HEADER HYDROLASE 28-JUL-11 3T68 OBSLTE 23-APR-14 3T68 4ONW TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DAPE PROTEIN FROM TITLE 2 V.CHOLEREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: SDAP DESUCCINYLASE, N-SUCCINYL-LL-2,6-DIAMINOHEPTANEDIOATE COMPND 6 AMIDOHYDROLASE; COMPND 7 EC: 3.5.1.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: DAPE, VC_2152; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG7 KEYWDS DAPE, CSGID, METALLOENZYME, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.MAKOWSKA-GRZYSKA,M.GU,R.JEDRZEJCZAK,W.F.ANDERSON, AUTHOR 2 A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 23-APR-14 3T68 1 OBSLTE REVDAT 1 14-SEP-11 3T68 0 JRNL AUTH B.NOCEK,M.MAKOWSKA-GRZYSKA,M.GU,R.JEDRZEJCZAK,W.F.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF DAPE PROTEIN JRNL TITL 2 FROM V.CHOLEREA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 39185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : 1.25000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2139 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1438 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2918 ; 1.938 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3536 ; 1.055 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 6.369 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;32.914 ;24.494 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;11.473 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.534 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2427 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 408 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 1.383 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 563 ; 0.491 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2218 ; 2.248 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 771 ; 3.215 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 685 ; 5.086 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9905 -0.5965 28.7931 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.1125 REMARK 3 T33: 0.0088 T12: -0.0119 REMARK 3 T13: 0.0090 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.8883 L22: 1.1208 REMARK 3 L33: 0.6154 L12: -0.6661 REMARK 3 L13: 0.7274 L23: -0.3042 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: -0.2996 S13: -0.0023 REMARK 3 S21: -0.0498 S22: 0.0200 S23: -0.0099 REMARK 3 S31: 0.0678 S32: -0.1889 S33: -0.0705 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6307 0.7621 23.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.0416 T22: 0.1426 REMARK 3 T33: 0.0192 T12: -0.0195 REMARK 3 T13: 0.0194 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0482 L22: 2.6855 REMARK 3 L33: 0.4234 L12: -0.0408 REMARK 3 L13: 0.6774 L23: -0.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0721 S12: -0.1922 S13: -0.0174 REMARK 3 S21: 0.1142 S22: -0.0424 S23: 0.0052 REMARK 3 S31: 0.0615 S32: -0.2306 S33: -0.0297 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1852 -4.1873 15.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.1055 REMARK 3 T33: 0.0444 T12: -0.0453 REMARK 3 T13: 0.0144 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.0302 L22: 6.5076 REMARK 3 L33: 2.8041 L12: -0.3505 REMARK 3 L13: -0.3804 L23: 2.5068 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.0176 S13: 0.0164 REMARK 3 S21: 0.1088 S22: -0.0719 S23: -0.0797 REMARK 3 S31: 0.2126 S32: -0.4319 S33: 0.0508 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7447 1.2026 12.3736 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.0958 REMARK 3 T33: 0.0555 T12: -0.0025 REMARK 3 T13: -0.0037 