISA tetrameric 4
6 software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E,F,G
2 1,2,3,4 A,C,D
3 1,3 A,C,D
4 1,3 A,B,C,D,E,F,G
5 1,5,3,6 B,E,F,G
6 1,3 B,E,F,G
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
2 'ABSA (A^2)' 2650 ?
2 MORE -30 ?
2 'SSA (A^2)' 4750 ?
3 'ABSA (A^2)' 680 ?
3 MORE -6 ?
3 'SSA (A^2)' 3020 ?
4 'ABSA (A^2)' 2240 ?
4 MORE -16 ?
4 'SSA (A^2)' 5310 ?
5 'ABSA (A^2)' 2760 ?
5 MORE -26 ?
5 'SSA (A^2)' 4940 ?
6 'ABSA (A^2)' 690 ?
6 MORE -6 ?
6 'SSA (A^2)' 3160 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 44.3900000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 44.3900000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 44.3900000000 0.0000000000 -1.0000000000
0.0000000000 44.3900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 44.3900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-10-31
2 'Structure model' 1 1 2014-07-16
3 'Structure model' 1 2 2017-10-11
4 'Structure model' 2 0 2023-11-15
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' Advisory
3 3 'Structure model' 'Data collection'
4 4 'Structure model' 'Atomic model'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
7 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' pdbx_validate_polymer_linkage
2 3 'Structure model' reflns_shell
3 4 'Structure model' atom_site
4 4 'Structure model' atom_site_anisotrop
5 4 'Structure model' chem_comp_atom
6 4 'Structure model' chem_comp_bond
7 4 'Structure model' database_2
8 4 'Structure model' pdbx_validate_rmsd_angle
9 4 'Structure model' struct_conn
10 4 'Structure model' struct_ref_seq
11 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_reflns_shell.percent_possible_all'
2 4 'Structure model' '_atom_site.auth_atom_id'
3 4 'Structure model' '_atom_site.label_atom_id'
4 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
5 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
6 4 'Structure model' '_database_2.pdbx_DOI'
7 4 'Structure model' '_database_2.pdbx_database_accession'
8 4 'Structure model' '_struct_conn.pdbx_dist_value'
9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'
24 4 'Structure model' '_struct_ref_seq.db_align_beg'
25 4 'Structure model' '_struct_ref_seq.db_align_end'
26 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
27 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
28 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][3]
'X-RAY DIFFRACTION' 1 ? refined 19.0949 4.6588 -4.2862 0.1691 0.0779 0.0454 0.0299 -0.0086 0.0155 3.0520 3.4165 0.5887 1.3559
1.3368 0.6334 0.2718 -0.0204 0.1824 -0.3850 -0.3239 0.0125 0.1300 -0.0148 0.0522
'X-RAY DIFFRACTION' 2 ? refined 17.7448 17.3045 -2.4800 0.0538 0.0740 0.2113 0.0027 -0.0053 -0.0162 0.0604 2.8063 0.8195 0.2187
0.1674 -0.1013 0.0215 0.0067 0.0875 0.0051 -0.1294 0.4090 0.1751 0.0947 0.1080
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 13 ? ? ? ?
'X-RAY DIFFRACTION' 2 2 B 0 ? ? B 13 ? ? ? ?
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling'
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ?
