HEADER IMMUNE SYSTEM 28-JUL-11 3T65 TITLE S25-2- A(2-8)KDO DISACCHARIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: S25-2 FAB (IGG1K) HEAVY CHAIN; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S25-2 FAB (IGG1K) LIGHT CHAIN; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIGEN-BINDING FRAGMENT, FAB, ANTI-CARBOHYDRATE, ANTI-LPS, ANTIBODY, KEYWDS 2 IMMUNOGLOBULIN, KDO, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE,S.V.EVANS REVDAT 3 30-OCT-24 3T65 1 HETSYN REVDAT 2 29-JUL-20 3T65 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 17-AUG-11 3T65 0 SPRSDE 17-AUG-11 3T65 1Q9R JRNL AUTH H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE, JRNL AUTH 2 S.V.EVANS JRNL TITL GERMLINE ANTIBODY RECOGNITION OF DISTINCT CARBOHYDRATE JRNL TITL 2 EPITOPES. JRNL REF NAT.STRUCT.BIOL. V. 10 1019 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14625588 JRNL DOI 10.1038/NSB1014 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 82096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 8262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7770 - 4.4878 0.96 2773 294 0.1932 0.1944 REMARK 3 2 4.4878 - 3.5689 0.63 1709 200 0.1693 0.1879 REMARK 3 3 3.5689 - 3.1198 0.99 2674 324 0.1893 0.2037 REMARK 3 4 3.1198 - 2.8354 1.00 2640 333 0.1984 0.2213 REMARK 3 5 2.8354 - 2.6327 1.00 2658 317 0.1982 0.2069 REMARK 3 6 2.6327 - 2.4778 1.00 2670 298 0.1984 0.2305 REMARK 3 7 2.4778 - 2.3539 0.99 2648 286 0.1924 0.2165 REMARK 3 8 2.3539 - 2.2516 0.76 2013 236 0.1932 0.2238 REMARK 3 9 2.2516 - 2.1650 0.69 1838 182 0.1964 0.2145 REMARK 3 10 2.1650 - 2.0904 0.99 2617 281 0.1833 0.2031 REMARK 3 11 2.0904 - 2.0251 0.98 2637 267 0.1815 0.2122 REMARK 3 12 2.0251 - 1.9673 0.99 2616 296 0.1893 0.1971 REMARK 3 13 1.9673 - 1.9155 0.87 2258 266 0.2309 0.2200 REMARK 3 14 1.9155 - 1.8688 0.79 2092 244 0.2222 0.2383 REMARK 3 15 1.8688 - 1.8264 0.97 2593 253 0.1774 0.1983 REMARK 3 16 1.8264 - 1.7875 0.98 2591 290 0.1798 0.1982 REMARK 3 17 1.7875 - 1.7518 0.98 2584 275 0.1862 0.2269 REMARK 3 18 1.7518 - 1.7188 0.98 2562 287 0.1792 0.1934 REMARK 3 19 1.7188 - 1.6881 0.98 2575 283 0.1873 0.2286 REMARK 3 20 1.6881 - 1.6595 0.97 2560 259 0.1829 0.2008 REMARK 3 21 1.6595 - 1.6327 0.97 2501 306 0.1862 0.2171 REMARK 3 22 1.6327 - 1.6076 0.97 2620 244 0.1859 0.2341 REMARK 3 23 1.6076 - 1.5840 0.97 2471 326 0.1869 0.2152 REMARK 3 24 1.5840 - 1.5617 0.96 2573 264 0.1851 0.2145 REMARK 3 25 1.5617 - 1.5406 0.96 2485 297 0.1943 0.2266 REMARK 3 26 1.5406 - 1.5206 0.92 2425 268 0.2179 0.2442 REMARK 3 27 1.5206 - 1.5016 0.92 2399 283 0.2200 0.2495 REMARK 3 28 1.5016 - 1.4835 0.94 2425 274 0.2121 0.2481 REMARK 3 29 1.4835 - 1.4663 0.83 2183 238 0.2638 0.2687 REMARK 3 30 1.4663 - 1.4498 0.93 2444 291 0.2164 0.2454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 40.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.46950 REMARK 3 B22 (A**2) : -0.69050 REMARK 3 B33 (A**2) : -1.77900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3524 REMARK 3 ANGLE : 1.146 4785 REMARK 3 CHIRALITY : 0.070 539 REMARK 3 PLANARITY : 0.005 606 REMARK 3 DIHEDRAL : 12.291 1262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.15 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82096 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 19.