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: -0.0430 L22: 0.1674 REMARK 3 L33: 0.8424 L12: 0.0723 REMARK 3 L13: 0.3245 L23: 0.2777 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: 0.0172 S13: 0.0371 REMARK 3 S21: 0.0484 S22: -0.1174 S23: -0.0178 REMARK 3 S31: 0.0821 S32: -0.1147 S33: 0.0810 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3464 -9.5407 34.1534 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.0869 REMARK 3 T33: 0.0131 T12: 0.0478 REMARK 3 T13: -0.0288 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.7581 L22: -0.1511 REMARK 3 L33: 3.4157 L12: -1.9217 REMARK 3 L13: 1.5256 L23: -1.0839 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: -0.1965 S13: 0.1690 REMARK 3 S21: -0.0510 S22: -0.0530 S23: 0.1086 REMARK 3 S31: 0.6004 S32: 0.1102 S33: -0.1612 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6060 4.8716 24.5079 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0828 REMARK 3 T33: 0.0454 T12: -0.0094 REMARK 3 T13: -0.0031 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: -0.0063 L22: 0.0527 REMARK 3 L33: 1.1595 L12: -0.1374 REMARK 3 L13: 0.1065 L23: -0.2625 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.0463 S13: -0.0291 REMARK 3 S21: -0.0030 S22: -0.0387 S23: 0.0638 REMARK 3 S31: -0.0220 S32: 0.0233 S33: -0.0018 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6353 18.9844 11.6695 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0303 REMARK 3 T33: 0.0664 T12: 0.1171 REMARK 3 T13: -0.0230 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 3.6574 L22: 5.9489 REMARK 3 L33: 17.0132 L12: 1.0849 REMARK 3 L13: 1.7963 L23: 5.0457 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: 0.1772 S13: 0.3672 REMARK 3 S21: -0.2431 S22: -0.1653 S23: -0.0774 REMARK 3 S31: -0.7528 S32: -0.6291 S33: 0.0843 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9885 -5.3080 13.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0654 REMARK 3 T33: 0.0604 T12: -0.0227 REMARK 3 T13: -0.0192 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.6040 L22: 3.1595 REMARK 3 L33: 1.7331 L12: -0.8916 REMARK 3 L13: 1.3275 L23: -1.5229 REMARK 3 S TENSOR REMARK 3 S11: 0.2087 S12: -0.0220 S13: 0.0381 REMARK 3 S21: -0.0957 S22: -0.1503 S23: -0.1239 REMARK 3 S31: 0.2761 S32: -0.2083 S33: -0.0584 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6295 -3.7358 4.0161 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.0815 REMARK 3 T33: 0.0446 T12: -0.0124 REMARK 3 T13: -0.0083 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.8134 L22: 0.7419 REMARK 3 L33: 0.2129 L12: 0.3922 REMARK 3 L13: 0.2868 L23: 0.1997 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.0301 S13: 0.0394 REMARK 3 S21: 0.0337 S22: -0.0966 S23: 0.0080 REMARK 3 S31: 0.0168 S32: -0.1012 S33: 0.0462 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6201 1.8114 6.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0703 REMARK 3 T33: 0.0597 T12: 0.0019 REMARK 3 T13: -0.0100 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.5583 L22: 0.1420 REMARK 3 L33: 2.3118 L12: 0.4740 REMARK 3 L13: 0.5330 L23: 0.0758 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.0011 S13: -0.0887 REMARK 3 S21: -0.0730 S22: 0.0531 S23: 0.0031 REMARK 3 S31: 0.0580 S32: 0.1915 S33: 0.0173 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2978 13.2744 6.2552 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0329 REMARK 3 T33: 0.0455 T12: -0.0131 REMARK 3 T13: -0.0053 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4293 L22: 0.9848 REMARK 3 L33: 2.7935 L12: 1.1895 REMARK 3 L13: 0.6947 L23: 0.