2 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 BR B 4BF 12 ? ? 1_555 C5 A MPD 14 ? ? 8_555 1.01
2 1 BR B 4BF 12 ? ? 1_555 C4 A MPD 14 ? ? 8_555 1.08
3 1 BR A 4BF 12 ? ? 1_555 O2 B MPD 14 ? ? 11_555 1.10
4 1 BR A 4BF 12 ? ? 1_555 C2 B MPD 14 ? ? 11_555 1.41
5 1 BR B 4BF 12 ? ? 1_555 O4 A MPD 14 ? ? 8_555 1.47
6 1 BR A 4BF 12 ? ? 1_555 CM B MPD 14 ? ? 11_555 1.64
7 1 CE2 A 4BF 12 ? ? 1_555 C1 B MPD 14 ? ? 11_555 1.79
8 1 CZ A 4BF 12 ? ? 1_555 C1 B MPD 14 ? ? 11_555 1.97
9 1 CZ B 4BF 12 ? ? 1_555 C4 A MPD 14 ? ? 8_555 2.15
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CA A HAO 11 ? ? C A HAO 11 ? ? N A 4BF 12 ? ? 140.12 117.20 22.92 2.20 Y
2 1 CA B HAO 11 ? ? C B HAO 11 ? ? N B 4BF 12 ? ? 142.69 117.20 25.49 2.20 Y
#
loop_
_pdbx_validate_main_chain_plane.id
_pdbx_validate_main_chain_plane.PDB_model_num
_pdbx_validate_main_chain_plane.auth_comp_id
_pdbx_validate_main_chain_plane.auth_asym_id
_pdbx_validate_main_chain_plane.auth_seq_id
_pdbx_validate_main_chain_plane.PDB_ins_code
_pdbx_validate_main_chain_plane.label_alt_id
_pdbx_validate_main_chain_plane.improper_torsion_angle
1 1 4BF A 12 ? ? 10.50
2 1 4BF B 12 ? ? 13.03
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A LYS 9 ? CG ? A LYS 10 CG
2 1 Y 1 A LYS 9 ? CD ? A LYS 10 CD
3 1 Y 1 A LYS 9 ? CE ? A LYS 10 CE
4 1 Y 1 A LYS 9 ? NZ ? A LYS 10 NZ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
4BF CD1 C Y N 1
4BF CE1 C Y N 2
4BF CZ C Y N 3
4BF BR BR N N 4
4BF CE2 C Y N 5
4BF CD2 C Y N 6
4BF CG C Y N 7
4BF CB C N N 8
4BF CA C N S 9
4BF N N N N 10
4BF C C N N 11
4BF OXT O N N 12
4BF O O N N 13
4BF HD1 H N N 14
4BF HE1 H N N 15
4BF HE2 H N N 16
4BF HD2 H N N 17
4BF HB3 H N N 18
4BF HB2 H N N 19
4BF HA H N N 20
4BF H H N N 21
4BF H2 H N N 22
4BF HXT H N N 23
ALA N N N N 24
ALA CA C N S 25
ALA C C N N 26
ALA O O N N 27
ALA CB C N N 28
ALA OXT O N N 29
ALA H H N N 30
ALA H2 H N N 31
ALA HA H N N 32
ALA HB1 H N N 33
ALA HB2 H N N 34
ALA HB3 H N N 35
ALA HXT H N N 36
GLY N N N N 37
GLY CA C N N 38
GLY C C N N 39
GLY O O N N 40
GLY OXT O N N 41
GLY H H N N 42
GLY H2 H N N 43
GLY HA2 H N N 44
GLY HA3 H N N 45
GLY HXT H N N 46
HAO N N N N 47
HAO N9 N N N 48
HAO C10 C N N 49
HAO O11 O N N 50
HAO CA C Y N 51
HAO C13 C Y N 52
HAO C14 C Y N 53
HAO C15 C N N 54
HAO O15 O N N 55
HAO C17 C Y N 56
HAO C18 C Y N 57
HAO C19 C Y N 58
HAO N20 N N N 59
HAO C21 C N N 60
HAO O22 O N N 61
HAO C C N N 62
HAO O O N N 63
HAO H H N N 64
HAO H13 H N N 65
HAO H15 H N N 66
HAO H15A H N N 67
HAO H15B H N N 68
HAO H17 H N N 69
HAO H18 H N N 70
HAO HN20 H N N 71
HAO OXT O N N 72
HAO H2 H N N 73
HAO H10 H N N 74
HAO HXT H N N 75
ILE N N N N 76
ILE CA C N S 77
ILE C C N N 78
ILE O O N N 79
ILE CB C N S 80
ILE CG1 C N N 81
ILE CG2 C N N 82
ILE CD1 C N N 83
ILE OXT O N N 84
ILE H H N N 85
ILE H2 H N N 86
ILE HA H N N 87
ILE HB H N N 88
ILE HG12 H N N 89
ILE HG13 H N N 90
ILE HG21 H N N 91
ILE HG22 H N N 92
