HEADER PROTEIN BINDING 26-JUL-11 3T4N TITLE STRUCTURE OF THE REGULATORY FRAGMENT OF SACCHAROMYCES CEREVISIAE AMPK TITLE 2 IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON CATABOLITE-DEREPRESSING PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SNF1 PROTEIN KINASE SUBUNIT BETA-2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN SPM2, SNF1-INTERACTING PROTEIN 2; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: NUCLEAR PROTEIN SNF4; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: REGULATORY PROTEIN CAT3; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: SNF1, CAT1, CCR1, GLC2, PAS14, YDR477W, D8035.20; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 559292; SOURCE 13 STRAIN: ATCC 204508 / S288C; SOURCE 14 GENE: SIP2, SPM2, YGL208W, G1155; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 19 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 20 ORGANISM_TAXID: 559292; SOURCE 21 STRAIN: ATCC 204508 / S288C; SOURCE 22 GENE: SNF4, CAT3, YGL115W; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBS DOMAIN, NUCLEOTIDE BINDING, CYTOSOL, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR F.V.MAYER,R.HEATH,E.UNDERWOOD,M.J.SANDERS,D.CARMENA,R.MCCARTNEY, AUTHOR 2 F.C.LEIPER,B.XIAO,C.JING,P.A.WALKER,L.F.HAIRE,R.OGRODOWICZ, AUTHOR 3 S.R.MARTIN,M.C.SCHMDIT,S.J.GAMBLIN,D.CARLING REVDAT 3 28-FEB-24 3T4N 1 REMARK SEQADV REVDAT 2 23-NOV-11 3T4N 1 JRNL REVDAT 1 09-NOV-11 3T4N 0 JRNL AUTH F.V.MAYER,R.HEATH,E.UNDERWOOD,M.J.SANDERS,D.CARMENA, JRNL AUTH 2 R.R.MCCARTNEY,F.C.LEIPER,B.XIAO,C.JING,P.A.WALKER,L.F.HAIRE, JRNL AUTH 3 R.OGRODOWICZ,S.R.MARTIN,M.C.SCHMIDT,S.J.GAMBLIN,D.CARLING JRNL TITL ADP REGULATES SNF1, THE SACCHAROMYCES CEREVISIAE HOMOLOG OF JRNL TITL 2 AMP-ACTIVATED PROTEIN KINASE. JRNL REF CELL METAB V. 14 707 2011 JRNL REFN ISSN 1550-4131 JRNL PMID 22019086 JRNL DOI 10.1016/J.CMET.2011.09.009 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 35869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 249 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4453 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6066 ; 1.037 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 4.839 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;35.483 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 765 ;14.924 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.298 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 731 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3232 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2768 ; 0.569 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4509 ; 1.064 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 1.194 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1557 ; 2.111 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35869 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SUCCINIC ACID, 0.1M HEPES, 1% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.79450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.79450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.29950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 