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.0181 S13: -0.0443 REMARK 3 S21: 0.0215 S22: -0.0080 S23: 0.0133 REMARK 3 S31: -0.1891 S32: 0.0185 S33: -0.0380 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7160 0.5754 5.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0499 REMARK 3 T33: 0.0932 T12: 0.0183 REMARK 3 T13: 0.0396 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.0938 L22: 0.7511 REMARK 3 L33: 2.0644 L12: 1.9058 REMARK 3 L13: -0.0218 L23: -0.7407 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: 0.0126 S13: -0.1888 REMARK 3 S21: -0.1144 S22: -0.0045 S23: -0.1247 REMARK 3 S31: 0.0544 S32: 0.1355 S33: 0.0668 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3905 -3.3784 2.3409 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.0501 REMARK 3 T33: 0.0493 T12: -0.0198 REMARK 3 T13: -0.0184 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.0901 L22: 2.4939 REMARK 3 L33: 0.4767 L12: 0.5598 REMARK 3 L13: -0.2789 L23: 1.1457 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: -0.0217 S13: -0.0551 REMARK 3 S21: -0.0411 S22: 0.0183 S23: 0.0193 REMARK 3 S31: 0.0138 S32: 0.0125 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7607 -3.2738 21.5025 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.1037 REMARK 3 T33: 0.0274 T12: 0.0396 REMARK 3 T13: -0.0042 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.4782 L22: 0.2112 REMARK 3 L33: 2.6512 L12: -0.3436 REMARK 3 L13: 0.6510 L23: -0.7928 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: 0.0167 S13: 0.0109 REMARK 3 S21: -0.0648 S22: -0.0288 S23: 0.0480 REMARK 3 S31: 0.1725 S32: 0.3007 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1427 12.2859 17.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.0483 REMARK 3 T33: 0.0567 T12: -0.0084 REMARK 3 T13: 0.0028 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.1685 L22: 0.0852 REMARK 3 L33: 1.8430 L12: -0.3609 REMARK 3 L13: 1.0016 L23: -0.3458 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: -0.0266 S13: 0.0519 REMARK 3 S21: 0.0234 S22: -0.0307 S23: 0.0478 REMARK 3 S31: -0.1592 S32: 0.0989 S33: 0.0209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3T68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB067088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL3000 REMARK 200 DATA SCALING SOFTWARE : HKL3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3IC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) 1,4-BUTANEDIOL, 0.1 M REMARK 280 ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 155.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.52333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.52333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.04667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 727 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 PHE A 52 C O REMARK 470 PHE A 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 205 CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 230 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 155.47 -43.18 REMARK 500 GLU A 47 -133.84 55.35 REMARK 500 MET A 102 35.71 -147.79 REMARK 500 ASP A 122 35.80 -99.02 REMARK 500 ASN A 141 -39.47 -134.22 REMARK 500 PRO A 165 99.03 -62.36 REMARK 500 THR A 168 -60.65 -96.