ILE HG23 H N N 93
ILE HD11 H N N 94
ILE HD12 H N N 95
ILE HD13 H N N 96
ILE HXT H N N 97
LEU N N N N 98
LEU CA C N S 99
LEU C C N N 100
LEU O O N N 101
LEU CB C N N 102
LEU CG C N N 103
LEU CD1 C N N 104
LEU CD2 C N N 105
LEU OXT O N N 106
LEU H H N N 107
LEU H2 H N N 108
LEU HA H N N 109
LEU HB2 H N N 110
LEU HB3 H N N 111
LEU HG H N N 112
LEU HD11 H N N 113
LEU HD12 H N N 114
LEU HD13 H N N 115
LEU HD21 H N N 116
LEU HD22 H N N 117
LEU HD23 H N N 118
LEU HXT H N N 119
LYS N N N N 120
LYS CA C N S 121
LYS C C N N 122
LYS O O N N 123
LYS CB C N N 124
LYS CG C N N 125
LYS CD C N N 126
LYS CE C N N 127
LYS NZ N N N 128
LYS OXT O N N 129
LYS H H N N 130
LYS H2 H N N 131
LYS HA H N N 132
LYS HB2 H N N 133
LYS HB3 H N N 134
LYS HG2 H N N 135
LYS HG3 H N N 136
LYS HD2 H N N 137
LYS HD3 H N N 138
LYS HE2 H N N 139
LYS HE3 H N N 140
LYS HZ1 H N N 141
LYS HZ2 H N N 142
LYS HZ3 H N N 143
LYS HXT H N N 144
MET N N N N 145
MET CA C N S 146
MET C C N N 147
MET O O N N 148
MET CB C N N 149
MET CG C N N 150
MET SD S N N 151
MET CE C N N 152
MET OXT O N N 153
MET H H N N 154
MET H2 H N N 155
MET HA H N N 156
MET HB2 H N N 157
MET HB3 H N N 158
MET HG2 H N N 159
MET HG3 H N N 160
MET HE1 H N N 161
MET HE2 H N N 162
MET HE3 H N N 163
MET HXT H N N 164
MPD C1 C N N 165
MPD C2 C N N 166
MPD O2 O N N 167
MPD CM C N N 168
MPD C3 C N N 169
MPD C4 C N S 170
MPD O4 O N N 171
MPD C5 C N N 172
MPD H11 H N N 173
MPD H12 H N N 174
MPD H13 H N N 175
MPD HO2 H N N 176
MPD HM1 H N N 177
MPD HM2 H N N 178
MPD HM3 H N N 179
MPD H31 H N N 180
MPD H32 H N N 181
MPD H4 H N N 182
MPD HO4 H N N 183
MPD H51 H N N 184
MPD H52 H N N 185
MPD H53 H N N 186
ORN N N N N 187
ORN CA C N S 188
ORN CB C N N 189
ORN CG C N N 190
ORN CD C N N 191
ORN NE N N N 192
ORN C C N N 193
ORN O O N N 194
ORN OXT O N N 195
ORN H H N N 196
ORN H2 H N N 197
ORN HA H N N 198
ORN HB2 H N N 199
ORN HB3 H N N 200
ORN HG2 H N N 201
ORN HG3 H N N 202
ORN HD2 H N N 203
ORN HD3 H N N 204
ORN HE1 H N N 205
ORN HE2 H N N 206
ORN HXT H N N 207
PHE N N N N 208
PHE CA C N S 209
PHE C C N N 210
PHE O O N N 211
PHE CB C N N 212
PHE CG C Y N 213
PHE CD1 C Y N 214
PHE CD2 C Y N 215
PHE CE1 C Y N 216
PHE CE2 C Y N 217
PHE CZ C Y N 218
PHE OXT O N N 219
PHE H H N N 220
PHE H2 H N N 221
PHE HA H N N 222
PHE HB2 H N N 223
PHE HB3 H N N 224
PHE HD1 H N N 225
PHE HD2 H N N 226
PHE HE1 H N N 227
PHE HE2 H N N 228
PHE HZ H N N 229
PHE HXT H N N 230
VAL N N N N 231
VAL CA C N S 232
VAL C C N N 233
VAL O O N N 234
VAL CB C N N 235
VAL CG1 C N N 236
VAL CG2 C N N 237
VAL OXT O N N 238
VAL H H N N 239
VAL H2 H N N 240
VAL HA H N N 241
VAL HB H N N 242
VAL HG11 H N N 243
VAL HG12 H N N 244
VAL HG13 H N N 245
VAL HG21 H N N 246
VAL HG22 H N N 247
VAL HG23 H N N 248
VAL HXT H N N 249
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4BF CD1 CE1 doub Y N 1
4BF CD1 CG sing Y N 2
4BF CD1 HD1 sing N N 3
4BF CE1 CZ sing Y N 4
4BF CE1 HE1 sing N N 5