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KDO DISACCHARIDE, MAGNESIUM CHLORIDE, REMARK 280 ZINC CHLORIDE, ETHYLENE GLYCOL, GLYCEROL, PEG 4000, TRIS, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 261 O HOH B 299 1.80 REMARK 500 O HOH A 614 O HOH A 717 1.83 REMARK 500 O HOH A 387 O HOH A 627 1.85 REMARK 500 O HOH B 419 O HOH B 732 1.86 REMARK 500 OE1 GLU B 1 O HOH B 659 1.86 REMARK 500 OE1 GLN A 79 O HOH A 576 1.87 REMARK 500 O HOH B 563 O HOH B 632 1.88 REMARK 500 O8 KDO C 2 O HOH B 574 1.97 REMARK 500 O ALA B 128 O HOH B 543 1.97 REMARK 500 O HOH B 478 O HOH B 704 1.98 REMARK 500 O HOH B 342 O HOH B 408 1.98 REMARK 500 O HOH B 583 O HOH B 629 1.99 REMARK 500 SG CYS A 213 O HOH A 658 1.99 REMARK 500 O HOH A 352 O HOH A 532 2.00 REMARK 500 SG CYS A 133 O HOH A 473 2.03 REMARK 500 O HOH A 388 O HOH A 500 2.04 REMARK 500 O HOH B 216 O HOH B 382 2.06 REMARK 500 O HOH B 617 O HOH A 432 2.06 REMARK 500 NZ LYS A 45 O HOH A 498 2.08 REMARK 500 O HOH B 424 O HOH B 425 2.12 REMARK 500 O HOH A 330 O HOH A 631 2.12 REMARK 500 O HOH A 540 O HOH A 718 2.12 REMARK 500 O HOH B 249 O HOH B 525 2.14 REMARK 500 O GLN B 129 O HOH B 523 2.14 REMARK 500 O HOH A 381 O HOH A 640 2.14 REMARK 500 O HOH A 376 O HOH A 624 2.15 REMARK 500 O HOH B 697 O HOH B 720 2.16 REMARK 500 O HOH A 369 O HOH A 688 2.16 REMARK 500 O HOH B 490 O HOH A 397 2.16 REMARK 500 O HOH A 262 O HOH A 434 2.18 REMARK 500 O HOH B 618 O HOH B 670 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 211 O HOH A 493 2464 1.65 REMARK 500 OD2 ASP A 150 O HOH B 408 2564 1.91 REMARK 500 O HOH B 574 O HOH A 383 2565 1.99 REMARK 500 ND1 HIS A 188 O HOH B 408 2564 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 193 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 95 -148.45 -120.41 REMARK 500 TYR B 99 -69.25 -123.90 REMARK 500 SER B 126 36.81 -98.70 REMARK 500 GLN B 129 -32.95 70.28 REMARK 500 THR B 130 22.39 -71.82 REMARK 500 ASN B 131 30.85 -87.41 REMARK 500 SER B 132 -67.33 73.79 REMARK 500 ALA A 51 -40.31 67.61 REMARK 500 LEU A 94 -142.04 51.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 56 OE2 REMARK 620 2 HOH B 277 O 96.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 HOH A 371 O 82.4 REMARK 620 3 HOH A 400 O 174.2 102.4 REMARK 620 4 HOH A 470 O 77.1 122.5 97.4 REMARK 620 N 1 2 3 DBREF 3T65 B 1 211 PDB 3T65 3T65 1 211 DBREF 3T65 A 1 213 PDB 3T65 3T65 1 213 SEQRES 1 B 222 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 222 SER GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 222 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 222 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 222 ASN LYS ALA ASN GLY TYR THR THR GLU TYR SER PRO SER SEQRES 6 B 222 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 222 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 222 ASP SER ALA THR TYR TYR CYS ALA ARG ASP HIS ASP GLY SEQRES 9 B 222 TYR TYR GLU ARG PHE SER TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 222 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 222 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 222 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 222 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 222 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 222 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 222 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 222 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 222 ARG SEQRES 1 A 219 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE THR SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS HET KDA C 1 19 HET KDO C 2 15 HET MG B 305 1 HET ZN B 306 1 HETNAM KDA PROP-2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2- HETNAM 2 KDA ULOPYRANOSIDONIC ACID HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETSYN KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL; PROP- HETSYN 