HEADER TRANSFERASE 26-JUL-11 3T54 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN DIPHOSPHOINOSITOL TITLE 2 PENTAKISPHOSPHATE KINASE 2 (PPIP5K2) IN COMPLEX WITH ATP AND CADMIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL PYROPHOSPHATE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 2.7.4.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPIP5K2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ARCTIC EXPRESS (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST566 KEYWDS ATP-GRASP FOLD, INOSITOL PYROPHOSPHATE KINASE, PHOSPHORYL KEYWDS 2 TRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,J.FALCK,T.M.T.HALL,S.B.SHEARS REVDAT 4 28-FEB-24 3T54 1 REMARK SEQADV LINK REVDAT 3 11-JAN-12 3T54 1 JRNL REVDAT 2 14-DEC-11 3T54 1 JRNL REVDAT 1 07-DEC-11 3T54 0 JRNL AUTH H.WANG,J.R.FALCK,T.M.HALL,S.B.SHEARS JRNL TITL STRUCTURAL BASIS FOR AN INOSITOL PYROPHOSPHATE KINASE JRNL TITL 2 SURMOUNTING PHOSPHATE CROWDING. JRNL REF NAT.CHEM.BIOL. V. 8 111 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 22119861 JRNL DOI 10.1038/NCHEMBIO.733 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 30773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.147 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2688 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3654 ; 1.233 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.386 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;33.207 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;12.772 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ; 9.214 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2048 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1622 ; 0.760 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2644 ; 1.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 2.045 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1009 ; 3.515 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 31.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46600 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 3350, 20 MM MGCL2, 0.1 M REMARK 280 HEPES, 1 MM ATP, 2 MM CDCL2, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.97850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.65350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.29850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 20.65350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.97850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.29850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 PHE A 35 REMARK 465 THR A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 GLU A 41 REMARK 465 ARG A 42 REMARK 465 PRO A 361 REMARK 465 LEU A 362 REMARK 465 GLU A 363 REMARK 465 ALA A 364 REMARK 465 GLU A 365 REMARK 465 ASP A 366 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 320 34.09 -145.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 604 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 HOH A 423 O 92.2 REMARK 620 3 HOH A 426 O 117.6 67.0 REMARK 620 4 HOH A 619 O 102.5 156.7 90.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 605 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 164 SG REMARK 620 2 HOH A 623 O 95.1 REMARK 620 3 HOH A 629 O 166.9 94.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 606 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 187 NZ REMARK 620 2 GLU A 237 OE1 101.4 REMARK 620 3 CYS A 320 SG 125.9 110.0 REMARK 620 4 ATP A 401 N7 103.9 80.1 123.