125.60700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.29950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 125.60700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.79450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.29950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 125.60700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.79450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.29950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 125.60700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 455 REMARK 465 PRO A 456 REMARK 465 MET A 457 REMARK 465 ASP A 458 REMARK 465 GLN A 459 REMARK 465 TYR A 460 REMARK 465 LYS A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 ASP A 464 REMARK 465 ASP A 551 REMARK 465 ILE A 552 REMARK 465 GLY A 553 REMARK 465 ASN A 554 REMARK 465 LYS A 555 REMARK 465 THR A 556 REMARK 465 ASN A 557 REMARK 465 THR A 558 REMARK 465 ASN A 559 REMARK 465 GLU A 560 REMARK 465 LYS A 561 REMARK 465 SER A 592 REMARK 465 TYR A 593 REMARK 465 GLY A 594 REMARK 465 ASP A 595 REMARK 465 ASP A 596 REMARK 465 THR A 597 REMARK 465 THR A 598 REMARK 465 VAL A 599 REMARK 465 SER A 600 REMARK 465 ASN A 601 REMARK 465 ILE A 602 REMARK 465 SER A 603 REMARK 465 GLU A 604 REMARK 465 ASP A 605 REMARK 465 GLU A 606 REMARK 465 MET A 607 REMARK 465 GLN A 631 REMARK 465 SER A 632 REMARK 465 ASN A 633 REMARK 465 ARG B 328 REMARK 465 GLN B 329 REMARK 465 GLN B 330 REMARK 465 SER B 331 REMARK 465 ASN B 332 REMARK 465 THR B 333 REMARK 465 ASP B 334 REMARK 465 SER B 414 REMARK 465 SER B 415 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 465 PRO C 4 REMARK 465 THR C 5 REMARK 465 GLN C 6 REMARK 465 ASP C 7 REMARK 465 ASP C 120 REMARK 465 GLN C 121 REMARK 465 LEU C 122 REMARK 465 ASP C 123 REMARK 465 ASN C 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 TYR B 323 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 327 CG OD1 OD2 REMARK 470 GLN B 361 CG CD OE1 NE2 REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 GLN C 17 CG CD OE1 NE2 REMARK 470 ARG C 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 52 CG CD CE NZ REMARK 470 LYS C 72 CG CD CE NZ REMARK 470 ARG C 75 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 100 CG CD OE1 OE2 REMARK 470 LYS C 104 CG CD CE NZ REMARK 470 ARG C 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 170 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 180 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 201 CG CD CE NZ REMARK 470 GLU C 229 CG CD OE1 OE2 REMARK 470 TYR C 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 292 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 575 -71.99 -84.40 REMARK 500 THR B 325 31.66 -93.70 REMARK 500 ASN B 366 29.53 44.97 REMARK 500 LEU B 370 128.20 -38.37 REMARK 500 LYS B 400 -110.95 46.42 REMARK 500 ILE B 412 -163.11 -118.21 REMARK 500 TYR C 251 -75.22 -45.