2 KDA 2-EN-1-YL 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 3 KDA PROP-2-EN-1-YL 3-DEOXY-D-MANNO-OCT-2-ULOSIDONIC ACID; HETSYN 4 KDA PROP-2-EN-1-YL 3-DEOXY-MANNO-OCT-2-ULOSIDONIC ACID HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO C8 H14 O8 FORMUL 4 MG MG 2+ FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *736(H2 O) HELIX 1 1 THR B 28 TYR B 32 5 5 HELIX 2 2 ASN B 52A GLY B 52E 5 5 HELIX 3 3 ARG B 83 SER B 87 5 5 HELIX 4 4 SER B 154 SER B 156 5 3 HELIX 5 5 PRO B 198 SER B 201 5 4 HELIX 6 6 GLN A 79 LEU A 83 5 5 HELIX 7 7 SER A 120 THR A 125 1 6 HELIX 8 8 LYS A 182 GLU A 186 1 5 HELIX 9 9 ASN A 211 CYS A 213 5 3 SHEET 1 A 4 LYS B 3 SER B 7 0 SHEET 2 A 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 A 4 ILE B 75 MET B 80 -1 O LEU B 78 N LEU B 20 SHEET 4 A 4 PHE B 65 ASP B 70 -1 N THR B 66 O GLN B 79 SHEET 1 B 6 LEU B 11 VAL B 12 0 SHEET 2 B 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 B 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 107 SHEET 4 B 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 B 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 B 6 THR B 55 TYR B 57 -1 O GLU B 56 N PHE B 50 SHEET 1 C 4 SER B 118 LEU B 122 0 SHEET 2 C 4 MET B 133 TYR B 143 -1 O LEU B 139 N TYR B 120 SHEET 3 C 4 LEU B 172 PRO B 182 -1 O TYR B 173 N TYR B 143 SHEET 4 C 4 VAL B 161 GLN B 169 -1 N HIS B 162 O SER B 178 SHEET 1 D 3 THR B 149 TRP B 152 0 SHEET 2 D 3 THR B 192 HIS B 197 -1 O ASN B 194 N THR B 151 SHEET 3 D 3 THR B 202 LYS B 207 -1 O LYS B 206 N CYS B 193 SHEET 1 E 4 MET A 4 SER A 7 0 SHEET 2 E 4 VAL A 19 SER A 25 -1 O LYS A 24 N SER A 5 SHEET 3 E 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 E 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 F 6 SER A 10 SER A 14 0 SHEET 2 F 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 F 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 F 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 F 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 F 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 G 4 SER A 10 SER A 14 0 SHEET 2 G 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 G 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 G 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 H 2 LEU A 30 ASN A 30A 0 SHEET 2 H 2 LYS A 30F ASN A 31 -1 O LYS A 30F N ASN A 30A SHEET 1 I 4 THR A 113 PHE A 117 0 SHEET 2 I 4 GLY A 128 PHE A 138 -1 O ASN A 136 N THR A 113 SHEET 3 I 4 TYR A 172 THR A 181 -1 O MET A 174 N LEU A 135 SHEET 4 I 4 VAL A 158 TRP A 162 -1 N SER A 161 O SER A 175 SHEET 1 J 4 SER A 152 ARG A 154 0 SHEET 2 J 4 ASN A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 J 4 SER A 190 THR A 196 -1 O GLU A 194 N LYS A 146 SHEET 4 J 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SSBOND 1 CYS B 22 CYS B 92 1555 1555 2.05 SSBOND 2 CYS B 138 CYS B 193 1555 1555 2.02 SSBOND 3 CYS A 23 CYS A 88 1555 1555 2.08 SSBOND 4 CYS A 133 CYS A 193 1555 1555 2.04 LINK O8 KDA C 1 C2 KDO C 2 1555 1555 1.41 LINK OE2 GLU B 56 ZN ZN B 306 1555 1555 1.95 LINK O HOH B 277 ZN ZN B 306 1555 1555 2.20 LINK MG MG B 305 OD1 ASN A 137 1555 1555 2.26 LINK MG MG B 305 O HOH A 371 1555 1555 2.81 LINK MG MG B 305 O HOH A 400 1555 1555 2.21 LINK MG MG B 305 O HOH A 470 1555 1555 2.08 CISPEP 1 PHE B 144 PRO B 145 0 -5.26 CISPEP 2 GLU B 146 PRO B 147 0 -0.83 CISPEP 3 TRP B 186 PRO B 187 0 6.22 CISPEP 4 SER A 7 PRO A 8 0 -6.05 CISPEP 5 TYR A 139 PRO A 140 0 2.67 CRYST1 45.900 81.600 131.500 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007605 0.00000