4BF CZ BR sing N N 6
4BF CZ CE2 doub Y N 7
4BF CE2 CD2 sing Y N 8
4BF CE2 HE2 sing N N 9
4BF CD2 CG doub Y N 10
4BF CD2 HD2 sing N N 11
4BF CG CB sing N N 12
4BF CB CA sing N N 13
4BF CB HB3 sing N N 14
4BF CB HB2 sing N N 15
4BF CA N sing N N 16
4BF CA C sing N N 17
4BF CA HA sing N N 18
4BF N H sing N N 19
4BF N H2 sing N N 20
4BF C OXT sing N N 21
4BF C O doub N N 22
4BF OXT HXT sing N N 23
ALA N CA sing N N 24
ALA N H sing N N 25
ALA N H2 sing N N 26
ALA CA C sing N N 27
ALA CA CB sing N N 28
ALA CA HA sing N N 29
ALA C O doub N N 30
ALA C OXT sing N N 31
ALA CB HB1 sing N N 32
ALA CB HB2 sing N N 33
ALA CB HB3 sing N N 34
ALA OXT HXT sing N N 35
GLY N CA sing N N 36
GLY N H sing N N 37
GLY N H2 sing N N 38
GLY CA C sing N N 39
GLY CA HA2 sing N N 40
GLY CA HA3 sing N N 41
GLY C O doub N N 42
GLY C OXT sing N N 43
GLY OXT HXT sing N N 44
HAO N N9 sing N N 45
HAO N H sing N N 46
HAO C10 N9 sing N N 47
HAO C10 CA sing N N 48
HAO O11 C10 doub N N 49
HAO CA C14 sing Y N 50
HAO C13 CA doub Y N 51
HAO C13 C19 sing Y N 52
HAO C13 H13 sing N N 53
HAO C14 C17 doub Y N 54
HAO C14 O15 sing N N 55
HAO C15 H15 sing N N 56
HAO C15 H15A sing N N 57
HAO C15 H15B sing N N 58
HAO O15 C15 sing N N 59
HAO C17 H17 sing N N 60
HAO C18 C17 sing Y N 61
HAO C18 H18 sing N N 62
HAO C19 C18 doub Y N 63
HAO N20 C19 sing N N 64
HAO N20 HN20 sing N N 65
HAO C21 N20 sing N N 66
HAO C21 O22 doub N N 67
HAO C C21 sing N N 68
HAO C OXT sing N N 69
HAO O C doub N N 70
HAO N H2 sing N N 71
HAO N9 H10 sing N N 72
HAO OXT HXT sing N N 73
ILE N CA sing N N 74
ILE N H sing N N 75
ILE N H2 sing N N 76
ILE CA C sing N N 77
ILE CA CB sing N N 78
ILE CA HA sing N N 79
ILE C O doub N N 80
ILE C OXT sing N N 81
ILE CB CG1 sing N N 82
ILE CB CG2 sing N N 83
ILE CB HB sing N N 84
ILE CG1 CD1 sing N N 85
ILE CG1 HG12 sing N N 86
ILE CG1 HG13 sing N N 87
ILE CG2 HG21 sing N N 88
ILE CG2 HG22 sing N N 89
ILE CG2 HG23 sing N N 90
ILE CD1 HD11 sing N N 91
ILE CD1 HD12 sing N N 92
ILE CD1 HD13 sing N N 93
ILE OXT HXT sing N N 94
LEU N CA sing N N 95
LEU N H sing N N 96
LEU N H2 sing N N 97
LEU CA C sing N N 98
LEU CA CB sing N N 99
LEU CA HA sing N N 100
LEU C O doub N N 101
LEU C OXT sing N N 102
LEU CB CG sing N N 103
LEU CB HB2 sing N N 104
LEU CB HB3 sing N N 105
LEU CG CD1 sing N N 106
LEU CG CD2 sing N N 107
LEU CG HG sing N N 108
LEU CD1 HD11 sing N N 109
LEU CD1 HD12 sing N N 110
LEU CD1 HD13 sing N N 111
LEU CD2 HD21 sing N N 112
LEU CD2 HD22 sing N N 113
LEU CD2 HD23 sing N N 114
LEU OXT HXT sing N N 115
LYS N CA sing N N 116
LYS N H sing N N 117
LYS N H2 sing N N 118
LYS CA C sing N N 119
LYS CA CB sing N N 120
LYS CA HA sing N N 121
LYS C O doub N N 122
LYS C OXT sing N N 123
LYS CB CG sing N N 124
LYS CB HB2 sing N N 125
LYS CB HB3 sing N N 126
LYS CG CD sing N N 127
LYS CG HG2 sing N N 128
LYS CG HG3 sing N N 129
LYS CD CE sing N N 130
LYS CD HD2 sing N N 131