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISZ RELATED DB: PDB REMARK 900 RELATED ID: 3IC1 RELATED DB: PDB REMARK 900 RELATED ID: IDP90246 RELATED DB: TARGETDB DBREF 3T68 A 2 181 UNP Q9KQ52 DAPE_VIBCH 2 181 DBREF 3T68 A 184 266 UNP Q9KQ52 DAPE_VIBCH 295 377 SEQADV 3T68 SER A -1 UNP Q9KQ52 EXPRESSION TAG SEQADV 3T68 ASN A 0 UNP Q9KQ52 EXPRESSION TAG SEQADV 3T68 ALA A 1 UNP Q9KQ52 EXPRESSION TAG SEQADV 3T68 GLY A 182 UNP Q9KQ52 LINKER SEQADV 3T68 GLY A 183 UNP Q9KQ52 LINKER SEQRES 1 A 268 SER ASN ALA THR ASP SER PRO VAL LEU ALA LEU ALA LYS SEQRES 2 A 268 GLU LEU ILE SER ARG GLN SER VAL THR PRO ALA ASP ALA SEQRES 3 A 268 GLY CYS GLN ASP LEU MET ILE GLU ARG LEU LYS ALA LEU SEQRES 4 A 268 GLY PHE GLU ILE GLU SER MET VAL PHE GLU ASP THR THR SEQRES 5 A 268 ASN PHE TRP ALA ARG ARG GLY THR GLN SER PRO LEU PHE SEQRES 6 A 268 VAL PHE ALA GLY HIS THR ASP VAL VAL PRO ALA GLY PRO SEQRES 7 A 268 LEU SER GLN TRP HIS THR PRO PRO PHE GLU PRO THR VAL SEQRES 8 A 268 ILE ASP GLY PHE LEU HIS GLY ARG GLY ALA ALA ASP MET SEQRES 9 A 268 LYS GLY SER LEU ALA CYS MET ILE VAL ALA VAL GLU ARG SEQRES 10 A 268 PHE ILE ALA GLU HIS PRO ASP HIS GLN GLY SER ILE GLY SEQRES 11 A 268 PHE LEU ILE THR SER ASP GLU GLU GLY PRO PHE ILE ASN SEQRES 12 A 268 GLY THR VAL ARG VAL VAL GLU THR LEU MET ALA ARG ASN SEQRES 13 A 268 GLU LEU ILE ASP MET CYS ILE VAL GLY GLU PRO SER SER SEQRES 14 A 268 THR LEU ALA VAL GLY ASP VAL VAL LYS ASN GLY ARG ARG SEQRES 15 A 268 GLY GLY GLY PHE LEU THR ASP THR GLY GLU LEU LEU ALA SEQRES 16 A 268 ALA VAL VAL ALA ALA VAL GLU GLU VAL ASN HIS GLN ALA SEQRES 17 A 268 PRO ALA LEU LEU THR THR GLY GLY THR SER ASP GLY ARG SEQRES 18 A 268 PHE ILE ALA GLN MET GLY ALA GLN VAL VAL GLU LEU GLY SEQRES 19 A 268 PRO VAL ASN ALA THR ILE HIS LYS VAL ASN GLU CYS VAL SEQRES 20 A 268 ARG ILE ALA ASP LEU GLU LYS LEU THR ASP MET TYR GLN SEQRES 21 A 268 LYS THR LEU ASN HIS LEU LEU GLY HET GOL A 401 6 HET BU1 A 501 6 HET BU1 A 502 6 HET BU1 A 503 6 HET ACT A 602 4 HET EDO A 701 4 HET EDO A 702 4 HETNAM GOL GLYCEROL HETNAM BU1 1,4-BUTANEDIOL HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 BU1 3(C4 H10 O2) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *231(H2 O) HELIX 1 1 SER A 4 SER A 15 1 12 HELIX 2 2 GLY A 25 LEU A 37 1 13 HELIX 3 3 PRO A 76 TRP A 80 5 5 HELIX 4 4 MET A 102 HIS A 120 1 19 HELIX 5 5 ASN A 141 ARG A 153 1 13 HELIX 6 6 ARG A 179 PHE A 184 5 6 HELIX 7 7 GLY A 189 HIS A 204 1 16 HELIX 8 8 THR A 215 GLY A 225 1 11 HELIX 9 9 ILE A 247 GLY A 266 1 20 SHEET 1 A 8 GLU A 40 PHE A 46 0 SHEET 2 A 8 THR A 49 ARG A 56 -1 O TRP A 53 N GLU A 42 SHEET 3 A 8 SER A 126 THR A 132 -1 O ILE A 127 N ARG A 56 SHEET 4 A 8 LEU A 62 HIS A 68 1 N PHE A 63 O SER A 126 SHEET 5 A 8 MET A 159 VAL A 162 1 O ILE A 161 N ALA A 66 SHEET 6 A 8 GLN A 227 GLU A 230 1 O VAL A 229 N VAL A 162 SHEET 7 A 8 VAL A 174 ASN A 177 -1 N LYS A 176 O GLU A 230 SHEET 8 A 8 ALA A 208 LEU A 210 1 O LEU A 210 N ASN A 177 SHEET 1 B 3 THR A 88 ILE A 90 0 SHEET 2 B 3 PHE A 93 HIS A 95 -1 O HIS A 95 N THR A 88 SHEET 3 B 3 CYS A 244 ARG A 246 -1 O VAL A 245 N LEU A 94 CISPEP 1 THR A 20 PRO A 21 0 -2.33 CISPEP 2 SER A 60 PRO A 61 0 -2.12 CISPEP 3 ASP A 101 MET A 102 0 0.47 SITE 1 AC1 6 ARG A 145 GLU A 148 THR A 149 ARG A 179 SITE 2 AC1 6 HOH A 668 HOH A 798 SITE 1 AC2 9 VAL A 147 MET A 151 GLU A 155 LEU A 156 SITE 2 AC2 9 ILE A 157 MET A 224 GLY A 225 ALA A 226 SITE 3 AC2 9 HOH A 823 SITE 1 AC3 7 LEU A 77 TRP A 80 HIS A 81 THR A 82 SITE 2 AC3 7 VAL A 89 ASP A 91 GLY A 92 SITE 1 AC4 6 GLU A 40 ARG A 55 GLY A 57 THR A 58 SITE 2 AC4 6 HOH A 769 HOH A 817 SITE 1 AC5 4 GLY A 178 GLY A 214 GLY A 218 GLU A 230 SITE 1 AC6 3 PRO A 121 ASP A 122 HIS A 123 SITE 1 AC7 7 GLY A 67 HIS A 68 VAL A 162 GLU A 164 SITE 2 AC7 7 THR A 215 ASP A 217 HOH A 735 CRYST1 49.648 49.648 232.570 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020142 0.011629 0.000000 0.00000 SCALE2 0.000000 0.023258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004300 0.00000