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 324 DBREF 3T4N A 457 633 UNP P06782 SNF1_YEAST 457 633 DBREF 3T4N B 304 415 UNP P34164 SIP2_YEAST 304 415 DBREF 3T4N C 3 323 UNP P12904 SNF4_YEAST 2 322 SEQADV 3T4N GLY A 455 UNP P06782 EXPRESSION TAG SEQADV 3T4N PRO A 456 UNP P06782 EXPRESSION TAG SEQADV 3T4N MET B 303 UNP P34164 INITIATING METHIONINE SEQADV 3T4N MET C 1 UNP P12904 EXPRESSION TAG SEQADV 3T4N ALA C 2 UNP P12904 EXPRESSION TAG SEQRES 1 A 179 GLY PRO MET ASP GLN TYR LYS GLU GLU ASP SER THR VAL SEQRES 2 A 179 SER ILE LEU PRO THR SER LEU PRO GLN ILE HIS ARG ALA SEQRES 3 A 179 ASN MET LEU ALA GLN GLY SER PRO ALA ALA SER LYS ILE SEQRES 4 A 179 SER PRO LEU VAL THR LYS LYS SER LYS THR ARG TRP HIS SEQRES 5 A 179 PHE GLY ILE ARG SER ARG SER TYR PRO LEU ASP VAL MET SEQRES 6 A 179 GLY GLU ILE TYR ILE ALA LEU LYS ASN LEU GLY ALA GLU SEQRES 7 A 179 TRP ALA LYS PRO SER GLU GLU ASP LEU TRP THR ILE LYS SEQRES 8 A 179 LEU ARG TRP LYS TYR ASP ILE GLY ASN LYS THR ASN THR SEQRES 9 A 179 ASN GLU LYS ILE PRO ASP LEU MET LYS MET VAL ILE GLN SEQRES 10 A 179 LEU PHE GLN ILE GLU THR ASN ASN TYR LEU VAL ASP PHE SEQRES 11 A 179 LYS PHE ASP GLY TRP GLU SER SER TYR GLY ASP ASP THR SEQRES 12 A 179 THR VAL SER ASN ILE SER GLU ASP GLU MET SER THR PHE SEQRES 13 A 179 SER ALA TYR PRO PHE LEU HIS LEU THR THR LYS LEU ILE SEQRES 14 A 179 MET GLU LEU ALA VAL ASN SER GLN SER ASN SEQRES 1 B 113 MET GLU TYR THR THR ASP ILE PRO ALA VAL PHE THR ASP SEQRES 2 B 113 PRO SER VAL MET GLU ARG TYR TYR TYR THR LEU ASP ARG SEQRES 3 B 113 GLN GLN SER ASN THR ASP THR SER TRP LEU THR PRO PRO SEQRES 4 B 113 GLN LEU PRO PRO GLN LEU GLU ASN VAL ILE LEU ASN LYS SEQRES 5 B 113 TYR TYR ALA THR GLN ASP GLN PHE ASN GLU ASN ASN SER SEQRES 6 B 113 GLY ALA LEU PRO ILE PRO ASN HIS VAL VAL LEU ASN HIS SEQRES 7 B 113 LEU VAL THR SER SER ILE LYS HIS ASN THR LEU CYS VAL SEQRES 8 B 113 ALA SER ILE VAL ARG TYR LYS GLN LYS TYR VAL THR GLN SEQRES 9 B 113 ILE LEU TYR THR PRO ILE GLU SER SER SEQRES 1 C 323 MET ALA LYS PRO THR GLN ASP SER GLN GLU LYS VAL SER SEQRES 2 C 323 ILE GLU GLN GLN LEU ALA VAL GLU SER ILE ARG LYS PHE SEQRES 3 C 323 LEU ASN SER LYS THR SER TYR ASP VAL LEU PRO VAL SER SEQRES 4 C 323 TYR ARG LEU ILE VAL LEU ASP THR SER LEU LEU VAL LYS SEQRES 5 C 323 LYS SER LEU ASN VAL LEU LEU GLN ASN SER ILE VAL SER SEQRES 6 C 323 ALA PRO LEU TRP ASP SER LYS THR SER ARG PHE ALA GLY SEQRES 7 C 323 LEU LEU THR THR THR ASP PHE ILE ASN VAL ILE GLN TYR SEQRES 8 C 323 TYR PHE SER ASN PRO ASP LYS PHE GLU LEU VAL ASP LYS SEQRES 9 C 323 LEU GLN LEU ASP GLY LEU LYS ASP ILE GLU ARG ALA LEU SEQRES 10 C 323 GLY VAL ASP GLN LEU ASP THR ALA SER ILE HIS PRO SER SEQRES 11 C 323 ARG PRO LEU PHE GLU ALA CYS LEU LYS MET LEU GLU SER SEQRES 12 C 323 ARG SER GLY ARG ILE PRO LEU ILE ASP GLN ASP GLU GLU SEQRES 13 C 323 THR HIS ARG GLU ILE VAL VAL SER VAL LEU THR GLN TYR SEQRES 14 C 323 ARG ILE LEU LYS PHE VAL ALA LEU ASN CYS ARG GLU THR SEQRES 15 C 323 HIS PHE LEU LYS ILE PRO ILE GLY ASP LEU ASN ILE ILE SEQRES 16 C 323 THR GLN ASP ASN MET LYS SER CYS GLN MET THR THR PRO SEQRES 17 C 323 VAL ILE ASP VAL ILE GLN MET LEU THR GLN GLY ARG VAL SEQRES 