LYS CD HD3 sing N N 132
LYS CE NZ sing N N 133
LYS CE HE2 sing N N 134
LYS CE HE3 sing N N 135
LYS NZ HZ1 sing N N 136
LYS NZ HZ2 sing N N 137
LYS NZ HZ3 sing N N 138
LYS OXT HXT sing N N 139
MET N CA sing N N 140
MET N H sing N N 141
MET N H2 sing N N 142
MET CA C sing N N 143
MET CA CB sing N N 144
MET CA HA sing N N 145
MET C O doub N N 146
MET C OXT sing N N 147
MET CB CG sing N N 148
MET CB HB2 sing N N 149
MET CB HB3 sing N N 150
MET CG SD sing N N 151
MET CG HG2 sing N N 152
MET CG HG3 sing N N 153
MET SD CE sing N N 154
MET CE HE1 sing N N 155
MET CE HE2 sing N N 156
MET CE HE3 sing N N 157
MET OXT HXT sing N N 158
MPD C1 C2 sing N N 159
MPD C1 H11 sing N N 160
MPD C1 H12 sing N N 161
MPD C1 H13 sing N N 162
MPD C2 O2 sing N N 163
MPD C2 CM sing N N 164
MPD C2 C3 sing N N 165
MPD O2 HO2 sing N N 166
MPD CM HM1 sing N N 167
MPD CM HM2 sing N N 168
MPD CM HM3 sing N N 169
MPD C3 C4 sing N N 170
MPD C3 H31 sing N N 171
MPD C3 H32 sing N N 172
MPD C4 O4 sing N N 173
MPD C4 C5 sing N N 174
MPD C4 H4 sing N N 175
MPD O4 HO4 sing N N 176
MPD C5 H51 sing N N 177
MPD C5 H52 sing N N 178
MPD C5 H53 sing N N 179
ORN N CA sing N N 180
ORN N H sing N N 181
ORN N H2 sing N N 182
ORN CA CB sing N N 183
ORN CA C sing N N 184
ORN CA HA sing N N 185
ORN CB CG sing N N 186
ORN CB HB2 sing N N 187
ORN CB HB3 sing N N 188
ORN CG CD sing N N 189
ORN CG HG2 sing N N 190
ORN CG HG3 sing N N 191
ORN CD NE sing N N 192
ORN CD HD2 sing N N 193
ORN CD HD3 sing N N 194
ORN NE HE1 sing N N 195
ORN NE HE2 sing N N 196
ORN C O doub N N 197
ORN C OXT sing N N 198
ORN OXT HXT sing N N 199
PHE N CA sing N N 200
PHE N H sing N N 201
PHE N H2 sing N N 202
PHE CA C sing N N 203
PHE CA CB sing N N 204
PHE CA HA sing N N 205
PHE C O doub N N 206
PHE C OXT sing N N 207
PHE CB CG sing N N 208
PHE CB HB2 sing N N 209
PHE CB HB3 sing N N 210
PHE CG CD1 doub Y N 211
PHE CG CD2 sing Y N 212
PHE CD1 CE1 sing Y N 213
PHE CD1 HD1 sing N N 214
PHE CD2 CE2 doub Y N 215
PHE CD2 HD2 sing N N 216
PHE CE1 CZ doub Y N 217
PHE CE1 HE1 sing N N 218
PHE CE2 CZ sing Y N 219
PHE CE2 HE2 sing N N 220
PHE CZ HZ sing N N 221
PHE OXT HXT sing N N 222
VAL N CA sing N N 223
VAL N H sing N N 224
VAL N H2 sing N N 225
VAL CA C sing N N 226
VAL CA CB sing N N 227
VAL CA HA sing N N 228
VAL C O doub N N 229
VAL C OXT sing N N 230
VAL CB CG1 sing N N 231
VAL CB CG2 sing N N 232
VAL CB HB sing N N 233
VAL CG1 HG11 sing N N 234
VAL CG1 HG12 sing N N 235
VAL CG1 HG13 sing N N 236
VAL CG2 HG21 sing N N 237
VAL CG2 HG22 sing N N 238
VAL CG2 HG23 sing N N 239
VAL OXT HXT sing N N 240
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name '(4S)-2-METHYL-2,4-PENTANEDIOL'
_pdbx_entity_nonpoly.comp_id MPD
#
loop_
_pdbx_reflns_twin.domain_id
_pdbx_reflns_twin.crystal_id
_pdbx_reflns_twin.diffrn_id
_pdbx_reflns_twin.type
_pdbx_reflns_twin.operator
_pdbx_reflns_twin.fraction
1 1 1 ? 'H, K, L' 0.503
2 1 1 ? 'L, -K, H' 0.497
#