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 603 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 251 OG1 REMARK 620 2 CYS A 298 SG 100.7 REMARK 620 3 GLN A 303 O 159.4 99.1 REMARK 620 4 THR A 304 O 90.4 97.4 81.6 REMARK 620 5 CYS A 306 SG 82.2 129.0 89.6 133.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 602 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 309 OD2 REMARK 620 2 ASP A 321 OD2 97.7 REMARK 620 3 ATP A 401 O1G 153.7 85.7 REMARK 620 4 ATP A 401 O2A 81.4 93.2 124.6 REMARK 620 5 HOH A 424 O 87.8 173.8 88.1 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 601 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD1 REMARK 620 2 ASP A 321 OD2 54.1 REMARK 620 3 ASN A 323 OD1 85.8 86.2 REMARK 620 4 ATP A 401 O3G 149.1 95.0 92.9 REMARK 620 5 ATP A 401 O2B 86.7 81.7 167.8 88.7 REMARK 620 6 HOH A 425 O 102.1 154.9 100.9 108.5 90.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T7A RELATED DB: PDB REMARK 900 RELATED ID: 3T99 RELATED DB: PDB REMARK 900 RELATED ID: 3T9A RELATED DB: PDB REMARK 900 RELATED ID: 3T9B RELATED DB: PDB REMARK 900 RELATED ID: 3T9C RELATED DB: PDB REMARK 900 RELATED ID: 3T9D RELATED DB: PDB REMARK 900 RELATED ID: 3T9E RELATED DB: PDB REMARK 900 RELATED ID: 3T9F RELATED DB: PDB DBREF 3T54 A 37 366 UNP O43314 VIP2_HUMAN 37 366 SEQADV 3T54 GLY A 33 UNP O43314 EXPRESSION TAG SEQADV 3T54 SER A 34 UNP O43314 EXPRESSION TAG SEQADV 3T54 PHE A 35 UNP O43314 EXPRESSION TAG SEQADV 3T54 THR A 36 UNP O43314 EXPRESSION TAG SEQRES 1 A 334 GLY SER PHE THR ASP SER PRO PRO GLU ARG GLN ILE VAL SEQRES 2 A 334 VAL GLY ILE CYS SER MET ALA LYS LYS SER LYS SER LYS SEQRES 3 A 334 PRO MET LYS GLU ILE LEU GLU ARG ILE SER LEU PHE LYS SEQRES 4 A 334 TYR ILE THR VAL VAL VAL PHE GLU GLU GLU VAL ILE LEU SEQRES 5 A 334 ASN GLU PRO VAL GLU ASN TRP PRO LEU CYS ASP CYS LEU SEQRES 6 A 334 ILE SER PHE HIS SER LYS GLY PHE PRO LEU ASP LYS ALA SEQRES 7 A 334 VAL ALA TYR ALA LYS LEU ARG ASN PRO PHE VAL ILE ASN SEQRES 8 A 334 ASP LEU ASN MET GLN TYR LEU ILE GLN ASP ARG ARG GLU SEQRES 9 A 334 VAL TYR SER ILE LEU GLN ALA GLU GLY ILE LEU LEU PRO SEQRES 10 A 334 ARG TYR ALA ILE LEU ASN ARG ASP PRO ASN ASN PRO LYS SEQRES 11 A 334 GLU CYS ASN LEU ILE GLU GLY GLU ASP HIS VAL GLU VAL SEQRES 12 A 334 ASN GLY GLU VAL PHE GLN LYS PRO PHE VAL GLU LYS PRO SEQRES 13 A 334 VAL SER ALA GLU ASP HIS ASN VAL TYR ILE TYR TYR PRO SEQRES 14 A 334 THR SER ALA GLY GLY GLY SER GLN ARG LEU PHE ARG LYS SEQRES 15 A 334 ILE GLY SER ARG SER SER VAL TYR SER PRO GLU SER ASN SEQRES 16 A 334 VAL ARG LYS THR GLY SER TYR ILE TYR GLU GLU PHE MET SEQRES 17 A 334 PRO THR ASP GLY THR ASP VAL LYS VAL TYR THR VAL GLY SEQRES 18 A 334 PRO ASP TYR ALA HIS ALA GLU ALA ARG LYS SER PRO ALA SEQRES 19 A 334 LEU ASP GLY LYS VAL GLU ARG ASP SER GLU GLY LYS GLU SEQRES 20 A 334 VAL ARG TYR PRO VAL ILE LEU ASN ALA ARG GLU LYS LEU SEQRES 21 A 334 ILE ALA TRP LYS VAL CYS LEU ALA PHE LYS GLN THR VAL SEQRES 22 A 334 CYS GLY PHE ASP LEU LEU ARG ALA ASN GLY GLN SER TYR SEQRES 23 A 334 VAL CYS ASP VAL ASN GLY PHE SER PHE VAL LYS ASN SER SEQRES 24 A 334 MET LYS TYR TYR ASP ASP CYS ALA LYS ILE LEU GLY ASN SEQRES 25 A 334 ILE VAL MET ARG GLU LEU ALA PRO GLN PHE HIS ILE PRO SEQRES 26 A 334 TRP SER ILE PRO LEU GLU ALA GLU ASP HET ATP A 401 31 HET CD A 601 1 HET CD A 602 1 HET CD A 603 1 HET CD A 604 1 HET CD A 605 1 HET CD A 606 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CD CADMIUM ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 CD 6(CD 2+) FORMUL 9 HOH *349(H2 O) HELIX 1 1 MET A 51 LYS A 56 1 6 HELIX 2 2 SER A 57 SER A 68 1 12 HELIX 3 3 GLU A 79 GLU A 86 1 8 HELIX 4 4 PRO A 87 TRP A 