18 C 323 SER SER VAL PRO ILE ILE ASP GLU ASN GLY TYR LEU ILE SEQRES 19 C 323 ASN VAL TYR GLU ALA TYR ASP VAL LEU GLY LEU ILE LYS SEQRES 20 C 323 GLY GLY ILE TYR ASN ASP LEU SER LEU SER VAL GLY GLU SEQRES 21 C 323 ALA LEU MET ARG ARG SER ASP ASP PHE GLU GLY VAL TYR SEQRES 22 C 323 THR CYS THR LYS ASN ASP LYS LEU SER THR ILE MET ASP SEQRES 23 C 323 ASN ILE ARG LYS ALA ARG VAL HIS ARG PHE PHE VAL VAL SEQRES 24 C 323 ASP ASP VAL GLY ARG LEU VAL GLY VAL LEU THR LEU SER SEQRES 25 C 323 ASP ILE LEU LYS TYR ILE LEU LEU GLY SER ASN HET ADP C 324 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *333(H2 O) HELIX 1 1 PRO A 471 SER A 473 5 3 HELIX 2 2 LEU A 474 GLY A 486 1 13 HELIX 3 3 PRO A 488 ILE A 493 1 6 HELIX 4 4 TYR A 514 GLY A 530 1 17 HELIX 5 5 SER A 537 LEU A 541 5 5 HELIX 6 6 ALA A 612 ASN A 629 1 18 HELIX 7 7 PRO B 310 THR B 314 5 5 HELIX 8 8 ASP B 315 THR B 325 1 11 HELIX 9 9 THR B 335 THR B 339 5 5 HELIX 10 10 PRO B 344 LEU B 347 5 4 HELIX 11 11 GLU B 348 ASN B 366 1 19 HELIX 12 12 ASN B 374 LEU B 378 5 5 HELIX 13 13 SER C 8 LYS C 30 1 23 HELIX 14 14 THR C 31 LEU C 36 1 6 HELIX 15 15 LEU C 50 ASN C 61 1 12 HELIX 16 16 THR C 81 ASN C 95 1 15 HELIX 17 17 PRO C 96 LEU C 105 5 10 HELIX 18 18 GLN C 106 LEU C 117 1 12 HELIX 19 19 PRO C 132 ARG C 144 1 13 HELIX 20 20 GLN C 168 CYS C 179 1 12 HELIX 21 21 ARG C 180 LEU C 185 5 6 HELIX 22 22 PRO C 188 LEU C 192 5 5 HELIX 23 23 PRO C 208 ARG C 220 1 13 HELIX 24 24 TYR C 240 GLY C 248 1 9 HELIX 25 25 GLY C 249 LEU C 254 1 6 HELIX 26 26 SER C 257 LEU C 262 1 6 HELIX 27 27 MET C 263 ARG C 265 5 3 HELIX 28 28 LYS C 280 ALA C 291 1 12 HELIX 29 29 LEU C 311 GLY C 321 1 11 SHEET 1 A 4 SER A 468 ILE A 469 0 SHEET 2 A 4 TYR C 273 CYS C 275 -1 O THR C 274 N SER A 468 SHEET 3 A 4 ARG C 295 VAL C 299 1 O PHE C 297 N TYR C 273 SHEET 4 A 4 LEU C 305 THR C 310 -1 O LEU C 309 N PHE C 296 SHEET 1 B 2 HIS A 506 PHE A 507 0 SHEET 2 B 2 VAL B 382 THR B 383 -1 O THR B 383 N HIS A 506 SHEET 1 C 6 ILE A 509 SER A 511 0 SHEET 2 C 6 ASN A 579 GLU A 590 -1 O VAL A 582 N ILE A 509 SHEET 3 C 6 LEU A 565 GLU A 576 -1 N LYS A 567 O GLY A 588 SHEET 4 C 6 THR A 543 TRP A 548 -1 N TRP A 548 O MET A 566 SHEET 5 C 6 GLU A 532 ALA A 534 -1 N GLU A 532 O ARG A 547 SHEET 6 C 6 TYR B 305 THR B 306 -1 O THR B 306 N TRP A 533 SHEET 1 D 5 THR B 390 TYR B 399 0 SHEET 2 D 5 LYS B 402 PRO B 411 -1 O LYS B 402 N TYR B 399 SHEET 3 D 5 SER C 39 ASP C 46 1 O LEU C 42 N ILE B 407 SHEET 4 D 5 ALA C 66 ASP C 70 1 O TRP C 69 N LEU C 45 SHEET 5 D 5 ARG C 75 LEU C 80 -1 O LEU C 80 N ALA C 66 SHEET 1 E 2 ARG C 147 GLN C 153 0 SHEET 2 E 2 GLU C 160 THR C 167 -1 O SER C 164 N LEU C 150 SHEET 1 F 2 SER C 223 ILE C 227 0 SHEET 2 F 2 LEU C 233 GLU C 238 -1 O ASN C 235 N ILE C 226 SITE 1 AC1 16 GLN C 168 THR C 196 ASN C 199 MET C 200 SITE 2 AC1 16 LYS C 201 VAL C 221 SER C 222 SER C 223 SITE 3 AC1 16 PRO C 225 THR C 310 SER C 312 ASP C 313 SITE 4 AC1 16 HOH C 394 HOH C 397 HOH C 406 HOH C 417 CRYST1 88.599 251.214 79.589 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012565 0.00000