91 5 5 HELIX 5 5 PRO A 106 ASN A 118 1 13 HELIX 6 6 ASN A 126 ILE A 131 1 6 HELIX 7 7 ASP A 133 GLU A 144 1 12 HELIX 8 8 PRO A 201 GLY A 205 5 5 HELIX 9 9 ASN A 287 LYS A 302 1 16 HELIX 10 10 SER A 331 ALA A 351 1 21 SHEET 1 A 4 ILE A 73 VAL A 77 0 SHEET 2 A 4 ILE A 44 CYS A 49 1 N VAL A 46 O THR A 74 SHEET 3 A 4 CYS A 96 SER A 99 1 O CYS A 96 N GLY A 47 SHEET 4 A 4 PHE A 120 VAL A 121 1 O PHE A 120 N LEU A 97 SHEET 1 B 6 TYR A 151 LEU A 154 0 SHEET 2 B 6 TYR A 234 GLU A 238 -1 O TYR A 234 N LEU A 154 SHEET 3 B 6 PHE A 184 PRO A 188 -1 N VAL A 185 O GLU A 237 SHEET 4 B 6 TYR A 197 TYR A 199 -1 O TYR A 197 N GLU A 186 SHEET 5 B 6 SER A 208 ILE A 215 -1 O GLN A 209 N ILE A 198 SHEET 6 B 6 ARG A 218 SER A 223 -1 O SER A 223 N SER A 208 SHEET 1 C 3 LEU A 166 GLU A 168 0 SHEET 2 C 3 HIS A 172 VAL A 175 -1 O GLU A 174 N ILE A 167 SHEET 3 C 3 GLU A 178 GLN A 181 -1 O GLU A 178 N VAL A 175 SHEET 1 D 5 TYR A 282 PRO A 283 0 SHEET 2 D 5 ALA A 257 LYS A 263 -1 N ALA A 261 O TYR A 282 SHEET 3 D 5 THR A 245 VAL A 252 -1 N LYS A 248 O GLU A 260 SHEET 4 D 5 VAL A 305 ALA A 313 -1 O PHE A 308 N VAL A 249 SHEET 5 D 5 GLN A 316 TYR A 318 -1 O TYR A 318 N LEU A 311 SHEET 1 E 5 TYR A 282 PRO A 283 0 SHEET 2 E 5 ALA A 257 LYS A 263 -1 N ALA A 261 O TYR A 282 SHEET 3 E 5 THR A 245 VAL A 252 -1 N LYS A 248 O GLU A 260 SHEET 4 E 5 VAL A 305 ALA A 313 -1 O PHE A 308 N VAL A 249 SHEET 5 E 5 VAL A 322 GLY A 324 -1 O ASN A 323 N GLY A 307 LINK SG CYS A 164 CD CD A 604 1555 1555 2.51 LINK SG CYS A 164 CD CD A 605 1555 1555 2.63 LINK NZ LYS A 187 CD CD A 606 1555 1555 2.08 LINK OE1 GLU A 237 CD CD A 606 1555 1555 2.13 LINK OG1 THR A 251 CD CD A 603 1555 1555 2.33 LINK SG CYS A 298 CD CD A 603 1555 1555 2.51 LINK O GLN A 303 CD CD A 603 1555 1555 2.27 LINK O THR A 304 CD CD A 603 1555 1555 2.45 LINK SG CYS A 306 CD CD A 603 1555 1555 2.38 LINK OD2AASP A 309 CD CD A 602 1555 1555 2.59 LINK SG CYS A 320 CD CD A 606 1555 1555 2.29 LINK OD1 ASP A 321 CD CD A 601 1555 1555 2.34 LINK OD2 ASP A 321 CD CD A 601 1555 1555 2.47 LINK OD2 ASP A 321 CD CD A 602 1555 1555 2.25 LINK OD1 ASN A 323 CD CD A 601 1555 1555 2.12 LINK O3G ATP A 401 CD CD A 601 1555 1555 1.94 LINK O2B ATP A 401 CD CD A 601 1555 1555 2.15 LINK O1G ATP A 401 CD CD A 602 1555 1555 2.08 LINK O2A ATP A 401 CD CD A 602 1555 1555 2.10 LINK N7 ATP A 401 CD CD A 606 1555 1555 2.41 LINK O HOH A 423 CD CD A 604 1555 1555 1.94 LINK O HOH A 424 CD CD A 602 1555 1555 2.11 LINK O HOH A 425 CD CD A 601 1555 1555 1.91 LINK O HOH A 426 CD CD A 604 1555 1555 2.19 LINK CD CD A 604 O HOH A 619 1555 1555 2.67 LINK CD CD A 605 O HOH A 623 1555 1555 2.21 LINK CD CD A 605 O HOH A 629 1555 1555 2.27 CISPEP 1 LYS A 182 PRO A 183 0 6.18 SITE 1 AC1 26 ARG A 134 PRO A 149 LYS A 187 HIS A 194 SITE 2 AC1 26 LEU A 211 ARG A 213 GLU A 237 GLU A 238 SITE 3 AC1 26 PHE A 239 MET A 240 ASP A 246 LYS A 248 SITE 4 AC1 26 SER A 264 ASP A 309 LEU A 311 ASP A 321 SITE 5 AC1 26 ASN A 323 HOH A 369 HOH A 415 HOH A 424 SITE 6 AC1 26 HOH A 425 HOH A 497 HOH A 550 CD A 601 SITE 7 AC1 26 CD A 602 CD A 606 SITE 1 AC2 4 ASP A 321 ASN A 323 ATP A 401 HOH A 425 SITE 1 AC3 4 ASP A 309 ASP A 321 ATP A 401 HOH A 424 SITE 1 AC4 5 THR A 251 CYS A 298 GLN A 303 THR A 304 SITE 2 AC4 5 CYS A 306 SITE 1 AC5 5 GLU A 62 CYS A 164 HOH A 423 HOH A 426 SITE 2 AC5 5 HOH A 619 SITE 1 AC6 5 CYS A 164 HOH A 422 HOH A 618 HOH A 623 SITE 2 AC6 5 HOH A 629 SITE 1 AC7 4 LYS A 187 GLU A 237 CYS A 320 ATP A 401 CRYST1 89.957 110.597 41.307 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024209 0.00000